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Updated Home (org)
Testing permissions (added a space).
Re-incorporates separate wiki pages into single reference document. While very wiki-like, the atomization of the reference document into separate wiki files was proving unmanageable, especially since the primary function of this collection of documents, it turns out, is to be formatted as a PDF or an HTML document and sent to reviewers, contractors, etc. I will continue to maintain this reference document in .org format. The current version of GitHub's Gollum wiki engine doesn't produce a nice table of contents for .org files, so reading the Reference document directly from the GitHub wiki is a bit ponderous.
Filling out links on the wiki home page.
Minor changes to Home and Project-Layout pages.
Updated Home (markdown => org)