diff --git a/docs/404.html b/docs/404.html index 21a558a..8a20e91 100644 --- a/docs/404.html +++ b/docs/404.html @@ -54,7 +54,14 @@ - + diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 0e24588..efbe8ff 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -30,7 +30,13 @@ - + diff --git a/docs/articles/CytoSimplex.html b/docs/articles/CytoSimplex.html index c8858c8..9764f83 100644 --- a/docs/articles/CytoSimplex.html +++ b/docs/articles/CytoSimplex.html @@ -56,7 +56,14 @@ - + @@ -284,12 +291,12 @@

Create quaternary simplex plot
 plotQuaternary(rnaRaw, clusterVar = rnaCluster, vertices = vt.quat, 
                features = gene.quat, veloGraph = rnaVelo, interactive = TRUE)
- -

↑↑↑Try drag it!

+ +

↑↑↑Try drag it!

We have also implemented of GIF image generator that rotates the tetrahedron rounding the z-axis. Note that package magick is required for this feature. -(See +(See here for how to install magick in detail)

 writeQuaternaryGIF(rnaRaw, clusterVar = rnaCluster, vertices = vt.quat, 
diff --git a/docs/articles/index.html b/docs/articles/index.html
index b32803d..12754c0 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -30,7 +30,13 @@
       
 
-
    + diff --git a/docs/authors.html b/docs/authors.html index f6fbe1b..a904c03 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -30,7 +30,13 @@ - + diff --git a/docs/index.html b/docs/index.html index 5c324d7..fe84ade 100644 --- a/docs/index.html +++ b/docs/index.html @@ -60,7 +60,14 @@ - + @@ -72,7 +79,7 @@

    CytoSimplex

    -

    R_CMD_checkcodecovSeuratsce

    +

    R_CMD_checkcodecovSeuratsce

    CytoSimplex is an R package that creates simplex plot showing similarity between single-cells and terminals represented by clusters of cells. RNA velocity can be added as another layer of information.

    For Python users, we have a Python package CytoSimplex that provides the same functionalities.

    @@ -89,7 +96,7 @@

    Installation

    Tutorial

    -

    We have created a documentation website for posting example tutorials walking through the process from loading the provided example data and creating different types of visualization.

    +

    We have created a documentation website for posting example tutorials walking through the process from loading the provided example data and creating different types of visualization.