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NEWS
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CHANGES IN VERSION 1.9.4
-------------------------
o Update the parameters for new version of ggplot2
CHANGES IN VERSION 1.3.2
-------------------------
o Update description file
CHANGES IN VERSION 1.3.1
-------------------------
o Update the function labelRatio
o Update the vignette
CHANGES IN VERSION 1.1.10
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o fixed typos in vignette
CHANGES IN VERSION 1.1.9
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o add function "proteinGroup"
CHANGES IN VERSION 1.1.8
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o update function "chargeStat"
o change file name
CHANGES IN VERSION 1.1.7
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o add new function for calculation of labeling efficiency
CHANGES IN VERSION 1.1.6
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o update vignette
CHANGES IN VERSION 1.1.5
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o add function "chargeStat"
CHANGES IN VERSION 1.1.4
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o fix several typos in vignette
CHANGES IN VERSION 1.1.3
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o support MS/MS searching without modification
CHANGES IN VERSION 1.1.2
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o change the figure of missed cleavages
o fix several typos in vignette
CHANGES IN VERSION 1.1.1
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o fix a minor bug
CHANGES IN VERSION 1.1.0
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o support mz[X]ML format file
o add identification-independent metrics
CHANGES IN VERSION 0.99.8
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o change the head of input design file: mgf -> file
CHANGES IN VERSION 0.99.7
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o Update unit test
CHANGES IN VERSION 0.99.6
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o fix: Vignette sources in 'inst/doc' missing from the 'vignettes' directory
CHANGES IN VERSION 0.99.5
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o fix a bug for qcHist
o function "plotFractionIDResult" update
CHANGES IN VERSION 0.99.4
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o add unit test
CHANGES IN VERSION 0.99.3
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o Most of the figures re-ploted using ggplot2
CHANGES IN VERSION 0.99.2
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o package version numbering
o format NEWS file
o remove README.md file
o removed most of the unused commented code
CHANGES IN VERSION 0.99.1
------------------------
o Format the code
CHANGES IN VERSION 0.99.0
------------------------
o updated DESCRIPTION: version, biocViews, VignetteBuilder
o initial draft of vignette
o msQCres S3 class and print method
o msQCres saved in outdir
o reportHTML can take msQCres of MsmqC dir
o new loadmsQCres function
o reduced example data
o using PXD000864 in vignette
o updating NAMESPACE