This tutorial take you from the bare bones concepts of bio-physically detailled cells to a simple network in Arbor. It is meant mainly for self-directed study and experimentation with the opportunity to ask questions. If you are tackling this on your own (i.e. not during a workshop), please contact us on Gitter.
You’ll need recent versions of Linux or MacOS, Python3, and possibly a C++ compiler. Start by cloning this repository and then open a shell:
python3 -m venv venv
source venv/bin/activate
pip3 install arbor numpy seaborn matplotlib networkx jupyter
jupyter labWhile your packages are being installed, you can take a look at the introduction
in intro.pdf. Then, open the arbor-tutorial.ipynb notebook; everything else
should follow from there.