config.cfg

[PATHS]
MOUNTPATH = /volume
DATAPATH = %(MOUNTPATH)s/data
MIMICPATH = %(DATAPATH)s/mimic3/mimic-iii-clinical-database-1.4
DEMOPATH = %(DATAPATH)s/mimic3/mimic-iii-clinical-database-demo-1.4
WAVEFPATH = %(DATAPATH)s/waveform/physionet.org/files/mimic3wdb-matched/1.0
OUTPUTPATH = %(MOUNTPATH)s/model
EXPLOREPATH = %(MOUNTPATH)s/explore_output
MODELPATH = %(OUTPUTPATH)s/MyCNN5.pth

LOCALMOUNTPATH = //Users/michaelscott/bd4h/project/streaming-env/time-series-kafka-demo
LOCALDATAPATH = %(LOCALMOUNTPATH)s/data
LOCALMIMICPATH = %(LOCALDATAPATH)s/mimic3/mimic-iii-clinical-database-1.4
LOCALDEMOPATH = %(LOCALDATAPATH)s/mimic3/mimic-iii-clinical-database-demo-1.4
LOCALWAVEFPATH = %(LOCALDATAPATH)s/waveform/physionet.org/files/mimic3wdb-matched/1.0
LOCALOUTPUTPATH = %(LOCALMOUNTPATH)s/model
LOCALEXPLOREPATH = %(LOCALMOUNTPATH)s/explore_output
LOCALMODELPATH = %(LOCALOUTPUTPATH)s/MyCNN5.pth

[SETTINGS]
USE_CUDA = 0
NUM_WORKERS = 0
CHANNEL_NAMES = HR, RESP, PULSE, PVC Rate per Minute, SpO2, CVP, ST V, NBP Mean, NBP Dias, NBP Sys
PATIENTRECORDS = p000194-2112-05-23-14-34n, p044083-2112-05-04-19-50n
WINDOWSIZE = 120
RECORDOVERLAP = 0.4
BATCHSIZE = 16