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environment.yml
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name: crispresso-env
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.6.1=h7f98852_0
- attrs=22.1.0=pyh71513ae_1
- biopython=1.79=py310h5764c6d_2
- bowtie2=2.4.5=py310he297e0b_3
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.6.15=ha878542_0
- cairo=1.16.0=ha61ee94_1012
- coverage=6.4.4=py310h5764c6d_0
- curl=7.83.1=h2283fc2_0
- emboss=6.6.0=h86d058a_5
- expat=2.4.8=h27087fc_0
- flash=1.2.11=h27826a3_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.0=h8e229c2_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_0
- gettext=0.19.8.1=h73d1719_1008
- giflib=5.2.1=h36c2ea0_2
- graphite2=1.3.13=h58526e2_1001
- harfbuzz=5.1.0=hf9f4e7c_0
- htslib=1.9=h4da6232_3
- icu=70.1=h27087fc_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- jpeg=9e=h166bdaf_2
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h08a2579_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcups=2.3.3=h3e49a29_2
- libcurl=7.83.1=h2283fc2_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=12.1.0=h8d9b700_16
- libgd=2.3.3=h18fbbfe_3
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libglib=2.72.1=h2d90d5f_0
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=hff17c54_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_2
- libpng=1.6.37=h753d276_4
- libsqlite=3.39.2=h753d276_1
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.1.0=ha89aaad_16
- libtiff=4.4.0=h0e0dad5_3
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.4=h522a892_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libzlib=1.2.12=h166bdaf_2
- mysql-connector-c=6.1.6=0
- ncurses=6.3=h27087fc_1
- numpy=1.23.2=py310h53a5b5f_0
- openjdk=17.0.3=h1e1ecb3_1
- openssl=3.0.5=h166bdaf_1
- packaging=21.3=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=2_h7f98852_perl5
- pip=22.2.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pluggy=1.0.0=py310hff52083_3
- pthread-stubs=0.4=h36c2ea0_1001
- py=1.11.0=pyh6c4a22f_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pytest=7.1.2=py310hff52083_0
- python=3.10.5=ha86cf86_0_cpython
- python_abi=3.10=2_cp310
- readline=8.1.2=h0f457ee_0
- samtools=1.6=h3f2fef4_8
- setuptools=65.1.1=py310hff52083_0
- sqlite=3.39.2=h4ff8645_1
- tbb=2020.2=h4bd325d_4
- tk=8.6.12=h27826a3_0
- tomli=2.0.1=pyhd8ed1ab_0
- trimmomatic=0.39=hdfd78af_2
- tzdata=2022c=h191b570_0
- ucsc-fatotwobit=357=0
- wheel=0.37.1=pyhd8ed1ab_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.12=h166bdaf_2
- zstd=1.5.2=h6239696_4
- pip:
- cycler==0.11.0
- fonttools==4.36.0
- kiwisolver==1.4.4
- matplotlib==3.5.3
- kaleido
- pandas==1.4.3
- pillow==9.2.0
- python-dateutil==2.8.2
- plotly
- pytz==2022.2.1
- scipy==1.9.0
- seaborn==0.11.2
- six==1.16.0
- -e .