From 9647b1e5a0389bd2d518f1f1be38301221b05abd Mon Sep 17 00:00:00 2001 From: Caroline Eastwood Date: Tue, 14 Jan 2025 13:41:50 +0000 Subject: [PATCH] Fixes #2896 - Revised textual definition - Added a link to tuft - Added supporting references --- src/mappings/fbbt.sssom.tsv | 24 +- src/mappings/zfa.sssom.tsv | 12 +- src/ontology/cl-edit.owl | 11 +- src/ontology/components/cellxgene_subset.owl | 4 +- src/ontology/imports/go_terms.txt | 3 +- src/ontology/imports/merged_import.owl | 106 +- src/patterns/definitions.owl | 4 +- src/patterns/pattern.owl | 4 +- src/templates/cellxgene_subset.tsv | 1506 +++++++++--------- 9 files changed, 865 insertions(+), 809 deletions(-) diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv index f88df7801..ae3ff68eb 100644 --- a/src/mappings/fbbt.sssom.tsv +++ b/src/mappings/fbbt.sssom.tsv @@ -1,17 +1,17 @@ #curie_map: -# CL: http://purl.obolibrary.org/obo/CL_ -# FBbt: http://purl.obolibrary.org/obo/FBbt_ -# ORCID: https://orcid.org/ -# obo: http://purl.obolibrary.org/obo/ -#mapping_set_id: http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv -#mapping_set_description: Mappings between the Drosophila Anatomy Ontology and foreign ontologies. +# CL: "http://purl.obolibrary.org/obo/CL_" +# FBbt: "http://purl.obolibrary.org/obo/FBbt_" +# ORCID: "https://orcid.org/" +# obo: "http://purl.obolibrary.org/obo/" +#mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv" +#mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies." #creator_id: -# - ORCID:0000-0002-1373-1705 -# - ORCID:0000-0002-6095-8718 -#license: https://creativecommons.org/licenses/by/4.0/ -#subject_source: obo:fbbt.owl -#object_source: obo:cl.owl -#mapping_date: 2024-07-12 +# - "ORCID:0000-0002-1373-1705" +# - "ORCID:0000-0002-6095-8718" +#license: "https://creativecommons.org/licenses/by/4.0/" +#subject_source: "obo:fbbt.owl" +#object_source: "obo:cl.owl" +#mapping_date: "2024-07-12" subject_id subject_label predicate_id object_id object_label mapping_justification FBbt:00000092 primordial germ cell semapv:crossSpeciesExactMatch CL:0000301 pole cell semapv:ManualMappingCuration FBbt:00000124 epithelial cell semapv:crossSpeciesExactMatch CL:0000066 epithelial cell semapv:ManualMappingCuration diff --git a/src/mappings/zfa.sssom.tsv b/src/mappings/zfa.sssom.tsv index b7bbfef1e..55eb8a1cd 100644 --- a/src/mappings/zfa.sssom.tsv +++ b/src/mappings/zfa.sssom.tsv @@ -1,10 +1,10 @@ #curie_map: -# CL: http://purl.obolibrary.org/obo/CL_ -# ZFA: http://purl.obolibrary.org/obo/ZFA_ -#mapping_set_id: http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv -#license: https://creativecommons.org/licenses/by/3.0/ -#subject_source: http://purl.obolibrary.org/obo/zfa.owl -#object_source: http://purl.obolibrary.org/obo/cl.owl +# CL: "http://purl.obolibrary.org/obo/CL_" +# ZFA: "http://purl.obolibrary.org/obo/ZFA_" +#mapping_set_id: "http://purl.obolibrary.org/obo/zfa/zfa.sssom.tsv" +#license: "https://creativecommons.org/licenses/by/3.0/" +#subject_source: "http://purl.obolibrary.org/obo/zfa.owl" +#object_source: "http://purl.obolibrary.org/obo/cl.owl" subject_id subject_label predicate_id object_id object_label mapping_justification ZFA:0000003 adaxial cell semapv:crossSpeciesExactMatch CL:0007016 adaxial cell semapv:UnspecifiedMatching ZFA:0000084 yolk semapv:crossSpeciesExactMatch CL:0000428 yolk cell semapv:UnspecifiedMatching diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index b60fcc0af..e61768fee 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3175,6 +3175,7 @@ Declaration(Class(obo:GO_0070483)) Declaration(Class(obo:GO_0097729)) Declaration(Class(obo:GO_0098535)) Declaration(Class(obo:GO_0098594)) +Declaration(Class(obo:GO_0151001)) Declaration(Class(obo:GO_1990573)) Declaration(Class(obo:NCBITaxon_4896)) Declaration(Class(obo:NCBITaxon_6157)) @@ -15944,16 +15945,18 @@ SubClassOf(obo:CL_0002203 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000127 # Class: obo:CL_0002204 (brush cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:15817800") obo:IAO_0000115 obo:CL_0002204 "A cell type found in the gastrointestinal and respiratory tracts that is characterized by the presence of a tuft of blunt, squat microvilli (120-140 per cell). Function of this cell type is not known.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:0517223651") Annotation(oboInOwl:hasDbXref "PMID:15817800") Annotation(oboInOwl:hasDbXref "PMID:36704202") obo:IAO_0000115 obo:CL_0002204 "An epithelial cell found in various organs, including the gastrointestinal and respiratory tracts, characterized by a tuft of 120-140 blunt microvilli on its apical surface. This cell exhibits diverse functions depending on its location, which includes chemosensation, initiation of immune responses, contribution to mucociliary clearance, and defense against parasites.") AnnotationAssertion(terms:contributor obo:CL_0002204 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002204 "2010-09-02T02:28:53Z"^^xsd:dateTime) AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002204 "FMA:67978") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "caveolated cell") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "fibrillovesicular cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "caveolated cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "fibrillovesicular cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "multivesicular cell") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0002204 "tuft cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "tuft cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36704202") oboInOwl:hasExactSynonym obo:CL_0002204 "peculiar cell") AnnotationAssertion(rdfs:label obo:CL_0002204 "brush cell") SubClassOf(obo:CL_0002204 obo:CL_0002076) +SubClassOf(obo:CL_0002204 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0151001)) # Class: obo:CL_0002205 (brush cell of lobular bronchiole) diff --git a/src/ontology/components/cellxgene_subset.owl b/src/ontology/components/cellxgene_subset.owl index 7c12f6d0f..bb7f55abf 100644 --- a/src/ontology/components/cellxgene_subset.owl +++ b/src/ontology/components/cellxgene_subset.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2025-01-07") + +Annotation(owl:versionInfo "2025-01-14") Declaration(Class()) Declaration(Class()) diff --git a/src/ontology/imports/go_terms.txt b/src/ontology/imports/go_terms.txt index 493dfc91a..bdac0ed7e 100644 --- a/src/ontology/imports/go_terms.txt +++ b/src/ontology/imports/go_terms.txt @@ -18,4 +18,5 @@ GO:0050893 GO:0001552 GO:0019626 GO:0098535 -GO:0046697 \ No newline at end of file +GO:0046697 +GO:0151001 \ No newline at end of file diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index f4adc60c1..8c7985e45 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2025-01-06") + +Annotation(owl:versionInfo "2025-01-14") Declaration(Class()) Declaration(Class()) @@ -45,7 +45,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8559,6 +8558,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8665,6 +8665,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8727,7 +8728,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8914,6 +8915,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -14806,7 +14808,7 @@ AnnotationAssertion(rdfs:label "has_broad_synonym") AnnotationAssertion(rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/18") -# Annotation Property: (has cross-reference) +# Annotation Property: (database_cross_reference) AnnotationAssertion( "An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.") AnnotationAssertion( ) @@ -112589,10 +112591,10 @@ AnnotationAssertion(Annotation( "IEDB:BP") "native protein") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000000001") -AnnotationAssertion(rdfs:comment "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB).") +AnnotationAssertion(rdfs:comment "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB].") AnnotationAssertion(rdfs:label "protein") SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -114201,6 +114203,7 @@ SubClassOf( (prominin) AnnotationAssertion(Annotation( "InterPro:IPR008795") Annotation( "PMID:11467842") "A protein with core architecture consisting of one Prominin (Pfam:PF05478) domain. The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and human prominin and prominin-like 1 are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain.") +AnnotationAssertion( "PANTHER:PTHR22730") AnnotationAssertion( "PIRSF:PIRSF017831") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000001785") @@ -115736,6 +115739,23 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "granzyme K") SubClassOf( ) +# Class: (granzyme H) + +AnnotationAssertion(Annotation( "PRO:CNA") "A leukocyte granule-associated proteinase that is a translation product of the human GZMH gene or a 1:1 ortholog thereof.") +AnnotationAssertion( "CCP-X") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "GZMH") +AnnotationAssertion( "cathepsin G-like 2") +AnnotationAssertion( "cytotoxic T-lymphocyte proteinase") +AnnotationAssertion( "cytotoxic serine protease C") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "CGL2") +AnnotationAssertion( "CSP-C") +AnnotationAssertion(Annotation( ) "CTSGL2") +AnnotationAssertion( "PR:000003490") +AnnotationAssertion(rdfs:comment "Category=gene.") +AnnotationAssertion(rdfs:label "granzyme H") +SubClassOf( ) + # Class: (granzyme B) AnnotationAssertion(Annotation( "PRO:CNA") "A leukocyte granule-associated proteinase that is a translation product of the human GZMB gene or a 1:1 ortholog thereof.") @@ -117261,6 +117281,19 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (granzyme H proteolytic cleavage product) + +AnnotationAssertion(Annotation( "PRO:DNx") "A granzyme H that has been processed by proteolytic cleavage.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "GZMH/ClvPrd") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000018835") +AnnotationAssertion(rdfs:comment "Category=modification.") +AnnotationAssertion(rdfs:label "granzyme H proteolytic cleavage product") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (cholecystokinin proteolytic cleavage product) AnnotationAssertion(Annotation( "PRO:DNx") "A cholecystokinin that has been processed by proteolytic cleavage.") @@ -118020,20 +118053,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein-containing molecular entity) - -AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.") -AnnotationAssertion(Annotation( "PRO:DAN") "protein") -AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") -AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") -AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000064867") -AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050565).") -AnnotationAssertion(rdfs:label "protein-containing molecular entity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +# Class: (protein-containing material entity) + +AnnotationAssertion(Annotation( "PRO:DAN") "A material entity that minimally consists of a protein.") +AnnotationAssertion(Annotation( "PRO:DAN") "protein") +AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") +AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") +AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000050567") +AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566).") +AnnotationAssertion(rdfs:label "protein-containing material entity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (SCO-spondin (human)) @@ -118289,7 +118322,7 @@ SubClassOf( ObjectSomeValuesFrom( (natural killer cells antigen CD94 (mouse)) -AnnotationAssertion(Annotation( "OMA:O54707") Annotation( "PRO:DNx") "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:O54707") Annotation( "PANTHER:PTHR22800:SF15") Annotation( "PRO:DNx") "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O54707") AnnotationAssertion(Annotation( "UniProtKB:O54707") "CD94 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:O54707") "killer cell lectin-like receptor subfamily D member 1 (mouse)") @@ -118390,7 +118423,7 @@ SubClassOf( ObjectSomeValuesFrom( (CD83 antigen (mouse)) -AnnotationAssertion(Annotation( "OMA:O88324") Annotation( "PRO:DNx") "A CD83 molecule that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:O88324") Annotation( "PANTHER:PTHR15193:SF0") Annotation( "PRO:DNx") "A CD83 molecule that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O88324") AnnotationAssertion(Annotation( "UniProtKB:O88324") "CD83 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCD83") @@ -118488,7 +118521,6 @@ SubClassOf( ObjectSomeValuesFrom( (eomesodermin homolog (human)) AnnotationAssertion(Annotation( "PRO:CNA") Annotation( "UniProtKB:O95936") "An eomesodermin that is encoded in the genome of human.") -AnnotationAssertion(Annotation(rdfs:label "PR:O95936 located_in GO:0005654") "Reactome:R-HSA-452232") AnnotationAssertion( "UniProtKB:O95936") AnnotationAssertion(Annotation( "UniProtKB:O95936") "T-box brain protein 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:O95936") "T-brain-2 (human)") @@ -121723,6 +121755,28 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (granzyme H (human)) + +AnnotationAssertion(Annotation( "PRO:CNA") Annotation( "UniProtKB:P20718") "A granzyme H that is encoded in the genome of human.") +AnnotationAssertion( "UniProtKB:P20718") +AnnotationAssertion(Annotation( "UniProtKB:P20718") "CCP-X (human)") +AnnotationAssertion(Annotation( "UniProtKB:P20718") "CSP-C (human)") +AnnotationAssertion(Annotation( "UniProtKB:P20718") "cathepsin G-like 2 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P20718") "cytotoxic T-lymphocyte proteinase (human)") +AnnotationAssertion(Annotation( "UniProtKB:P20718") "cytotoxic serine protease C (human)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hGZMH") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P20718") Annotation( ) "CGL2") +AnnotationAssertion(Annotation( "UniProtKB:P20718") Annotation( ) "CTSGL2") +AnnotationAssertion(Annotation( "UniProtKB:P20718") Annotation( ) "GZMH") +AnnotationAssertion( "PR:P20718") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "granzyme H (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (T-cell surface glycoprotein YE1/48 (mouse)) AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P20937") "A T-cell surface glycoprotein YE1/48 that is encoded in the genome of mouse.") @@ -122408,7 +122462,7 @@ AnnotationAssertion(Annotation( "ADP-ribosyl cyclase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "ADPRC 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "T10 (human)") -AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPR hydrolase 1 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPr hydrolase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "cyclic ADP-ribose hydrolase 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCD38") AnnotationAssertion( "protein") @@ -123867,7 +123921,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P56528") "CD38 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "I-19 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "NIM-R5 antigen (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPR hydrolase 1 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPr hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "cyclic ADP-ribose hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCD38") AnnotationAssertion( "protein") diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index c94c5e8de..eb2759780 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2025-01-06") + +Annotation(owl:versionInfo "2025-01-14") Declaration(Class()) Declaration(Class()) diff --git a/src/patterns/pattern.owl b/src/patterns/pattern.owl index f84d0c449..4f0b92d14 100644 --- a/src/patterns/pattern.owl +++ b/src/patterns/pattern.owl @@ -31,7 +31,6 @@ Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -76,7 +75,6 @@ EquivalentClasses( # Class: (cycling 'cell') AnnotationAssertion(Annotation( "xsd:string"^^xsd:string) "A(n) 'cell' that is cycling."^^xsd:string) -AnnotationAssertion( "xsd:string"^^xsd:string) AnnotationAssertion( "cyclingCellStates"^^xsd:string) AnnotationAssertion(Annotation( "xsd:string"^^xsd:string) "proliferating 'cell'"^^xsd:string) AnnotationAssertion(rdfs:label "cycling 'cell'"^^xsd:string) @@ -90,7 +88,7 @@ AnnotationAssertion(rdfs:label EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -AnnotationAssertion(Annotation( "xsd:string"^^xsd:string) "This extended description was generated by ChatGPT and reviewed by the CellGuide team, who added references, and by the CL editors, who approved it for inclusion in CL. It may contain information that applies to only to some subtypes and species, and so should not be considered definitional. +AnnotationAssertion(Annotation( "xsd:string"^^xsd:string) "This extended description was generated by ChatGPT and reviewed by the CellGuide team, who added references, and by the CL editors, who approved it for inclusion in CL. It may contain information that applies only to some subtypes and species, and so should not be considered definitional. xsd:string"^^xsd:string) AnnotationAssertion( "ExtendedDescription"^^xsd:string) diff --git a/src/templates/cellxgene_subset.tsv b/src/templates/cellxgene_subset.tsv index b5e08b948..7ef149498 100644 --- a/src/templates/cellxgene_subset.tsv +++ b/src/templates/cellxgene_subset.tsv @@ -1,806 +1,806 @@ ID subset ID AI oboInOwl:inSubset -CL:0000864 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000525 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0002262 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000492 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000129 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:4033034 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:2000064 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000776 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000324 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-CL:0002488 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000151 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:2000042 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:4030018 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:1001319 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000545 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:2000084 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000679 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000190 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000682 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000049 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:1000494 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000253 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000499 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:0000067 http://purl.obolibrary.org/obo/cl#cellxgene_subset -CL:4030028 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