tools_resources.html

---
layout: default
title: Tools & Resources
permalink: /resources/
---
<div class="row">
  <div class="col-sm-12">
    <p>
    <h3>Tools and Resources </h3>
    </p>
  </div>
</div>
<div class="row">
  <div class="col-sm-12">
    <p> <strong>IDseq </strong></p>
    <p>IDseq is user-friendly software platform, originally developed for metagenomics studies. Functionality has
      since
      been added for SC2 consensus assembly calling from paired-end Illumina data.
      <br><a href="https://www.discoveridseq.com/" target="_blank">https://www.discoveridseq.com/</a>
    </p>
  </div>
</div>

<div class="row">
  <div class="col-sm-12">
    <p> <strong>Basestack </strong></p>
    <p>Basestack is a platform for local deployment of standardized genomic surveillance analysis tools. It
      currently
      enables real-time analysis of Nanopore generated sequencing data for SARS-CoV-2.
      <br><a href="https://jhuapl-bio.github.io/Basestack/" target="_blank">https://jhuapl-bio.github.io/Basestack/</a>
    </p>
  </div>
</div>


<div class="row">
  <div class="col-sm-12">
    <p> <strong>No code Phylogenetic analysis </strong></p>
    <p>An open source, free, no-code genomic epidemiology analysis platform for public health
      <br><a href="https://czgenepi.org/" target="_blank">https://czgenepi.org/</a>
    </p>
  </div>
</div>