From 536252f824a010277947517c7a53eb4fb439f3a0 Mon Sep 17 00:00:00 2001 From: Wolfgang Maier Date: Fri, 9 Aug 2024 11:30:45 +0200 Subject: [PATCH 1/2] Update global_host_filters.py.j2 --- .../galaxy/config/global_host_filters.py.j2 | 24 ++++++++++++++++++- 1 file changed, 23 insertions(+), 1 deletion(-) diff --git a/templates/galaxy/config/global_host_filters.py.j2 b/templates/galaxy/config/global_host_filters.py.j2 index dccd43bbc..26349d85e 100644 --- a/templates/galaxy/config/global_host_filters.py.j2 +++ b/templates/galaxy/config/global_host_filters.py.j2 @@ -74,7 +74,29 @@ DOMAIN_SECTIONS = { 'assembly': GENERAL_NGS_SECTIONS + ["hicexplorer", "graph_display_data", "peak_calling", "assembly", "annotation", 'genome_diversity', 'multiple_alignments'], 'hicexplorer': GENERAL_NGS_SECTIONS + ["hicexplorer", "graph_display_data", "peak_calling"], - 'virology': GENERAL_NGS_SECTIONS + ["assembly", "annotation", "phylogenetics"], + 'virology': GENERAL_NGS_SECTIONS + [ + "virology", + "phylogenetics", + "multiple_alignments", + "evolution", + "assembly", + "variant_calling", + "quality_control", + "graph_display_data", + "vcf_bcf", + "emboss", + "extract_features", + "ncbi_blast", + "annotation", + "nanopore", + "rna_seq", + "rna_analysis", + "metagenomic_analysis", + "peak_calling", + "sanger_sequencing", + "statistics", + "builtin_converters", + ], 'nanopore': GENERAL_NGS_SECTIONS + ["nanopore", "ncbi_blast", "fasta_fastq", "assembly", "graph_display_data", "metagenomic_analysis"], 'ecology': ["join__subtract_and_group", "convert_formats", "data_and_metadata_management", "operate_on_genomic_intervals", "statistics", "graph_display_data", "machine_learning", "ncbi_blast", "fasta_fastq", "fastq_quality_control", "assembly", "dna_metabarcoding", "metagenomic_analysis", From 066b3288be8cb7ca0d9dac71fe7108f316e2eb58 Mon Sep 17 00:00:00 2001 From: Wolfgang Maier Date: Fri, 9 Aug 2024 11:48:55 +0200 Subject: [PATCH 2/2] include mimodd used in pox tutorial --- templates/galaxy/config/global_host_filters.py.j2 | 1 + 1 file changed, 1 insertion(+) diff --git a/templates/galaxy/config/global_host_filters.py.j2 b/templates/galaxy/config/global_host_filters.py.j2 index 26349d85e..7160fde27 100644 --- a/templates/galaxy/config/global_host_filters.py.j2 +++ b/templates/galaxy/config/global_host_filters.py.j2 @@ -92,6 +92,7 @@ DOMAIN_SECTIONS = { "rna_seq", "rna_analysis", "metagenomic_analysis", + "mimodd", "peak_calling", "sanger_sequencing", "statistics",