From 6d1979797752d4063c5b6f5cbdc08ebb468e3ff5 Mon Sep 17 00:00:00 2001
From: JuanfeSanahuja <juanfe.sanahuja@zettagenomics.com>
Date: Thu, 3 Oct 2024 13:52:37 +0200
Subject: [PATCH] Port Patch 3.2.1 -> 4.0.0 XB 2.2.1 -> 3.0.0 #TASK-6780

---
 opencga-analysis/pom.xml                        |  2 +-
 opencga-app/pom.xml                             |  2 +-
 opencga-catalog/pom.xml                         |  2 +-
 opencga-client/pom.xml                          |  2 +-
 opencga-clinical/pom.xml                        |  2 +-
 opencga-core/pom.xml                            |  2 +-
 opencga-master/pom.xml                          |  2 +-
 opencga-server/pom.xml                          |  2 +-
 opencga-storage/opencga-storage-app/pom.xml     |  2 +-
 .../opencga-storage-benchmark/pom.xml           |  2 +-
 opencga-storage/opencga-storage-core/pom.xml    |  2 +-
 .../opencga-storage-hadoop-compat-api/pom.xml   |  2 +-
 .../pom.xml                                     |  2 +-
 .../pom.xml                                     |  2 +-
 .../pom.xml                                     |  2 +-
 .../opencga-storage-hadoop-compat/pom.xml       |  2 +-
 .../opencga-storage-hadoop-core/pom.xml         |  2 +-
 .../opencga-storage-hadoop-lib-emr6.1/pom.xml   |  2 +-
 .../opencga-storage-hadoop-lib-emr6.13/pom.xml  |  2 +-
 .../opencga-storage-hadoop-lib-hdi5.1/pom.xml   |  2 +-
 .../opencga-storage-hadoop-lib-hdp3.1/pom.xml   |  2 +-
 .../opencga-storage-hadoop-lib/pom.xml          |  2 +-
 opencga-storage/opencga-storage-hadoop/pom.xml  |  2 +-
 opencga-storage/opencga-storage-server/pom.xml  |  2 +-
 opencga-storage/pom.xml                         |  2 +-
 opencga-test/pom.xml                            |  2 +-
 pom.xml                                         | 17 ++++++++---------
 27 files changed, 34 insertions(+), 35 deletions(-)

diff --git a/opencga-analysis/pom.xml b/opencga-analysis/pom.xml
index 44dfcada22..ad1a6f765e 100644
--- a/opencga-analysis/pom.xml
+++ b/opencga-analysis/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-app/pom.xml b/opencga-app/pom.xml
index 7c86232e02..76ea292d61 100644
--- a/opencga-app/pom.xml
+++ b/opencga-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-catalog/pom.xml b/opencga-catalog/pom.xml
index 32968f648d..df6a3d06d7 100644
--- a/opencga-catalog/pom.xml
+++ b/opencga-catalog/pom.xml
@@ -23,7 +23,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-client/pom.xml b/opencga-client/pom.xml
index 7af1fa42fb..ee6e9dbf30 100644
--- a/opencga-client/pom.xml
+++ b/opencga-client/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-clinical/pom.xml b/opencga-clinical/pom.xml
index 3aad7a1750..226fd9bac1 100644
--- a/opencga-clinical/pom.xml
+++ b/opencga-clinical/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
     <modelVersion>4.0.0</modelVersion>
diff --git a/opencga-core/pom.xml b/opencga-core/pom.xml
index 93b53c60ad..c1fb9ac506 100644
--- a/opencga-core/pom.xml
+++ b/opencga-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-master/pom.xml b/opencga-master/pom.xml
index dfd7509928..ca1c6c3c21 100644
--- a/opencga-master/pom.xml
+++ b/opencga-master/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>opencga</artifactId>
         <groupId>org.opencb.opencga</groupId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-server/pom.xml b/opencga-server/pom.xml
index 9a48c3cf8e..0a226d06df 100644
--- a/opencga-server/pom.xml
+++ b/opencga-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-app/pom.xml b/opencga-storage/opencga-storage-app/pom.xml
index ff1b502532..b4771cd977 100644
--- a/opencga-storage/opencga-storage-app/pom.xml
+++ b/opencga-storage/opencga-storage-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-benchmark/pom.xml b/opencga-storage/opencga-storage-benchmark/pom.xml
index d2ef8e6ef9..c6d485f309 100644
--- a/opencga-storage/opencga-storage-benchmark/pom.xml
+++ b/opencga-storage/opencga-storage-benchmark/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <artifactId>opencga-storage</artifactId>
         <groupId>org.opencb.opencga</groupId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-core/pom.xml b/opencga-storage/opencga-storage-core/pom.xml
index 16196aae55..0142ea1ddf 100644
--- a/opencga-storage/opencga-storage-core/pom.xml
+++ b/opencga-storage/opencga-storage-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-api/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-api/pom.xml
index bc904deccc..3b408a1127 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-api/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-api/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-compat</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.0/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.0/pom.xml
index bf109e1371..ce30f130cf 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.0/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.0/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-compat</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.2/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.2/pom.xml
index f6cb60ee7a..145210cc55 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.2/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.2/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-compat</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.4/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.4/pom.xml
index ebc420d03a..e78bfbe082 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.4/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.4/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-compat</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/pom.xml
index 2a4381a8c6..05bdba5388 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/pom.xml
@@ -23,7 +23,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
index 91cc355092..59a99ca713 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
@@ -23,7 +23,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.1/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.1/pom.xml
index abd28d36f1..71c3d74464 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.1/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.1/pom.xml
@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-lib</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.13/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.13/pom.xml
index d5e8de35cc..1752fa6a3d 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.13/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-emr6.13/pom.xml
@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-lib</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdi5.1/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdi5.1/pom.xml
index 616d8c0d0d..6556d12cbc 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdi5.1/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdi5.1/pom.xml
@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-lib</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdp3.1/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdp3.1/pom.xml
index beac4cdb3c..2d8e814b74 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdp3.1/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/opencga-storage-hadoop-lib-hdp3.1/pom.xml
@@ -7,7 +7,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop-lib</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/pom.xml
index 477bc94cc0..4753a66d85 100644
--- a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-lib/pom.xml
@@ -23,7 +23,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-hadoop/pom.xml b/opencga-storage/opencga-storage-hadoop/pom.xml
index 69c94b8b2f..acb4cd4b09 100644
--- a/opencga-storage/opencga-storage-hadoop/pom.xml
+++ b/opencga-storage/opencga-storage-hadoop/pom.xml
@@ -23,7 +23,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/opencga-storage-server/pom.xml b/opencga-storage/opencga-storage-server/pom.xml
index f69ed9ee43..8d40be5a82 100644
--- a/opencga-storage/opencga-storage-server/pom.xml
+++ b/opencga-storage/opencga-storage-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-storage/pom.xml b/opencga-storage/pom.xml
index 5e77d32e40..7e3cf23f5a 100644
--- a/opencga-storage/pom.xml
+++ b/opencga-storage/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/opencga-test/pom.xml b/opencga-test/pom.xml
index dccd304226..0dcd3f4db4 100644
--- a/opencga-test/pom.xml
+++ b/opencga-test/pom.xml
@@ -24,7 +24,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>3.2.1</version>
+        <version>4.0.0-SNAPSHOT</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
diff --git a/pom.xml b/pom.xml
index cba85a598b..f82fccd957 100644
--- a/pom.xml
+++ b/pom.xml
@@ -22,7 +22,7 @@
 
     <groupId>org.opencb.opencga</groupId>
     <artifactId>opencga</artifactId>
-    <version>3.2.1</version>
+    <version>4.0.0-SNAPSHOT</version>
     <packaging>pom</packaging>
 
     <name>OpenCGA</name>
@@ -43,14 +43,13 @@
     </modules>
 
     <properties>
-        <pyopencga.version>3.2.1</pyopencga.version>
-        <opencgar.version>3.2.1</opencgar.version>
-        <cellbase.version>6.2.1</cellbase.version>
-        <biodata.version>3.2.1</biodata.version>
-        <java-common-libs.version>5.2.1</java-common-libs.version>
-        <iva.version>3.2.1</iva.version>
-
-        <oskar.version>0.2.0</oskar.version>
+	<pyopencga.version>4.0.0_dev</pyopencga.version>
+        <opencgar.version>4.0.0_dev</opencgar.version>
+        <cellbase.version>7.0.0-SNAPSHOT</cellbase.version>
+        <biodata.version>4.0.0-SNAPSHOT</biodata.version>
+        <java-common-libs.version>6.0.0-SNAPSHOT</java-common-libs.version>
+        <iva.version>4.0.0-SNAPSHOT</iva.version>
+	<oskar.version>0.2.0</oskar.version>
 
         <jackson.version>2.14.3</jackson.version>
         <jersey.version>2.30.1</jersey.version>