diff --git a/README.md b/README.md index 008550e..5740530 100644 --- a/README.md +++ b/README.md @@ -2,18 +2,18 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-12-03 12:11:14 UTC +2024-12-04 12:11:38 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 788 | 19 | 73 | 189 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 789 | 19 | 73 | 189 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | | [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 103 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 103 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 352 | 8 | 23 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | -| [theislab/scib](https://github.com/theislab/scib) | 312 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033984) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033925) | acfde7 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 271 | 14 | 33 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12121943778) | e775ed | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 238 | 5 | 40 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789991) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789988) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135790002) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789997) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789994) | 2e8240 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 238 | 5 | 40 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 352 | 8 | 22 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | +| [theislab/scib](https://github.com/theislab/scib) | 313 | 14 | 43 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033984) | acfde7 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 274 | 14 | 33 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12121943778) | e775ed | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 238 | 5 | 42 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789991) | 2e8240 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 238 | 5 | 42 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 152 | 5 | 12 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12134366548) | 26f413 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | @@ -22,7 +22,7 @@ GitHub Dashboard | [theislab/moscot](https://github.com/theislab/moscot) | 117 | 3 | 44 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | | [theislab/ncem](https://github.com/theislab/ncem) | 103 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/spapros](https://github.com/theislab/spapros) | 29 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12131223460) | 1ec08e | +| [theislab/spapros](https://github.com/theislab/spapros) | 29 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12151299217) | 1ec08e | | [theislab/spapros](https://github.com/theislab/spapros) | 29 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | @@ -30,11 +30,11 @@ GitHub Dashboard | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12128496859) | 4bafbc | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 1 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 6 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12110460841) | 210765 | | [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12139215947) | 24b152 | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 19 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030309) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030299) | e06ea3 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12159308163) | 686b8b | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12102480774) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -51,7 +51,7 @@ GitHub Dashboard | [theislab/kBET](https://github.com/theislab/kBET) | 155 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 152 | 9 | 8 | 24 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 145 | 5 | 6 | 13 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 105 | 5 | 12 | 24 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 104 | 5 | 12 | 24 | | [theislab/cpa](https://github.com/theislab/cpa) | 88 | 5 | 21 | 17 | | [theislab/destiny](https://github.com/theislab/destiny) | 78 | 5 | 31 | 11 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 67 | 5 | 14 | 2 | @@ -59,7 +59,7 @@ GitHub Dashboard | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 57 | 6 | 6 | 8 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 55 | 6 | 4 | 13 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 55 | 6 | 3 | 12 | -| [theislab/scTab](https://github.com/theislab/scTab) | 50 | 4 | 1 | 9 | +| [theislab/scTab](https://github.com/theislab/scTab) | 51 | 4 | 1 | 9 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 50 | 9 | 0 | 27 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | @@ -67,10 +67,10 @@ GitHub Dashboard | [theislab/deepflow](https://github.com/theislab/deepflow) | 31 | 5 | 1 | 14 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 31 | 2 | 4 | 13 | | [theislab/DeepRT](https://github.com/theislab/DeepRT) | 30 | 2 | 11 | 10 | +| [theislab/DRVI](https://github.com/theislab/DRVI) | 28 | 1 | 1 | 2 | | [theislab/batchglm](https://github.com/theislab/batchglm) | 27 | 3 | 47 | 9 | | [theislab/graph_abstraction](https://github.com/theislab/graph_abstraction) | 26 | 8 | 0 | 10 | | [theislab/prophet](https://github.com/theislab/prophet) | 26 | 5 | 2 | 2 | -| [theislab/DRVI](https://github.com/theislab/DRVI) | 25 | 1 | 1 | 2 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 22 | 4 | 6 | 8 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | @@ -98,20 +98,21 @@ GitHub Dashboard | [theislab/IMPA](https://github.com/theislab/IMPA) | 9 | 2 | 1 | 0 | | [theislab/scatac_poisson_reproducibility](https://github.com/theislab/scatac_poisson_reproducibility) | 9 | 3 | 0 | 0 | | [theislab/trvaep](https://github.com/theislab/trvaep) | 9 | 3 | 0 | 6 | +| [theislab/2020_Mayr](https://github.com/theislab/2020_Mayr) | 8 | 6 | 0 | 8 | | [theislab/jump-cpg0016-segmentation](https://github.com/theislab/jump-cpg0016-segmentation) | 8 | 1 | 2 | 0 | | [theislab/ncem_benchmarks](https://github.com/theislab/ncem_benchmarks) | 8 | 4 | 4 | 2 | | [theislab/PathReg](https://github.com/theislab/PathReg) | 8 | 3 | 0 | 0 | | [theislab/sc-best-practices-ce](https://github.com/theislab/sc-best-practices-ce) | 8 | 8 | 2 | 3 | +| [theislab/scachepy](https://github.com/theislab/scachepy) | 8 | 5 | 3 | 1 | | [theislab/scCODA_reproducibility](https://github.com/theislab/scCODA_reproducibility) | 8 | 5 | 0 | 1 | | [theislab/squidpy_reproducibility](https://github.com/theislab/squidpy_reproducibility) | 8 | 2 | 0 | 7 | | [theislab/tissue_tensorflow](https://github.com/theislab/tissue_tensorflow) | 8 | 3 | 0 | 0 | | [theislab/2018_Angelidis](https://github.com/theislab/2018_Angelidis) | 7 | 4 | 0 | 6 | | [theislab/2019_Strunz](https://github.com/theislab/2019_Strunz) | 7 | 5 | 1 | 11 | -| [theislab/2020_Mayr](https://github.com/theislab/2020_Mayr) | 7 | 6 | 0 | 8 | | [theislab/cpa-reproducibility](https://github.com/theislab/cpa-reproducibility) | 7 | 2 | 1 | 1 | | [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 7 | 3 | 0 | 1 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 7 | 3 | | [theislab/mouse_cross-condition_pancreatic_islet_atlas](https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas) | 7 | 2 | 0 | 4 | -| [theislab/scachepy](https://github.com/theislab/scachepy) | 7 | 5 | 3 | 1 | | [theislab/CFGen](https://github.com/theislab/CFGen) | 6 | 1 | 1 | 4 | | [theislab/disent](https://github.com/theislab/disent) | 6 | 3 | 0 | 0 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | @@ -121,7 +122,6 @@ GitHub Dashboard | [theislab/theislab.github.io](https://github.com/theislab/theislab.github.io) | 6 | 2 | 9 | 0 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 7 | | [theislab/atlas-feature-selection-benchmark](https://github.com/theislab/atlas-feature-selection-benchmark) | 5 | 2 | 0 | 0 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 19 | 1 | | [theislab/flowVI](https://github.com/theislab/flowVI) | 5 | 3 | 0 | 0 | | [theislab/InterpretableAutoencoders](https://github.com/theislab/InterpretableAutoencoders) | 5 | 4 | 0 | 0 | | [theislab/kbranches](https://github.com/theislab/kbranches) | 5 | 7 | 0 | 0 | @@ -200,7 +200,6 @@ GitHub Dashboard | [theislab/hadge-reproducibility](https://github.com/theislab/hadge-reproducibility) | 0 | 2 | 0 | 0 | | [theislab/icml_cbw_2022_clcvae](https://github.com/theislab/icml_cbw_2022_clcvae) | 0 | 3 | 0 | 0 | | [theislab/integraph](https://github.com/theislab/integraph) | 0 | 2 | 4 | 0 | -| 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+ + + + + + + + + - - + + @@ -462,7 +458,7 @@

Repos without Github Actions

- + @@ -518,7 +514,7 @@

Repos without Github Actions

- + @@ -573,33 +569,33 @@

Repos without Github Actions

+ + + + + + + - + - + - - - - - - - @@ -790,33 +786,47 @@

Repos without Github Actions

+ + + + + + + - + - + - + + + + + + + + @@ -853,26 +863,26 @@

Repos without Github Actions

- - - - - - - - + + + + + + + + @@ -881,82 +891,68 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - - - - - - - @@ -1504,160 +1500,153 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 42f1749..552e77c 100644 --- a/repos.csv +++ b/repos.csv @@ -3,7 +3,7 @@ theislab,2015-grn-inference,theislab/2015-grn-inference,0,2,0,0,FALSE,https://gi theislab,2018_Angelidis,theislab/2018_Angelidis,7,4,0,6,FALSE,https://github.com/theislab/2018_Angelidis,7,NA,NA,NA theislab,2019_Strunz,theislab/2019_Strunz,7,5,1,11,FALSE,https://github.com/theislab/2019_Strunz,7,NA,NA,NA theislab,2020_Inhibition_LTbetaR-signalling,theislab/2020_Inhibition_LTbetaR-signalling,0,4,0,3,FALSE,https://github.com/theislab/2020_Inhibition_LTbetaR-signalling,0,NA,NA,NA -theislab,2020_Mayr,theislab/2020_Mayr,7,6,0,8,FALSE,https://github.com/theislab/2020_Mayr,7,NA,NA,NA +theislab,2020_Mayr,theislab/2020_Mayr,8,6,0,8,FALSE,https://github.com/theislab/2020_Mayr,8,NA,NA,NA theislab,2020_iPS_Lung_Differentiation,theislab/2020_iPS_Lung_Differentiation,2,5,0,2,FALSE,https://github.com/theislab/2020_iPS_Lung_Differentiation,2,NA,NA,NA theislab,2021_Aliluev_Tritschler_gut_HFD,theislab/2021_Aliluev_Tritschler_gut_HFD,2,4,0,1,FALSE,https://github.com/theislab/2021_Aliluev_Tritschler_gut_HFD,2,NA,NA,NA theislab,2021_PRMT7_regulates_Monocyte_Extravasation,theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,4,0,2,FALSE,https://github.com/theislab/2021_PRMT7_regulates_Monocyte_Extravasation,1,NA,NA,NA @@ -12,7 +12,7 @@ theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancrea theislab,AutoGeneS,theislab/AutoGeneS,57,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,57,NA,NA,NA theislab,CFGen,theislab/CFGen,6,1,1,4,FALSE,https://github.com/theislab/CFGen,6,NA,NA,NA theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA -theislab,DRVI,theislab/DRVI,25,1,1,2,FALSE,https://github.com/theislab/DRVI,25,NA,NA,NA +theislab,DRVI,theislab/DRVI,28,1,1,2,FALSE,https://github.com/theislab/DRVI,28,NA,NA,NA theislab,DRVI_reproducibility,theislab/DRVI_reproducibility,2,3,0,1,FALSE,https://github.com/theislab/DRVI_reproducibility,2,NA,NA,NA theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,14,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,14,NA,NA,NA theislab,DeepRT,theislab/DeepRT,30,2,11,10,FALSE,https://github.com/theislab/DeepRT,30,NA,NA,NA @@ -51,7 +51,7 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,6,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,352,8,23,46,FALSE,https://github.com/theislab/cellrank,352,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) +theislab,cellrank,theislab/cellrank,352,8,22,46,FALSE,https://github.com/theislab/cellrank,352,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) * chore: bump ruff pre-commit hook version @@ -130,7 +130,7 @@ Update references to published paper.",[![](https://github.com/theislab/cellrank theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,14,2,1,8,FALSE,https://github.com/theislab/cellrank_reproducibility,14,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,3,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,3,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,105,5,12,24,FALSE,https://github.com/theislab/chemCPA,105,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,104,5,12,24,FALSE,https://github.com/theislab/chemCPA,104,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA @@ -147,13 +147,13 @@ theislab,diffxpy,theislab/diffxpy,193,7,108,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,238,5,40,19,FALSE,https://github.com/theislab/ehrapy,238,2e8240f7e53ecfd479e4835d1aff9cd1f981a242,"[pre-commit.ci] pre-commit autoupdate (#833) +theislab,ehrapy,theislab/ehrapy,238,5,42,20,FALSE,https://github.com/theislab/ehrapy,238,2e8240f7e53ecfd479e4835d1aff9cd1f981a242,"[pre-commit.ci] pre-commit autoupdate (#833) updates: - [github.com/astral-sh/ruff-pre-commit: v0.8.0 → v0.8.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.0...v0.8.1) -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789991) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789988) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135790002) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789997) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789994) -theislab,ehrapy,theislab/ehrapy,238,5,40,19,FALSE,https://github.com/theislab/ehrapy,238,c4721fb128532782c9af134029a70a5e42293f18,"0.10.0 release +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12135789991) +theislab,ehrapy,theislab/ehrapy,238,5,42,20,FALSE,https://github.com/theislab/ehrapy,238,c4721fb128532782c9af134029a70a5e42293f18,"0.10.0 release Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA @@ -163,7 +163,42 @@ change diabetes dataset doc",[![](https://github.com/theislab/ehrapy-datasets/wo theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,2,1,1,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,2,NA,NA,NA theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,0,1,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA -theislab,ehrdata,theislab/ehrdata,5,2,19,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA +theislab,ehrdata,theislab/ehrdata,5,2,19,1,FALSE,https://github.com/theislab/ehrdata,5,e06ea3424ef380348b7160c27ad235a45e80326c,"Remove boilerplate (#70) + +* Move stuff around + +Signed-off-by: zethson + +* Move back + +Signed-off-by: zethson + +* Fix checkout version + +Signed-off-by: zethson + +* Remove unused imports + +Signed-off-by: zethson + +* Fix docs + +Signed-off-by: zethson + +* Fix docs + +Signed-off-by: zethson + +* promote info to warning where more meaningful + +* exclude slow tests by default, keep them in ci + +* they're also omitted in ci + +--------- + +Signed-off-by: zethson +Co-authored-by: eroell ",[![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030309) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030299) theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,9,5,3,4,FALSE,https://github.com/theislab/expiMap_reproducibility,9,NA,NA,NA @@ -175,7 +210,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,24b1528cce876e4e1986aade4e1f9ba0b6be251a,[status] 2024-12-02 12:13:01 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12139215947) +theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,686b8be1c77a6bb74b03c0ca6a6f4bb517f3de2b,[status] 2024-12-03 12:13:36 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12159308163) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,9,3,4,0,FALSE,https://github.com/theislab/greatpy,9,NA,NA,NA @@ -186,7 +221,6 @@ theislab,icml_cbw_2022_clcvae,theislab/icml_cbw_2022_clcvae,0,3,0,0,FALSE,https: theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,ec9e9f53e59dddcae5fe1464eb36d9adab92411b,Debugging,[![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) theislab,ifcseq,theislab/ifcseq,1,3,0,1,FALSE,https://github.com/theislab/ifcseq,1,NA,NA,NA theislab,inVAE,theislab/inVAE,12,3,0,1,FALSE,https://github.com/theislab/inVAE,12,NA,NA,NA -theislab,inVAE_reproducibility,theislab/inVAE_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/inVAE_reproducibility,0,NA,NA,NA theislab,integraph,theislab/integraph,0,2,4,0,FALSE,https://github.com/theislab/integraph,0,NA,NA,NA theislab,interaction-tools,theislab/interaction-tools,2,4,0,0,FALSE,https://github.com/theislab/interaction-tools,2,NA,NA,NA theislab,interactive_plotting,theislab/interactive_plotting,21,4,11,7,FALSE,https://github.com/theislab/interactive_plotting,21,NA,NA,NA @@ -202,9 +236,7 @@ Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workf theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA -theislab,moscot_notebooks,theislab/moscot_notebooks,7,1,6,3,FALSE,https://github.com/theislab/moscot_notebooks,7,2107658c3ede74ec7c818051bba518143d05db82,"Merge pull request #81 from theislab/add/geodesic_costs - -example on cost geodesic on current example for custom costs",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12110460841) +theislab,moscot_notebooks,theislab/moscot_notebooks,7,1,7,3,FALSE,https://github.com/theislab/moscot_notebooks,7,NA,NA,NA theislab,moslin,theislab/moslin,11,1,0,1,FALSE,https://github.com/theislab/moslin,11,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,4,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubind,28,3f62f838470ebc499540ff54fb8d074363abd7b6,Dropbox URL (typo),[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) @@ -245,11 +277,11 @@ theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,8,5,0,1,FALSE,ht theislab,scPoli_legacy,theislab/scPoli_legacy,2,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,2,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,13,3,2,4,FALSE,https://github.com/theislab/scPoli_reproduce,13,NA,NA,NA theislab,scProtVelo,theislab/scProtVelo,0,1,0,0,FALSE,https://github.com/theislab/scProtVelo,0,NA,NA,NA -theislab,scTab,theislab/scTab,50,4,1,9,FALSE,https://github.com/theislab/scTab,50,NA,NA,NA +theislab,scTab,theislab/scTab,51,4,1,9,FALSE,https://github.com/theislab/scTab,51,NA,NA,NA theislab,sc_analysis_template,theislab/sc_analysis_template,3,3,0,0,FALSE,https://github.com/theislab/sc_analysis_template,3,NA,NA,NA theislab,sc_ketamine_analysis,theislab/sc_ketamine_analysis,0,4,0,0,FALSE,https://github.com/theislab/sc_ketamine_analysis,0,NA,NA,NA theislab,sc_mae,theislab/sc_mae,1,2,0,0,FALSE,https://github.com/theislab/sc_mae,1,NA,NA,NA -theislab,scachepy,theislab/scachepy,7,5,3,1,FALSE,https://github.com/theislab/scachepy,7,NA,NA,NA +theislab,scachepy,theislab/scachepy,8,5,3,1,FALSE,https://github.com/theislab/scachepy,8,NA,NA,NA theislab,scanpy-demo-czbiohub,theislab/scanpy-demo-czbiohub,5,5,0,5,FALSE,https://github.com/theislab/scanpy-demo-czbiohub,5,NA,NA,NA theislab,scanpy-in-R,theislab/scanpy-in-R,13,3,1,0,FALSE,https://github.com/theislab/scanpy-in-R,13,NA,NA,NA theislab,scanpy.org,theislab/scanpy.org,0,7,1,0,FALSE,https://github.com/theislab/scanpy.org,0,NA,NA,NA @@ -266,7 +298,7 @@ theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://gi theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA theislab,scgen,theislab/scgen,270,9,27,56,FALSE,https://github.com/theislab/scgen,270,NA,NA,NA theislab,scgen-reproducibility,theislab/scgen-reproducibility,22,4,6,8,FALSE,https://github.com/theislab/scgen-reproducibility,22,NA,NA,NA -theislab,scib,theislab/scib,312,14,42,63,FALSE,https://github.com/theislab/scib,NA,acfde787873108439a66a9bb25f493119b3e87df,Bump version: 1.1.5 → 1.1.6,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033984) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033925) +theislab,scib,theislab/scib,313,14,43,63,FALSE,https://github.com/theislab/scib,NA,acfde787873108439a66a9bb25f493119b3e87df,Bump version: 1.1.5 → 1.1.6,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/11973033984) theislab,scib-pipeline,theislab/scib-pipeline,66,7,16,28,FALSE,https://github.com/theislab/scib-pipeline,66,NA,NA,NA theislab,scib-reproducibility,theislab/scib-reproducibility,55,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,55,NA,NA,NA theislab,scvelo,theislab/scvelo,419,13,62,103,FALSE,https://github.com/theislab/scvelo,419,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) @@ -305,7 +337,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,788,19,73,189,FALSE,https://github.com/theislab/single-cell-best-practices,788,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,789,19,73,189,FALSE,https://github.com/theislab/single-cell-best-practices,789,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) * fix additional ""does"" @@ -332,12 +364,12 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,788,19,7 * fix typo * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,271,14,33,31,FALSE,https://github.com/theislab/single-cell-transformer-papers,271,e775edd612406375ac851e957231f2ecf4c74fb2,add new entry instruction,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12121943778) +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,274,14,33,31,FALSE,https://github.com/theislab/single-cell-transformer-papers,274,e775edd612406375ac851e957231f2ecf4c74fb2,add new entry instruction,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12121943778) theislab,single-cell-tutorial,theislab/single-cell-tutorial,1410,30,21,464,FALSE,https://github.com/theislab/single-cell-tutorial,1410,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,29,3,11,7,FALSE,https://github.com/theislab/spapros,29,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer -adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12131223460) +adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12151299217) theislab,spapros,theislab/spapros,29,3,11,7,FALSE,https://github.com/theislab/spapros,29,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
theislab/single-cell-best-practices788789 19 73 189 theislab/cellrank 352 82322 46 b5e993
theislab/scib312313 144243 63 - acfde7
theislab/single-cell-transformer-papers271274 14 33 31 theislab/ehrapy 238 54019 - - - -4220 2e8240
theislab/ehrapy 238 540194220 c4721f
11 7 - 1ec08e
8020e7
theislab/moscot_notebooks7163210765
theislab/spapros-pipeline 7 2 fe84cf
theislab/cellrank_notebooks 6 4 677784
theislab/ehrapy-datasets 6 2 e441a5
theislab/ehrdata52191 +e06ea3
theislab/gh-dashboard 3 2 0 024b152686b8b
theislab/spatialdata-db
theislab/chemCPA105104 5 12 24
theislab/scTab5051 4 1 9 10
theislab/DRVI28112
theislab/batchglm 27 3 47 9
theislab/graph_abstraction 26 8 0 10
theislab/prophet 26 5 2 2
theislab/DRVI25112
theislab/Covid_meta_analysis 24 6
theislab/2020_Mayr8608
theislab/jump-cpg0016-segmentation 8 1 2 0
theislab/ncem_benchmarks 8 4 4 2
theislab/PathReg 8 3 0 0
theislab/sc-best-practices-ce 8 8 2 3
theislab/scachepy8531
theislab/scCODA_reproducibility 8 11
theislab/2020_Mayr7608
theislab/cpa-reproducibility 7 2 1 1
theislab/ehrapy-tutorials 7 3 0 1
theislab/moscot_notebooks7173
theislab/mouse_cross-condition_pancreatic_islet_atlas 7 4
theislab/scachepy7531
theislab/CFGen 6 1 1 4
theislab/disent 6 3 0 0
theislab/intercode 6 3 1 1
theislab/multimil_reproducibility 6 3 4 1
theislab/pancreatic-endocrinogenesis 6 3 0 7
theislab/sfaira_tutorials 6 4 4 2
theislab/theislab.github.io 6 2 9 0
theislab/trVAE_reproducibility 6 3 2 7
theislab/atlas-feature-selection-benchmark 5 2 0 0
theislab/ehrdata52191
theislab/flowVI 5 0
theislab/inVAE_reproducibility0200
theislab/ipsc_ipd_analysis 0 3 0 0
theislab/LungAgingAtlas 0 5 0 0
theislab/MetaMap-web 0 4 2 0
theislab/mubind-benchmark 0 2 19 0
theislab/multicpa-reproducibility 0 2 0 0
theislab/organoid_dexamethason_stimulation 0 3 0 1
theislab/pancreas-targeted_pharmacology 0 6 1 2
theislab/pdac_analysis 0 2 0 0
theislab/prophet-reproducibility 0 3 0 0
theislab/reproducability_AutoGeneS 0 3 0 0
theislab/reproducibility_AutoGeneS 0 3 0 0
theislab/scanpy.org 0 7 1 0
theislab/scanpy_neighbors 0 3 0 1
theislab/scarches_notebooks 0 3 0 0
theislab/scProtVelo 0 1 0 0
theislab/sc_ketamine_analysis 0 4 0 0
theislab/sfaira-portal 0 4 2 0
theislab/sfaira-site 0 4 0 0
theislab/sfaira_benchmarks 0 3 0 0
theislab/sfaira_extension 0 3 1 0
theislab/spapros-smk 0 2 0 1
theislab/spatialdata-db-submission 0 2