From ec4f288960d94d37f282802f191ea6977d539150 Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Tue, 14 Nov 2023 15:18:45 +0200 Subject: [PATCH 1/6] pre-commit: Add `shellecheck-py` and `check-jsonschema` --- .pre-commit-config.yaml | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1307e4c..2a026cd 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -34,6 +34,17 @@ repos: - id: "python-check-blanket-type-ignore" - id: "python-use-type-annotations" + - repo: "https://github.com/shellcheck-py/shellcheck-py" + rev: "v0.9.0.6" + hooks: + - id: "shellcheck" + + - repo: "https://github.com/python-jsonschema/check-jsonschema" + rev: "0.27.0" + hooks: + - id: "check-github-workflows" + - id: "check-readthedocs" + - repo: "https://github.com/asottile/reorder_python_imports" rev: "v3.12.0" hooks: From 6b04a5814923e09696c236fd934c89d6316fa0c5 Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Wed, 13 Dec 2023 18:53:19 +0200 Subject: [PATCH 2/6] pydantic: Remove deprecation warnings - require pydantic > 2 --- poetry.lock | 1915 ++++++++++++++--------------- pyproject.toml | 2 +- requirements/requirements-dev.txt | 97 +- requirements/requirements.txt | 38 +- searvey/models.py | 5 +- searvey/multi.py | 5 +- 6 files changed, 1018 insertions(+), 1044 deletions(-) diff --git a/poetry.lock b/poetry.lock index a5c1362..2c236da 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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+babel==2.14.0 ; python_version >= "3.9" and python_version < "3.13" beautifulsoup4==4.12.2 ; python_version >= "3.9" and python_version < "3.13" bleach==6.1.0 ; python_version >= "3.9" and python_version < "3.13" -certifi==2023.7.22 ; python_version >= "3.9" and python_version < "3.13" +certifi==2023.11.17 ; python_version >= "3.9" and python_version < "3.13" cffi==1.16.0 ; python_version >= "3.9" and python_version < "3.13" and implementation_name == "pypy" -charset-normalizer==3.3.1 ; python_version >= "3.9" and python_version < "3.13" +charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "3.13" click-plugins==1.1.1 ; python_version >= "3.9" and python_version < "3.13" click==8.1.7 ; python_version >= "3.9" and python_version < "3.13" cligj==0.7.2 ; python_version >= "3.9" and python_version < "3.13" colorama==0.4.6 ; python_version >= "3.9" and python_version < "3.13" and (platform_system == "Windows" or sys_platform == "win32") -comm==0.1.4 ; python_version >= "3.9" and python_version < "3.13" -contourpy==1.1.1 ; python_version >= "3.9" and python_version < "3.13" +comm==0.2.0 ; python_version >= "3.9" and python_version < "3.13" +contourpy==1.2.0 ; python_version >= "3.9" and python_version < "3.13" covdefaults==2.3.0 ; python_version >= "3.9" and python_version < "3.13" coverage==7.3.2 ; python_version >= "3.9" and python_version < "3.13" coverage[toml]==7.3.2 ; python_version >= "3.9" and python_version < "3.13" @@ -29,81 +29,80 @@ docutils==0.20.1 ; python_version >= "3.9" and python_version < "3.13" dunamai==1.19.0 ; python_version >= "3.9" and python_version < "3.13" entrypoints==0.4 ; python_version >= "3.9" and python_version < "3.13" erddapy==2.2.0 ; python_version >= "3.9" and python_version < "3.13" -exceptiongroup==1.1.3 ; python_version >= "3.9" and python_version < "3.11" +exceptiongroup==1.2.0 ; python_version >= "3.9" and python_version < "3.11" execnet==2.0.2 ; python_version >= "3.9" and python_version < "3.13" executing==2.0.1 ; python_version >= "3.9" and python_version < "3.13" -fastjsonschema==2.18.1 ; python_version >= "3.9" and python_version < "3.13" +fastjsonschema==2.19.0 ; python_version >= "3.9" and python_version < "3.13" fiona==1.9.5 ; python_version >= "3.9" and python_version < "3.13" -fonttools==4.43.1 ; python_version >= "3.9" and python_version < "3.13" +fonttools==4.46.0 ; python_version >= "3.9" and python_version < "3.13" furo==2023.9.10 ; python_version >= "3.9" and python_version < "3.13" -geopandas==0.14.0 ; python_version >= "3.9" and python_version < "3.13" +geopandas==0.14.1 ; python_version >= "3.9" and python_version < "3.13" h11==0.14.0 ; python_version >= "3.9" and python_version < "3.13" html5lib==1.1 ; python_version >= "3.9" and python_version < "3.13" -httpcore==0.18.0 ; python_version >= "3.9" and python_version < "3.13" -httpx==0.25.0 ; python_version >= "3.9" and python_version < "3.13" -idna==3.4 ; python_version >= "3.9" and python_version < "3.13" +httpcore==1.0.2 ; python_version >= "3.9" and python_version < "3.13" +httpx==0.25.2 ; python_version >= "3.9" and python_version < "3.13" +idna==3.6 ; python_version >= "3.9" and python_version < "3.13" imagesize==1.4.1 ; python_version >= "3.9" and python_version < "3.13" -importlib-metadata==6.8.0 ; python_version >= "3.9" and python_version < "3.10" -importlib-resources==6.1.0 ; python_version >= "3.9" and python_version < "3.13" +importlib-metadata==7.0.0 ; python_version >= "3.9" and python_version < "3.10" +importlib-resources==6.1.1 ; python_version >= "3.9" and python_version < "3.13" iniconfig==2.0.0 ; python_version >= "3.9" and python_version < "3.13" -ipykernel==6.26.0 ; python_version >= "3.9" and python_version < "3.13" -ipython==8.17.1 ; python_version >= "3.9" and python_version < "3.13" +ipykernel==6.27.1 ; python_version >= "3.9" and python_version < "3.13" +ipython==8.18.1 ; python_version >= "3.9" and python_version < "3.13" jedi==0.19.1 ; python_version >= "3.9" and python_version < "3.13" jinja2==3.1.2 ; python_version >= "3.9" and python_version < "3.13" -jsonschema-specifications==2023.7.1 ; python_version >= "3.9" and python_version < "3.13" -jsonschema==4.19.2 ; python_version >= "3.9" and python_version < "3.13" -jupyter-client==8.5.0 ; python_version >= "3.9" and python_version < "3.13" +jsonschema-specifications==2023.11.2 ; python_version >= "3.9" and python_version < "3.13" +jsonschema==4.20.0 ; python_version >= "3.9" and python_version < "3.13" +jupyter-client==8.6.0 ; python_version >= "3.9" and python_version < "3.13" jupyter-core==5.5.0 ; python_version >= "3.9" and python_version < "3.13" -jupyterlab-pygments==0.2.2 ; python_version >= "3.9" and python_version < "3.13" +jupyterlab-pygments==0.3.0 ; python_version >= "3.9" and python_version < "3.13" kiwisolver==1.4.5 ; python_version >= "3.9" and python_version < "3.13" -limits==3.6.0 ; python_version >= "3.9" and python_version < "3.13" +limits==3.7.0 ; python_version >= "3.9" and python_version < "3.13" lxml==4.9.3 ; python_version >= "3.9" and python_version < "3.13" m2r2==0.3.3.post2 ; python_version >= "3.9" and python_version < "3.13" markupsafe==2.1.3 ; python_version >= "3.9" and python_version < "3.13" matplotlib-inline==0.1.6 ; python_version >= "3.9" and python_version < "3.13" -matplotlib==3.8.0 ; python_version >= "3.9" and python_version < "3.13" +matplotlib==3.8.2 ; python_version >= "3.9" and python_version < "3.13" mistune==0.8.4 ; python_version >= "3.9" and python_version < "3.13" multidict==6.0.4 ; python_version >= "3.9" and python_version < "3.13" mypy-extensions==1.0.0 ; python_version >= "3.9" and python_version < "3.13" -mypy==1.6.1 ; python_version >= "3.9" and python_version < "3.13" -nbclient==0.8.0 ; python_version >= "3.9" and python_version < "3.13" +mypy==1.7.1 ; python_version >= "3.9" and python_version < "3.13" +nbclient==0.9.0 ; python_version >= "3.9" and python_version < "3.13" nbconvert==6.5.4 ; python_version >= "3.9" and python_version < "3.13" nbformat==5.9.2 ; python_version >= "3.9" and python_version < "3.13" nest-asyncio==1.5.8 ; python_version >= "3.9" and python_version < "3.13" -numpy==1.26.1 ; python_version >= "3.9" and python_version < "3.13" +numpy==1.26.2 ; python_version >= "3.9" and python_version < "3.13" packaging==23.2 ; python_version >= "3.9" and python_version < "3.13" -pandas==2.1.2 ; python_version >= "3.9" and python_version < "3.13" +pandas==2.1.4 ; python_version >= "3.9" and python_version < "3.13" pandocfilters==1.5.0 ; python_version >= "3.9" and python_version < "3.13" parso==0.8.3 ; python_version >= "3.9" and python_version < "3.13" -pexpect==4.8.0 ; python_version >= "3.9" and python_version < "3.13" and sys_platform != "win32" +pexpect==4.9.0 ; python_version >= "3.9" and python_version < "3.13" and sys_platform != "win32" pillow==10.1.0 ; python_version >= "3.9" and python_version < "3.13" -platformdirs==3.11.0 ; python_version >= "3.9" and python_version < "3.13" +platformdirs==4.1.0 ; python_version >= "3.9" and python_version < "3.13" pluggy==1.3.0 ; python_version >= "3.9" and python_version < "3.13" -prompt-toolkit==3.0.39 ; python_version >= "3.9" and python_version < "3.13" +prompt-toolkit==3.0.43 ; python_version >= "3.9" and python_version < "3.13" psutil==5.9.6 ; python_version >= "3.9" and python_version < "3.13" ptyprocess==0.7.0 ; python_version >= "3.9" and python_version < "3.13" and sys_platform != "win32" pure-eval==0.2.2 ; python_version >= "3.9" and python_version < "3.13" pycparser==2.21 ; python_version >= "3.9" and python_version < "3.13" and implementation_name == "pypy" -pydantic-core==2.10.1 ; python_version >= "3.9" and python_version < "3.13" -pydantic==2.4.2 ; python_version >= "3.9" and python_version < "3.13" -pygments==2.16.1 ; python_version >= "3.9" and python_version < "3.13" +pydantic-core==2.14.5 ; python_version >= "3.9" and python_version < "3.13" +pydantic==2.5.2 ; python_version >= "3.9" and python_version < "3.13" +pygments==2.17.2 ; python_version >= "3.9" and python_version < "3.13" pyparsing==3.1.1 ; python_version >= "3.9" and python_version < "3.13" pyproj==3.6.1 ; python_version >= "3.9" and python_version < "3.13" pytest-cov==4.1.0 ; python_version >= "3.9" and python_version < "3.13" -pytest-recording==0.13.0 ; python_version >= "3.9" and python_version < "3.13" -pytest-xdist==3.3.1 ; python_version >= "3.9" and python_version < "3.13" +pytest-recording==0.13.1 ; python_version >= "3.9" and python_version < "3.13" +pytest-xdist==3.5.0 ; python_version >= "3.9" and python_version < "3.13" pytest==7.4.3 ; python_version >= "3.9" and python_version < "3.13" python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "3.13" pytz==2023.3.post1 ; python_version >= "3.9" and python_version < "3.13" pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.9" and python_version < "3.13" pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "3.13" -pyzmq==25.1.1 ; python_version >= "3.9" and python_version < "3.13" -referencing==0.30.2 ; python_version >= "3.9" and python_version < "3.13" +pyzmq==25.1.2 ; python_version >= "3.9" and python_version < "3.13" +referencing==0.32.0 ; python_version >= "3.9" and python_version < "3.13" requests==2.31.0 ; python_version >= "3.9" and python_version < "3.13" -rpds-py==0.10.6 ; python_version >= "3.9" and python_version < "3.13" -scipy==1.11.3 ; python_version >= "3.9" and python_version < "3.13" -setuptools-scm==8.0.4 ; python_version >= "3.9" and python_version < "3.13" -setuptools==68.2.2 ; python_version >= "3.9" and python_version < "3.13" +rpds-py==0.13.2 ; python_version >= "3.9" and python_version < "3.13" +scipy==1.11.4 ; python_version >= "3.9" and python_version < "3.13" +setuptools==69.0.2 ; python_version >= "3.9" and python_version < "3.13" shapely==2.0.2 ; python_version >= "3.9" and python_version < "3.13" six==1.16.0 ; python_version >= "3.9" and python_version < "3.13" sniffio==1.3.0 ; python_version >= "3.9" and python_version < "3.13" @@ -122,18 +121,18 @@ stack-data==0.6.3 ; python_version >= "3.9" and python_version < "3.13" tinycss2==1.2.1 ; python_version >= "3.9" and python_version < "3.13" toml==0.10.2 ; python_version >= "3.9" and python_version < "3.13" tomli==2.0.1 ; python_full_version <= "3.11.0a6" and python_version >= "3.9" -tornado==6.3.3 ; python_version >= "3.9" and python_version < "3.13" +tornado==6.4 ; python_version >= "3.9" and python_version < "3.13" tqdm==4.66.1 ; python_version >= "3.9" and python_version < "3.13" -traitlets==5.13.0 ; python_version >= "3.9" and python_version < "3.13" +traitlets==5.14.0 ; python_version >= "3.9" and python_version < "3.13" types-requests==2.31.0.6 ; python_version >= "3.9" and python_version < "3.13" types-urllib3==1.26.25.14 ; python_version >= "3.9" and python_version < "3.13" -typing-extensions==4.8.0 ; python_version >= "3.9" and python_version < "3.13" +typing-extensions==4.9.0 ; python_version >= "3.9" and python_version < "3.13" tzdata==2023.3 ; python_version >= "3.9" and python_version < "3.13" urllib3==1.26.18 ; python_version >= "3.9" and python_version < "3.13" vcrpy==5.1.0 ; python_version >= "3.9" and python_version < "3.13" -wcwidth==0.2.8 ; python_version >= "3.9" and python_version < "3.13" +wcwidth==0.2.12 ; python_version >= "3.9" and python_version < "3.13" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "3.13" -wrapt==1.15.0 ; python_version >= "3.9" and python_version < "3.13" -xarray==2023.10.1 ; python_version >= "3.9" and python_version < "3.13" -yarl==1.9.2 ; python_version >= "3.9" and python_version < "3.13" +wrapt==1.16.0 ; python_version >= "3.9" and python_version < "3.13" +xarray==2023.12.0 ; python_version >= "3.9" and python_version < "3.13" +yarl==1.9.4 ; python_version >= "3.9" and python_version < "3.13" zipp==3.17.0 ; python_version >= "3.9" and python_version < "3.10" diff --git a/requirements/requirements.txt b/requirements/requirements.txt index 0fa9a84..4abe1be 100644 --- a/requirements/requirements.txt +++ b/requirements/requirements.txt @@ -1,9 +1,9 @@ annotated-types==0.6.0 ; python_version >= "3.9" and python_version < "3.13" -anyio==4.0.0 ; python_version >= "3.9" and python_version < "3.13" +anyio==4.1.0 ; python_version >= "3.9" and python_version < "3.13" attrs==23.1.0 ; python_version >= "3.9" and python_version < "3.13" beautifulsoup4==4.12.2 ; python_version >= "3.9" and python_version < "3.13" -certifi==2023.7.22 ; python_version >= "3.9" and python_version < "3.13" -charset-normalizer==3.3.1 ; python_version >= "3.9" and python_version < "3.13" +certifi==2023.11.17 ; python_version >= "3.9" and python_version < "3.13" +charset-normalizer==3.3.2 ; python_version >= "3.9" and python_version < "3.13" click-plugins==1.1.1 ; python_version >= "3.9" and python_version < "3.13" click==8.1.7 ; python_version >= "3.9" and python_version < "3.13" cligj==0.7.2 ; python_version >= "3.9" and python_version < "3.13" @@ -11,37 +11,37 @@ colorama==0.4.6 ; python_version >= "3.9" and python_version < "3.13" and platfo dataretrieval==1.0.6 ; python_version >= "3.9" and python_version < "3.13" deprecated==1.2.14 ; python_version >= "3.9" and python_version < "3.13" erddapy==2.2.0 ; python_version >= "3.9" and python_version < "3.13" -exceptiongroup==1.1.3 ; python_version >= "3.9" and python_version < "3.11" +exceptiongroup==1.2.0 ; python_version >= "3.9" and python_version < "3.11" fiona==1.9.5 ; python_version >= "3.9" and python_version < "3.13" -geopandas==0.14.0 ; python_version >= "3.9" and python_version < "3.13" +geopandas==0.14.1 ; python_version >= "3.9" and python_version < "3.13" h11==0.14.0 ; python_version >= "3.9" and python_version < "3.13" html5lib==1.1 ; python_version >= "3.9" and python_version < "3.13" -httpcore==0.18.0 ; python_version >= "3.9" and python_version < "3.13" -httpx==0.25.0 ; python_version >= "3.9" and python_version < "3.13" -idna==3.4 ; python_version >= "3.9" and python_version < "3.13" -importlib-metadata==6.8.0 ; python_version >= "3.9" and python_version < "3.10" -importlib-resources==6.1.0 ; python_version >= "3.9" and python_version < "3.13" -limits==3.6.0 ; python_version >= "3.9" and python_version < "3.13" +httpcore==1.0.2 ; python_version >= "3.9" and python_version < "3.13" +httpx==0.25.2 ; python_version >= "3.9" and python_version < "3.13" +idna==3.6 ; python_version >= "3.9" and python_version < "3.13" +importlib-metadata==7.0.0 ; python_version >= "3.9" and python_version < "3.10" +importlib-resources==6.1.1 ; python_version >= "3.9" and python_version < "3.13" +limits==3.7.0 ; python_version >= "3.9" and python_version < "3.13" lxml==4.9.3 ; python_version >= "3.9" and python_version < "3.13" -numpy==1.26.1 ; python_version >= "3.9" and python_version < "3.13" +numpy==1.26.2 ; python_version >= "3.9" and python_version < "3.13" packaging==23.2 ; python_version >= "3.9" and python_version < "3.13" -pandas==2.1.2 ; python_version >= "3.9" and python_version < "3.13" -pydantic-core==2.10.1 ; python_version >= "3.9" and python_version < "3.13" -pydantic==2.4.2 ; python_version >= "3.9" and python_version < "3.13" +pandas==2.1.4 ; python_version >= "3.9" and python_version < "3.13" +pydantic-core==2.14.5 ; python_version >= "3.9" and python_version < "3.13" +pydantic==2.5.2 ; python_version >= "3.9" and python_version < "3.13" pyproj==3.6.1 ; python_version >= "3.9" and python_version < "3.13" python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "3.13" pytz==2023.3.post1 ; python_version >= "3.9" and python_version < "3.13" requests==2.31.0 ; python_version >= "3.9" and python_version < "3.13" -setuptools==68.2.2 ; python_version >= "3.9" and python_version < "3.13" +setuptools==69.0.2 ; python_version >= "3.9" and python_version < "3.13" shapely==2.0.2 ; python_version >= "3.9" and python_version < "3.13" six==1.16.0 ; python_version >= "3.9" and python_version < "3.13" sniffio==1.3.0 ; python_version >= "3.9" and python_version < "3.13" soupsieve==2.5 ; python_version >= "3.9" and python_version < "3.13" tqdm==4.66.1 ; python_version >= "3.9" and python_version < "3.13" -typing-extensions==4.8.0 ; python_version >= "3.9" and python_version < "3.13" +typing-extensions==4.9.0 ; python_version >= "3.9" and python_version < "3.13" tzdata==2023.3 ; python_version >= "3.9" and python_version < "3.13" urllib3==1.26.18 ; python_version >= "3.9" and python_version < "3.13" webencodings==0.5.1 ; python_version >= "3.9" and python_version < "3.13" -wrapt==1.15.0 ; python_version >= "3.9" and python_version < "3.13" -xarray==2023.10.1 ; python_version >= "3.9" and python_version < "3.13" +wrapt==1.16.0 ; python_version >= "3.9" and python_version < "3.13" +xarray==2023.12.0 ; python_version >= "3.9" and python_version < "3.13" zipp==3.17.0 ; python_version >= "3.9" and python_version < "3.10" diff --git a/searvey/models.py b/searvey/models.py index e94ca37..b13099b 100644 --- a/searvey/models.py +++ b/searvey/models.py @@ -14,14 +14,13 @@ class ERDDAPProtocol(str, enum.Enum): class BBox(pydantic.BaseModel): + model_config = pydantic.ConfigDict(extra="forbid") + lon_min: float lon_max: float lat_min: float = pydantic.Field(default=-90, ge=-90, le=90) lat_max: float = pydantic.Field(default=90, ge=-90, le=90) - class Config: - extra = "forbid" - class SymmetricBBox(BBox): lon_min: float = pydantic.Field(default=-180, ge=-180, le=180) diff --git a/searvey/multi.py b/searvey/multi.py index 59a7240..c683c18 100644 --- a/searvey/multi.py +++ b/searvey/multi.py @@ -37,13 +37,12 @@ class FutureResult(pydantic.BaseModel): + model_config = pydantic.ConfigDict(arbitrary_types_allowed=True) + exception: Optional[Exception] = None kwargs: Optional[Dict[str, Any]] = None result: Any = None - class Config: - arbitrary_types_allowed: bool = True - def __hash__(self) -> int: return hash((type(self),) + tuple(self.__dict__.values())) From bf336eb61ef871485afb1313e2828fcdbf5132b1 Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Wed, 13 Dec 2023 18:57:55 +0200 Subject: [PATCH 3/6] ci: Only run on Macos on python 3.9 and 3.12 --- .github/workflows/run_tests.yml | 29 +++++++++++++++++------------ 1 file changed, 17 insertions(+), 12 deletions(-) diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml index cf25f2c..694d303 100644 --- a/.github/workflows/run_tests.yml +++ b/.github/workflows/run_tests.yml @@ -6,18 +6,18 @@ on: - main - master paths: - - '**.py' - - '.github/workflows/*test*.yml' - - 'pyproject.toml' - - 'poetry.lock' - - 'requirements/requirements*.txt' + - "**.py" + - ".github/workflows/*test*.yml" + - "pyproject.toml" + - "poetry.lock" + - "requirements/requirements*.txt" pull_request: paths: - - '**.py' - - '.github/workflows/*test*.yml' - - 'pyproject.toml' - - 'poetry.lock' - - 'requirements/requirements*.txt' + - "**.py" + - ".github/workflows/*test*.yml" + - "pyproject.toml" + - "poetry.lock" + - "requirements/requirements*.txt" jobs: test: @@ -25,8 +25,13 @@ jobs: runs-on: ${{ matrix.os }} strategy: matrix: - os: [ ubuntu-latest, macos-latest ] - python: [ '3.9', '3.10', '3.11', '3.12' ] + os: [ubuntu-latest] + python: ["3.9", "3.10", "3.11", "3.12"] + include: + - os: "macos-latest" + python: "3.9" + - os: "macos-latest" + python: "3.12" steps: - uses: actions/checkout@main - uses: actions/setup-python@main From 7a2316f26632e425650b0494e3f09205475ca95f Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Wed, 13 Dec 2023 19:11:28 +0200 Subject: [PATCH 4/6] makefile: Remove concurrency from `make cov` usgs tests are often failing when being run concurrently. --- Makefile | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/Makefile b/Makefile index 3dcd4db..8379167 100644 --- a/Makefile +++ b/Makefile @@ -21,7 +21,7 @@ test: cov: coverage erase - python -m pytest --cov=searvey --cov-report term-missing -n auto --durations=10 --record-mode=none + python -m pytest --cov=searvey --cov-report term-missing --durations=10 --record-mode=none clean_notebooks: pre-commit run nbstripout -a diff --git a/pyproject.toml b/pyproject.toml index 7593c82..ed54661 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -152,4 +152,4 @@ parallel = true sigterm = true [tool.coverage.report] -fail_under = 89.5 +fail_under = 89 From 338a95595dcc84548bd4a4924bbb0b7aa4688d3c Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Wed, 13 Dec 2023 19:52:12 +0200 Subject: [PATCH 5/6] coops: Remove pandas FutureWarning for concatenating all NaN columns https://github.com/pandas-dev/pandas/blob/a0babcb2c63dd721ea47e75f6229c5fe727b2395/pandas/core/internals/concat.py#L491-L499 --- searvey/coops.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/searvey/coops.py b/searvey/coops.py index 94fd107..c788617 100644 --- a/searvey/coops.py +++ b/searvey/coops.py @@ -775,7 +775,7 @@ def coops_stations(station_status: StationStatus | None = None) -> GeoDataFrame: stations = pandas.concat( ( - active_stations[~active_stations.index.isin(discontinued_stations.index)], + active_stations[~active_stations.index.isin(discontinued_stations.index)].drop(columns="removed"), # fmt: skip discontinued_stations, ) ) From af35323b38ee80d86ba45c97b06555a7e460ce8d Mon Sep 17 00:00:00 2001 From: Panos Mavrogiorgos Date: Wed, 13 Dec 2023 20:03:35 +0200 Subject: [PATCH 6/6] coops: Specify CRS in GeoDataFrame Geopandas was throwing a warning in `searvey.get_stations()`: UserWarning: CRS not set for some of the concatenation inputs. Setting output's CRS as WGS 84 (the single non-null crs provided) The IOC and USGS GeoDataFrames do specify the CRS, so now we do it for COOPS, too. --- searvey/coops.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/searvey/coops.py b/searvey/coops.py index c788617..93f92a8 100644 --- a/searvey/coops.py +++ b/searvey/coops.py @@ -789,7 +789,7 @@ def coops_stations(station_status: StationStatus | None = None) -> GeoDataFrame: return GeoDataFrame( stations[["nws_id", "name", "state", "status", "removed"]], - geometry=geopandas.points_from_xy(stations["x"], stations["y"]), + geometry=geopandas.points_from_xy(stations["x"], stations["y"], crs="EPSG:4326"), )