From 416dc691b5f5209fc9f320c785da9d539de8e929 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Sun, 3 Nov 2024 12:12:25 +0000 Subject: [PATCH] [status] 2024-11-03 12:12:25 UTC --- README.md | 32 +++++++++++++------------- index.html | 66 +++++++++++++++++++++++++++--------------------------- repos.csv | 30 ++++++++++++------------- 3 files changed, 64 insertions(+), 64 deletions(-) diff --git a/README.md b/README.md index c9b57dd..2d35a89 100644 --- a/README.md +++ b/README.md @@ -2,15 +2,15 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-11-02 12:11:00 UTC +2024-11-03 12:10:56 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 767 | 18 | 69 | 181 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318087) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318021) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318023) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318016) | 86e7b2 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 768 | 18 | 69 | 182 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318087) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318021) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318023) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318016) | 86e7b2 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 417 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 417 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) | 82248b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 20 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) | 82248b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 347 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | | [theislab/scib](https://github.com/theislab/scib) | 299 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 223 | 5 | 46 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11619320831) | 0399b2 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 223 | 5 | 46 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | @@ -21,22 +21,22 @@ GitHub Dashboard | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 128 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/11590151280) | 476bbd | -| [theislab/moscot](https://github.com/theislab/moscot) | 112 | 3 | 41 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | -| [theislab/moscot](https://github.com/theislab/moscot) | 112 | 3 | 41 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234289) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234297) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234294) | 655e17 | +| [theislab/moscot](https://github.com/theislab/moscot) | 114 | 3 | 41 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | +| [theislab/moscot](https://github.com/theislab/moscot) | 114 | 3 | 41 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234289) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234297) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234294) | 655e17 | | [theislab/ncem](https://github.com/theislab/ncem) | 102 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 32 | 2 | 2 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/mubind](https://github.com/theislab/mubind) | 27 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421967) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421980) | 1d15b7 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11638743183) | e8a37c | -| [theislab/multimil](https://github.com/theislab/multimil) | 18 | 5 | 4 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11624599035) | 445402 | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11647392781) | e8a37c | +| [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 4 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11624599035) | 445402 | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11590146783) | 663945 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 0 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | | [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 5 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11545114879) | 210765 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11642507506) | cd6cf9 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11651127140) | 72d8ec | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11624599954) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -44,18 +44,18 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1384 | 30 | 21 | 457 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1386 | 30 | 21 | 458 | | [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 50 | 51 | -| [theislab/scgen](https://github.com/theislab/scgen) | 264 | 9 | 28 | 56 | +| [theislab/scgen](https://github.com/theislab/scgen) | 266 | 9 | 28 | 56 | | [theislab/dca](https://github.com/theislab/dca) | 247 | 11 | 32 | 71 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 239 | 13 | 25 | 28 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 240 | 13 | 25 | 28 | | [theislab/paga](https://github.com/theislab/paga) | 206 | 10 | 23 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 193 | 7 | 108 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 154 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 150 | 9 | 8 | 24 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 142 | 5 | 6 | 12 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 103 | 5 | 10 | 24 | -| [theislab/cpa](https://github.com/theislab/cpa) | 86 | 5 | 20 | 17 | +| [theislab/cpa](https://github.com/theislab/cpa) | 87 | 5 | 20 | 17 | | [theislab/destiny](https://github.com/theislab/destiny) | 76 | 5 | 32 | 11 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 66 | 7 | 16 | 27 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 60 | 4 | 14 | 2 | @@ -75,7 +75,7 @@ GitHub Dashboard | [theislab/prophet](https://github.com/theislab/prophet) | 25 | 5 | 2 | 2 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | -| [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 20 | 4 | 6 | 8 | +| [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 21 | 4 | 6 | 8 | | [theislab/multigrate](https://github.com/theislab/multigrate) | 15 | 3 | 7 | 6 | | [theislab/campa](https://github.com/theislab/campa) | 14 | 4 | 6 | 4 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 0 | 8 | @@ -118,16 +118,16 @@ GitHub Dashboard | [theislab/CFGen](https://github.com/theislab/CFGen) | 6 | 1 | 2 | 4 | | [theislab/disent](https://github.com/theislab/disent) | 6 | 3 | 0 | 0 | | [theislab/intercode](https://github.com/theislab/intercode) | 6 | 3 | 1 | 1 | +| [theislab/multimil_reproducibility](https://github.com/theislab/multimil_reproducibility) | 6 | 3 | 4 | 0 | | [theislab/pancreatic-endocrinogenesis](https://github.com/theislab/pancreatic-endocrinogenesis) | 6 | 3 | 0 | 6 | | [theislab/sfaira_tutorials](https://github.com/theislab/sfaira_tutorials) | 6 | 4 | 4 | 2 | | [theislab/theislab.github.io](https://github.com/theislab/theislab.github.io) | 6 | 2 | 9 | 0 | | [theislab/trVAE_reproducibility](https://github.com/theislab/trVAE_reproducibility) | 6 | 3 | 2 | 6 | | [theislab/atlas-feature-selection-benchmark](https://github.com/theislab/atlas-feature-selection-benchmark) | 5 | 2 | 0 | 0 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 21 | 1 | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 23 | 1 | | [theislab/flowVI](https://github.com/theislab/flowVI) | 5 | 3 | 0 | 0 | | [theislab/InterpretableAutoencoders](https://github.com/theislab/InterpretableAutoencoders) | 5 | 4 | 0 | 0 | | [theislab/kbranches](https://github.com/theislab/kbranches) | 5 | 7 | 0 | 0 | -| [theislab/multimil_reproducibility](https://github.com/theislab/multimil_reproducibility) | 5 | 3 | 4 | 0 | | [theislab/scanpy-demo-czbiohub](https://github.com/theislab/scanpy-demo-czbiohub) | 5 | 5 | 0 | 5 | | [theislab/singlecell_proteomics](https://github.com/theislab/singlecell_proteomics) | 5 | 5 | 6 | 3 | | [theislab/ssl_in_scg](https://github.com/theislab/ssl_in_scg) | 5 | 1 | 0 | 1 | diff --git a/index.html b/index.html index 176019f..e2f0019 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index 440d8b6..1e654ee 100644 --- a/repos.csv +++ b/repos.csv @@ -46,8 +46,8 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,6,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,347,8,20,46,FALSE,https://github.com/theislab/cellrank,347,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) -theislab,cellrank,theislab/cellrank,347,8,20,46,FALSE,https://github.com/theislab/cellrank,347,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) +theislab,cellrank,theislab/cellrank,347,8,19,46,FALSE,https://github.com/theislab/cellrank,347,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545065828) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11545154702) +theislab,cellrank,theislab/cellrank,347,8,19,46,FALSE,https://github.com/theislab/cellrank,347,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) * chore: bump ruff pre-commit hook version @@ -132,7 +132,7 @@ theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluatio theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,4,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,4,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,5,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,86,5,20,17,FALSE,https://github.com/theislab/cpa,86,NA,NA,NA +theislab,cpa,theislab/cpa,87,5,20,17,FALSE,https://github.com/theislab/cpa,87,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,7,2,1,1,FALSE,https://github.com/theislab/cpa-reproducibility,7,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,10,2,11,2,FALSE,https://github.com/theislab/cross_system_integration,10,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA @@ -176,7 +176,7 @@ change diabetes dataset doc",[![](https://github.com/theislab/ehrapy-datasets/wo theislab,ehrapy-reproducibility,theislab/ehrapy-reproducibility,2,1,1,0,FALSE,https://github.com/theislab/ehrapy-reproducibility,2,NA,NA,NA theislab,ehrapy-site,theislab/ehrapy-site,1,2,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,7,3,0,2,FALSE,https://github.com/theislab/ehrapy-tutorials,7,NA,NA,NA -theislab,ehrdata,theislab/ehrdata,5,2,21,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA +theislab,ehrdata,theislab/ehrdata,5,2,23,1,FALSE,https://github.com/theislab/ehrdata,5,NA,NA,NA theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,9,5,4,4,FALSE,https://github.com/theislab/expiMap_reproducibility,9,NA,NA,NA @@ -188,7 +188,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,9,4,0,1,FALSE,http theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,cd6cf9b091b1fd626da1ff1276f48a0b2d28fabe,[status] 2024-11-01 12:12:24 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11642507506) +theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,72d8ece2af9bf78899e1f392075efd108b3243d2,[status] 2024-11-02 12:13:15 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11651127140) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,32,2,2,0,FALSE,https://github.com/theislab/graphcompass,32,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,7,3,4,0,FALSE,https://github.com/theislab/greatpy,7,NA,NA,NA @@ -208,10 +208,10 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,8,1,2,0,FA theislab,kBET,theislab/kBET,154,8,9,23,FALSE,https://github.com/theislab/kBET,154,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,2,3,0,2,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,2,NA,NA,NA -theislab,moscot,theislab/moscot,112,3,41,9,FALSE,https://github.com/theislab/moscot,112,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr +theislab,moscot,theislab/moscot,114,3,41,9,FALSE,https://github.com/theislab/moscot,114,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) -theislab,moscot,theislab/moscot,112,3,41,9,FALSE,https://github.com/theislab/moscot,112,655e179acd5f10dc1ea56e3094b95b0fb49c5b3f,"Merge pull request #759 from theislab/pre-commit-ci-update-config +theislab,moscot,theislab/moscot,114,3,41,9,FALSE,https://github.com/theislab/moscot,114,655e179acd5f10dc1ea56e3094b95b0fb49c5b3f,"Merge pull request #759 from theislab/pre-commit-ci-update-config [pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234289) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234297) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/11588234294) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,1,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA @@ -228,8 +228,8 @@ theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/m theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA theislab,multigrate,theislab/multigrate,15,3,7,6,FALSE,https://github.com/theislab/multigrate,15,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA -theislab,multimil,theislab/multimil,18,5,4,3,FALSE,https://github.com/theislab/multimil,18,445402e3bed1cb1bfef16ca2cdaab20a13f4d0dc,added imputation functionality,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11624599035) -theislab,multimil_reproducibility,theislab/multimil_reproducibility,5,3,4,0,FALSE,https://github.com/theislab/multimil_reproducibility,5,NA,NA,NA +theislab,multimil,theislab/multimil,19,5,4,3,FALSE,https://github.com/theislab/multimil,19,445402e3bed1cb1bfef16ca2cdaab20a13f4d0dc,added imputation functionality,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11624599035) +theislab,multimil_reproducibility,theislab/multimil_reproducibility,6,3,4,0,FALSE,https://github.com/theislab/multimil_reproducibility,6,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA theislab,ncem,theislab/ncem,102,6,28,13,FALSE,https://github.com/theislab/ncem,102,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) @@ -274,8 +274,8 @@ Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.gi theislab,scarches,theislab/scarches,335,12,50,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA -theislab,scgen,theislab/scgen,264,9,28,56,FALSE,https://github.com/theislab/scgen,264,NA,NA,NA -theislab,scgen-reproducibility,theislab/scgen-reproducibility,20,4,6,8,FALSE,https://github.com/theislab/scgen-reproducibility,20,NA,NA,NA +theislab,scgen,theislab/scgen,266,9,28,56,FALSE,https://github.com/theislab/scgen,266,NA,NA,NA +theislab,scgen-reproducibility,theislab/scgen-reproducibility,21,4,6,8,FALSE,https://github.com/theislab/scgen-reproducibility,21,NA,NA,NA theislab,scib,theislab/scib,299,14,42,63,FALSE,https://github.com/theislab/scib,NA,5547cd1f6b24eed7499c6492bf5c1ef4e2ef9f7a,"Skip labels before loop (#394) * Skip labels before loop @@ -323,11 +323,11 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,767,18,69,181,FALSE,https://github.com/theislab/single-cell-best-practices,767,86e7b29ddfe80743bb92a944c0adbb58a138b742,"Update scrna_seq.md (#301) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,768,18,69,182,FALSE,https://github.com/theislab/single-cell-best-practices,768,86e7b29ddfe80743bb92a944c0adbb58a138b742,"Update scrna_seq.md (#301) Frederick not Friedrich Sanger",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318087) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318021) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318023) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11516318016) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,239,13,25,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,239,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1384,30,21,457,FALSE,https://github.com/theislab/single-cell-tutorial,1384,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,240,13,25,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,240,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1386,30,21,458,FALSE,https://github.com/theislab/single-cell-tutorial,1386,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,1d15b73cd15568193d048521786d4aa0d00b265a,"[DEPENDABOT]: Bump networkx from 3.2.1 to 3.4.2 in /docs @@ -345,7 +345,7 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421967) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11446421980) theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11638743183) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11647392781) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA
theislab/single-cell-best-practices767768 18 69181182 @@ -107,7 +107,7 @@

GitHub Dashboard

theislab/cellrank 347 82019 46 theislab/cellrank 347 82019 46 b5e993
theislab/moscot112114 3 41 9
theislab/moscot112114 3 41 9 13 6 - e8a37c
theislab/multimil1819 5 4 3 2 0 0cd6cf972d8ec
theislab/spatialdata-db
theislab/single-cell-tutorial13841386 30 21457458
theislab/scarches
theislab/scgen264266 9 28 56
theislab/single-cell-transformer-papers239240 13 25 28
theislab/cpa8687 5 20 17
theislab/scgen-reproducibility2021 4 6 8 1
theislab/multimil_reproducibility6340
theislab/pancreatic-endocrinogenesis 6 3 0 6
theislab/sfaira_tutorials 6 4 4 2
theislab/theislab.github.io 6 2 9 0
theislab/trVAE_reproducibility 6 3 2 6
theislab/atlas-feature-selection-benchmark 5 2 0 0
theislab/ehrdata 5 22123 1
theislab/flowVI 5 3 0 0
theislab/InterpretableAutoencoders 5 4 0 0
theislab/kbranches 5 7 0 0
theislab/multimil_reproducibility5340
theislab/scanpy-demo-czbiohub 5