From 4e667e12f284127e502b04e26f329e8314e1cf14 Mon Sep 17 00:00:00 2001 From: "galaxy-social-bot[bot]" <171031730+galaxy-social-bot[bot]@users.noreply.github.com> Date: Tue, 20 Aug 2024 00:30:13 +0000 Subject: [PATCH 1/6] Add Sysadmin Curriculum Planning --- .../galaxy_europe/2024-08-16-sanbi.md | 49 +++++++++++++++++++ 1 file changed, 49 insertions(+) create mode 100644 posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md diff --git a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md new file mode 100644 index 0000000..da56169 --- /dev/null +++ b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md @@ -0,0 +1,49 @@ +--- +media: +- mastodon-eu-freiburg +- matrix-eu-announce +- bluesky-galaxyproject +- linkedin-galaxyproject +mentions: + mastodon-eu-freiburg: + - galaxyproject@mstdn.science + bluesky-galaxyproject: + - galaxyproject.bsky.social + matrix-eu-announce: + - bgruening:matrix.org +hashtags: + mastodon-eu-freiburg: + - UseGalaxy + - GalaxyProject + - UniFreiburg + - usegalaxy + - EOSC + - EuroScienceGateway + bluesky-galaxyproject: + - UseGalaxy + - GalaxyProject + - UniFreiburg + - usegalaxy + - EOSC + - EuroScienceGateway + linkedin-galaxyproject: + - UseGalaxy + - GalaxyProject + - UniFreiburg + - usegalaxy + - EOSC + - EuroScienceGateway +--- +📝 New blog post Released! + +![Workshop's participants standing in front of a monitor showing the two online participants](https://galaxyproject.org/news/2024-08-16-sanbi/sanbi.jpg) + + +Public health laboratories often face the challenge of processing vast amounts of data, such as outputs from sequencing machines. This can quickly become overwhelming for scientists and bioinformaticians alike. To improve workflow efficiency and strengthen scientific infrastructure, these labs require skilled professionals proficient in Linux system administration and HPC compute environments. + +In response to this need, Professor Alan Christoffels and Peter van Heusden from the South African National Biodiversity Institute convened a group of experts from Africa, Europe, and beyond to develop a training curriculum aimed at bridging the sysadmin skills gap. This initiative seeks to bolster public health bioinformatics and genomic epidemiology across Africa. +The diverse group of participants, hailing from public health labs, research institutions, and initiatives such as the Galaxy Project, de.KCD, UK MRC CLIMB\-BIG DATA, RSSE.Africa, Public Health Alliance for Genomic Epidemiology (PHA4GE), and H3ABioNet, gathered for a week\-long workshop at the University of the Western Cape in Cape Town, South Africa, to share knowledge and ideas. + +Together, the group identified potential roles in the public health labs and drafted curriculum modules inspired by the HPC Certification Forum, covering key areas such as hardware, monitoring, documentation, and storage. By actively contributing to discussions, Mira Kuntz (appearing on\-screen, left) helped pushing towards de.KCD's project goals of developing a structured training program and self\-learning units consisting of learning paths and modules and to train researchers, software developers and system administrators to perform their data processing and analysis. + +https://galaxyproject.org/news/2024-08-16-sanbi/ \ No newline at end of file From 93be838d598313142f2c50a2bb415bdcf67399d1 Mon Sep 17 00:00:00 2001 From: Arash Kadkhodaei Date: Tue, 10 Sep 2024 12:41:26 +0200 Subject: [PATCH 2/6] Create File for bluesky --- .../galaxy_europe/2024-08-16-sanbi-bluesky.md | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 posts/feed_bot/galaxy_europe/2024-08-16-sanbi-bluesky.md diff --git a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-bluesky.md b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-bluesky.md new file mode 100644 index 0000000..2832f08 --- /dev/null +++ b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-bluesky.md @@ -0,0 +1,28 @@ +--- +media: +- bluesky-galaxyproject +mentions: + bluesky-galaxyproject: + - galaxyproject.bsky.social +hashtags: + bluesky-galaxyproject: + - UseGalaxy + - GalaxyProject + - UniFreiburg + - usegalaxy + - EOSC + - EuroScienceGateway +--- +📝 New blog post Released! + +![Workshop's participants standing in front of a monitor showing the two online participants](https://galaxyproject.org/news/2024-08-16-sanbi/sanbi.jpg) + + +Public health laboratories often face the challenge of processing vast amounts of data, such as outputs from sequencing machines. This can quickly become overwhelming for scientists and bioinformaticians alike. To improve workflow efficiency and strengthen scientific infrastructure, these labs require skilled professionals proficient in Linux system administration and HPC compute environments. + +In response to this need, Professor Alan Christoffels and Peter van Heusden from the South African National Biodiversity Institute convened a group of experts from Africa, Europe, and beyond to develop a training curriculum aimed at bridging the sysadmin skills gap. This initiative seeks to bolster public health bioinformatics and genomic epidemiology across Africa. +The diverse group of participants, hailing from public health labs, research institutions, and initiatives such as the Galaxy Project, de.KCD, UK MRC CLIMB\-BIG DATA, RSSE.Africa, Public Health Alliance for Genomic Epidemiology (PHA4GE), and H3ABioNet, gathered for a week\-long workshop at the University of the Western Cape in Cape Town, South Africa, to share knowledge and ideas. + +Together, the group identified potential roles in the public health labs and drafted curriculum modules inspired by the HPC Certification Forum, covering key areas such as hardware, monitoring, documentation, and storage. By actively contributing to discussions, Mira Kuntz (appearing on\-screen, left) helped pushing towards de.KCD's project goals of developing a structured training program and self\-learning units consisting of learning paths and modules and to train researchers, software developers and system administrators to perform their data processing and analysis. + +https://galaxyproject.org/news/2024-08-16-sanbi/ From f0c313b632d89aef58bfaff64993cab0204c1671 Mon Sep 17 00:00:00 2001 From: Arash Kadkhodaei Date: Tue, 10 Sep 2024 12:41:45 +0200 Subject: [PATCH 3/6] Update 2024-08-16-sanbi.md --- posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md | 12 +----------- 1 file changed, 1 insertion(+), 11 deletions(-) diff --git a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md index da56169..49bfb2e 100644 --- a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md +++ b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md @@ -2,13 +2,10 @@ media: - mastodon-eu-freiburg - matrix-eu-announce -- bluesky-galaxyproject - linkedin-galaxyproject mentions: mastodon-eu-freiburg: - galaxyproject@mstdn.science - bluesky-galaxyproject: - - galaxyproject.bsky.social matrix-eu-announce: - bgruening:matrix.org hashtags: @@ -19,13 +16,6 @@ hashtags: - usegalaxy - EOSC - EuroScienceGateway - bluesky-galaxyproject: - - UseGalaxy - - GalaxyProject - - UniFreiburg - - usegalaxy - - EOSC - - EuroScienceGateway linkedin-galaxyproject: - UseGalaxy - GalaxyProject @@ -46,4 +36,4 @@ The diverse group of participants, hailing from public health labs, research ins Together, the group identified potential roles in the public health labs and drafted curriculum modules inspired by the HPC Certification Forum, covering key areas such as hardware, monitoring, documentation, and storage. By actively contributing to discussions, Mira Kuntz (appearing on\-screen, left) helped pushing towards de.KCD's project goals of developing a structured training program and self\-learning units consisting of learning paths and modules and to train researchers, software developers and system administrators to perform their data processing and analysis. -https://galaxyproject.org/news/2024-08-16-sanbi/ \ No newline at end of file +https://galaxyproject.org/news/2024-08-16-sanbi/ From 9a0202e86868521d57c6ca9738f3bf366552e0b4 Mon Sep 17 00:00:00 2001 From: Arash Kadkhodaei Date: Tue, 10 Sep 2024 12:49:59 +0200 Subject: [PATCH 4/6] Rename 2024-08-16-sanbi-bluesky.md to 2024-08-16-sanbi-group2.md --- .../{2024-08-16-sanbi-bluesky.md => 2024-08-16-sanbi-group2.md} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename posts/feed_bot/galaxy_europe/{2024-08-16-sanbi-bluesky.md => 2024-08-16-sanbi-group2.md} (100%) diff --git a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-bluesky.md b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group2.md similarity index 100% rename from posts/feed_bot/galaxy_europe/2024-08-16-sanbi-bluesky.md rename to posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group2.md From 978e0023220339734d4f2ff0e6b632764606d4da Mon Sep 17 00:00:00 2001 From: Arash Kadkhodaei Date: Tue, 10 Sep 2024 12:50:12 +0200 Subject: [PATCH 5/6] Rename 2024-08-16-sanbi.md to 2024-08-16-sanbi-group1.md --- .../{2024-08-16-sanbi.md => 2024-08-16-sanbi-group1.md} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename posts/feed_bot/galaxy_europe/{2024-08-16-sanbi.md => 2024-08-16-sanbi-group1.md} (100%) diff --git a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group1.md similarity index 100% rename from posts/feed_bot/galaxy_europe/2024-08-16-sanbi.md rename to posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group1.md From 3f2074a7e989eb213f9ad364b2a4f7301a5b9617 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= Date: Tue, 10 Sep 2024 12:54:56 +0200 Subject: [PATCH 6/6] Update 2024-08-16-sanbi-group2.md --- .../galaxy_europe/2024-08-16-sanbi-group2.md | 15 ++------------- 1 file changed, 2 insertions(+), 13 deletions(-) diff --git a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group2.md b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group2.md index 2832f08..71fcfe5 100644 --- a/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group2.md +++ b/posts/feed_bot/galaxy_europe/2024-08-16-sanbi-group2.md @@ -9,20 +9,9 @@ hashtags: - UseGalaxy - GalaxyProject - UniFreiburg - - usegalaxy - - EOSC - EuroScienceGateway --- -📝 New blog post Released! -![Workshop's participants standing in front of a monitor showing the two online participants](https://galaxyproject.org/news/2024-08-16-sanbi/sanbi.jpg) - - -Public health laboratories often face the challenge of processing vast amounts of data, such as outputs from sequencing machines. This can quickly become overwhelming for scientists and bioinformaticians alike. To improve workflow efficiency and strengthen scientific infrastructure, these labs require skilled professionals proficient in Linux system administration and HPC compute environments. +Read more about our Workshop on filling the sysadmin skills gap to support public health bioinformatics & genomic epidemiology in Africa https://galaxyproject.org/news/2024-08-16-sanbi/ -In response to this need, Professor Alan Christoffels and Peter van Heusden from the South African National Biodiversity Institute convened a group of experts from Africa, Europe, and beyond to develop a training curriculum aimed at bridging the sysadmin skills gap. This initiative seeks to bolster public health bioinformatics and genomic epidemiology across Africa. -The diverse group of participants, hailing from public health labs, research institutions, and initiatives such as the Galaxy Project, de.KCD, UK MRC CLIMB\-BIG DATA, RSSE.Africa, Public Health Alliance for Genomic Epidemiology (PHA4GE), and H3ABioNet, gathered for a week\-long workshop at the University of the Western Cape in Cape Town, South Africa, to share knowledge and ideas. - -Together, the group identified potential roles in the public health labs and drafted curriculum modules inspired by the HPC Certification Forum, covering key areas such as hardware, monitoring, documentation, and storage. By actively contributing to discussions, Mira Kuntz (appearing on\-screen, left) helped pushing towards de.KCD's project goals of developing a structured training program and self\-learning units consisting of learning paths and modules and to train researchers, software developers and system administrators to perform their data processing and analysis. - -https://galaxyproject.org/news/2024-08-16-sanbi/ +![Workshop's participants standing in front of a monitor showing the two online participants](https://galaxyproject.org/news/2024-08-16-sanbi/sanbi.jpg)