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pdm.lock
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[[package]]
name = "appnope"
version = "0.1.3"
summary = "Disable App Nap on macOS >= 10.9"
[[package]]
name = "asttokens"
version = "2.2.1"
summary = "Annotate AST trees with source code positions"
dependencies = [
"six",
]
[[package]]
name = "backcall"
version = "0.2.0"
summary = "Specifications for callback functions passed in to an API"
[[package]]
name = "bleach"
version = "5.0.1"
requires_python = ">=3.7"
summary = "An easy safelist-based HTML-sanitizing tool."
dependencies = [
"six>=1.9.0",
"webencodings",
]
[[package]]
name = "cachecontrol"
version = "0.12.11"
requires_python = ">=3.6"
summary = "httplib2 caching for requests"
dependencies = [
"msgpack>=0.5.2",
"requests",
]
[[package]]
name = "certifi"
version = "2022.12.7"
requires_python = ">=3.6"
summary = "Python package for providing Mozilla's CA Bundle."
[[package]]
name = "cffi"
version = "1.15.1"
summary = "Foreign Function Interface for Python calling C code."
dependencies = [
"pycparser",
]
[[package]]
name = "charset-normalizer"
version = "2.1.1"
requires_python = ">=3.6.0"
summary = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
[[package]]
name = "colorama"
version = "0.4.6"
requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
summary = "Cross-platform colored terminal text."
[[package]]
name = "commonmark"
version = "0.9.1"
summary = "Python parser for the CommonMark Markdown spec"
[[package]]
name = "contourpy"
version = "1.0.6"
requires_python = ">=3.7"
summary = "Python library for calculating contours of 2D quadrilateral grids"
dependencies = [
"numpy>=1.16",
]
[[package]]
name = "cryptography"
version = "38.0.4"
requires_python = ">=3.6"
summary = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
dependencies = [
"cffi>=1.12",
]
[[package]]
name = "cycler"
version = "0.11.0"
requires_python = ">=3.6"
summary = "Composable style cycles"
[[package]]
name = "cython"
version = "0.29.32"
requires_python = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
summary = "The Cython compiler for writing C extensions for the Python language."
[[package]]
name = "decorator"
version = "5.1.1"
requires_python = ">=3.5"
summary = "Decorators for Humans"
[[package]]
name = "docutils"
version = "0.19"
requires_python = ">=3.7"
summary = "Docutils -- Python Documentation Utilities"
[[package]]
name = "executing"
version = "1.2.0"
summary = "Get the currently executing AST node of a frame, and other information"
[[package]]
name = "fonttools"
version = "4.38.0"
requires_python = ">=3.7"
summary = "Tools to manipulate font files"
[[package]]
name = "h5py"
version = "3.7.0"
requires_python = ">=3.7"
summary = "Read and write HDF5 files from Python"
dependencies = [
"numpy>=1.14.5",
]
[[package]]
name = "hdmedians"
version = "0.14.2"
summary = "High-dimensional medians"
dependencies = [
"Cython>=0.23",
"numpy",
]
[[package]]
name = "idna"
version = "3.4"
requires_python = ">=3.5"
summary = "Internationalized Domain Names in Applications (IDNA)"
[[package]]
name = "importlib-metadata"
version = "5.1.0"
requires_python = ">=3.7"
summary = "Read metadata from Python packages"
dependencies = [
"zipp>=0.5",
]
[[package]]
name = "ipython"
version = "8.7.0"
requires_python = ">=3.8"
summary = "IPython: Productive Interactive Computing"
dependencies = [
"appnope; sys_platform == \"darwin\"",
"backcall",
"colorama; sys_platform == \"win32\"",
"decorator",
"jedi>=0.16",
"matplotlib-inline",
"pexpect>4.3; sys_platform != \"win32\"",
"pickleshare",
"prompt-toolkit<3.1.0,>=3.0.11",
"pygments>=2.4.0",
"stack-data",
"traitlets>=5",
]
[[package]]
name = "jaraco.classes"
version = "3.2.3"
requires_python = ">=3.7"
summary = "Utility functions for Python class constructs"
dependencies = [
"more-itertools",
]
[[package]]
name = "jedi"
version = "0.18.2"
requires_python = ">=3.6"
summary = "An autocompletion tool for Python that can be used for text editors."
dependencies = [
"parso<0.9.0,>=0.8.0",
]
[[package]]
name = "jeepney"
version = "0.8.0"
requires_python = ">=3.7"
summary = "Low-level, pure Python DBus protocol wrapper."
[[package]]
name = "joblib"
version = "1.2.0"
requires_python = ">=3.7"
summary = "Lightweight pipelining with Python functions"
[[package]]
name = "keyring"
version = "23.11.0"
requires_python = ">=3.7"
summary = "Store and access your passwords safely."
dependencies = [
"SecretStorage>=3.2; sys_platform == \"linux\"",
"importlib-metadata>=4.11.4; python_version < \"3.12\"",
"jaraco.classes",
"jeepney>=0.4.2; sys_platform == \"linux\"",
"pywin32-ctypes!=0.1.0,!=0.1.1; sys_platform == \"win32\"",
]
[[package]]
name = "kiwisolver"
version = "1.4.4"
requires_python = ">=3.7"
summary = "A fast implementation of the Cassowary constraint solver"
[[package]]
name = "lockfile"
version = "0.12.2"
summary = "Platform-independent file locking module"
[[package]]
name = "matplotlib"
version = "3.6.2"
requires_python = ">=3.8"
summary = "Python plotting package"
dependencies = [
"contourpy>=1.0.1",
"cycler>=0.10",
"fonttools>=4.22.0",
"kiwisolver>=1.0.1",
"numpy>=1.19",
"packaging>=20.0",
"pillow>=6.2.0",
"pyparsing>=2.2.1",
"python-dateutil>=2.7",
]
[[package]]
name = "matplotlib-inline"
version = "0.1.6"
requires_python = ">=3.5"
summary = "Inline Matplotlib backend for Jupyter"
dependencies = [
"traitlets",
]
[[package]]
name = "more-itertools"
version = "9.0.0"
requires_python = ">=3.7"
summary = "More routines for operating on iterables, beyond itertools"
[[package]]
name = "msgpack"
version = "1.0.4"
summary = "MessagePack serializer"
[[package]]
name = "natsort"
version = "8.2.0"
requires_python = ">=3.6"
summary = "Simple yet flexible natural sorting in Python."
[[package]]
name = "numpy"
version = "1.23.5"
requires_python = ">=3.8"
summary = "NumPy is the fundamental package for array computing with Python."
[[package]]
name = "packaging"
version = "22.0"
requires_python = ">=3.7"
summary = "Core utilities for Python packages"
[[package]]
name = "pandas"
version = "1.5.2"
requires_python = ">=3.8"
summary = "Powerful data structures for data analysis, time series, and statistics"
dependencies = [
"numpy>=1.20.3; python_version < \"3.10\"",
"numpy>=1.21.0; python_version >= \"3.10\"",
"numpy>=1.23.2; python_version >= \"3.11\"",
"python-dateutil>=2.8.1",
"pytz>=2020.1",
]
[[package]]
name = "parasail"
version = "1.3.3"
summary = "pairwise sequence alignment library"
dependencies = [
"numpy",
]
[[package]]
name = "parso"
version = "0.8.3"
requires_python = ">=3.6"
summary = "A Python Parser"
[[package]]
name = "pexpect"
version = "4.8.0"
summary = "Pexpect allows easy control of interactive console applications."
dependencies = [
"ptyprocess>=0.5",
]
[[package]]
name = "pickleshare"
version = "0.7.5"
summary = "Tiny 'shelve'-like database with concurrency support"
[[package]]
name = "pillow"
version = "9.3.0"
requires_python = ">=3.7"
summary = "Python Imaging Library (Fork)"
[[package]]
name = "pkginfo"
version = "1.9.2"
requires_python = ">=3.6"
summary = "Query metadatdata from sdists / bdists / installed packages."
[[package]]
name = "prompt-toolkit"
version = "3.0.36"
requires_python = ">=3.6.2"
summary = "Library for building powerful interactive command lines in Python"
dependencies = [
"wcwidth",
]
[[package]]
name = "ptyprocess"
version = "0.7.0"
summary = "Run a subprocess in a pseudo terminal"
[[package]]
name = "pure-eval"
version = "0.2.2"
summary = "Safely evaluate AST nodes without side effects"
[[package]]
name = "pycparser"
version = "2.21"
requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
summary = "C parser in Python"
[[package]]
name = "pygments"
version = "2.13.0"
requires_python = ">=3.6"
summary = "Pygments is a syntax highlighting package written in Python."
[[package]]
name = "pyparsing"
version = "3.0.9"
requires_python = ">=3.6.8"
summary = "pyparsing module - Classes and methods to define and execute parsing grammars"
[[package]]
name = "python-dateutil"
version = "2.8.2"
requires_python = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
summary = "Extensions to the standard Python datetime module"
dependencies = [
"six>=1.5",
]
[[package]]
name = "pytz"
version = "2022.6"
summary = "World timezone definitions, modern and historical"
[[package]]
name = "pywin32-ctypes"
version = "0.2.0"
summary = "UNKNOWN"
[[package]]
name = "readme-renderer"
version = "37.3"
requires_python = ">=3.7"
summary = "readme_renderer is a library for rendering \"readme\" descriptions for Warehouse"
dependencies = [
"Pygments>=2.5.1",
"bleach>=2.1.0",
"docutils>=0.13.1",
]
[[package]]
name = "requests"
version = "2.28.1"
requires_python = ">=3.7, <4"
summary = "Python HTTP for Humans."
dependencies = [
"certifi>=2017.4.17",
"charset-normalizer<3,>=2",
"idna<4,>=2.5",
"urllib3<1.27,>=1.21.1",
]
[[package]]
name = "requests-toolbelt"
version = "0.10.1"
requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
summary = "A utility belt for advanced users of python-requests"
dependencies = [
"requests<3.0.0,>=2.0.1",
]
[[package]]
name = "rfc3986"
version = "2.0.0"
requires_python = ">=3.7"
summary = "Validating URI References per RFC 3986"
[[package]]
name = "rich"
version = "12.6.0"
requires_python = ">=3.6.3,<4.0.0"
summary = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
dependencies = [
"commonmark<0.10.0,>=0.9.0",
"pygments<3.0.0,>=2.6.0",
"typing-extensions<5.0,>=4.0.0; python_version < \"3.9\"",
]
[[package]]
name = "scikit-bio"
version = "0.5.7"
summary = "Data structures, algorithms and educational resources for bioinformatics."
dependencies = [
"CacheControl>=0.11.5",
"IPython>=3.2.0",
"decorator>=3.4.2",
"h5py",
"h5py>=2.9.0",
"hdmedians>=0.14.1",
"lockfile>=0.10.2",
"matplotlib>=1.4.3",
"natsort>=4.0.3",
"numpy>=1.9.2",
"pandas>=1.0.0",
"scikit-learn>=0.19.1",
"scipy>=1.3.0",
]
[[package]]
name = "scikit-learn"
version = "1.2.0"
requires_python = ">=3.8"
summary = "A set of python modules for machine learning and data mining"
dependencies = [
"joblib>=1.1.1",
"numpy>=1.17.3",
"scipy>=1.3.2",
"threadpoolctl>=2.0.0",
]
[[package]]
name = "scipy"
version = "1.9.3"
requires_python = ">=3.8"
summary = "Fundamental algorithms for scientific computing in Python"
dependencies = [
"numpy<1.26.0,>=1.18.5",
]
[[package]]
name = "secretstorage"
version = "3.3.3"
requires_python = ">=3.6"
summary = "Python bindings to FreeDesktop.org Secret Service API"
dependencies = [
"cryptography>=2.0",
"jeepney>=0.6",
]
[[package]]
name = "six"
version = "1.16.0"
requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
summary = "Python 2 and 3 compatibility utilities"
[[package]]
name = "stack-data"
version = "0.6.2"
summary = "Extract data from python stack frames and tracebacks for informative displays"
dependencies = [
"asttokens>=2.1.0",
"executing>=1.2.0",
"pure-eval",
]
[[package]]
name = "threadpoolctl"
version = "3.1.0"
requires_python = ">=3.6"
summary = "threadpoolctl"
[[package]]
name = "traitlets"
version = "5.7.0"
requires_python = ">=3.7"
summary = "Traitlets Python configuration system"
[[package]]
name = "twine"
version = "4.0.2"
requires_python = ">=3.7"
summary = "Collection of utilities for publishing packages on PyPI"
dependencies = [
"importlib-metadata>=3.6",
"keyring>=15.1",
"pkginfo>=1.8.1",
"readme-renderer>=35.0",
"requests-toolbelt!=0.9.0,>=0.8.0",
"requests>=2.20",
"rfc3986>=1.4.0",
"rich>=12.0.0",
"urllib3>=1.26.0",
]
[[package]]
name = "typing-extensions"
version = "4.4.0"
requires_python = ">=3.7"
summary = "Backported and Experimental Type Hints for Python 3.7+"
[[package]]
name = "urllib3"
version = "1.26.13"
requires_python = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
summary = "HTTP library with thread-safe connection pooling, file post, and more."
[[package]]
name = "wcwidth"
version = "0.2.5"
summary = "Measures the displayed width of unicode strings in a terminal"
[[package]]
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