Catch-all: XYZ doesn't work with SpatialData

[timtreis]

Please just post/link functions here that do not work with SpatialData - we will then gradually port those over.

[timtreis]

Essentially tried following the Squidpy Xenium tutorial but using a spatialdata object. Failed when I tried to color my plot by Leiden colors.

[giovp]

Essentially tried following the Squidpy Xenium tutorial but using a spatialdata object. Failed when I tried to color my plot by Leiden colors.

with this?

scverse/squidpy_notebooks#125

[timtreis]

No, this one seems to basically just extract the adata and then does normal things that were possible before. I think the goal should be to directly pass either the sdata.tables[...] or sdata and table_name (if the latter cannot be inferred), wdyt? 🤔

[LLehner]

No, this one seems to basically just extract the adata and then does normal things that were possible before. I think the goal should be to directly pass either the sdata.tables[...] or sdata and table_name (if the latter cannot be inferred), wdyt? 🤔

We did that initially, but to keep verbosity low, chose the adata approach.