From 34feb4a4e6f4d8b7929cc701734b15b8a5e6a6fc Mon Sep 17 00:00:00 2001 From: Thomas Sibley Date: Mon, 12 Feb 2024 11:14:11 -0800 Subject: [PATCH] dev: Use preview version of our centralized pathogen-repo-build.yaml workflow Using mpox here to test changes to how we have GitHub Actions interact with AWS Batch, in advance of merging and releasing those changes to every pathogen repo. "Testing in production, just not all at once." Related-to: --- .github/workflows/ci.yaml | 2 +- .github/workflows/fetch-and-ingest-branch.yaml | 2 +- .github/workflows/fetch-and-ingest.yaml | 2 +- .github/workflows/rebuild-hmpxv1-big.yaml | 2 +- .github/workflows/rebuild-hmpxv1.yaml | 2 +- .github/workflows/rebuild-mpxv.yaml | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index f4b3e601..b4e8756b 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -14,7 +14,7 @@ jobs: runtime: [docker, conda] permissions: id-token: write - uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master + uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@trs/pathogen-repo-build/wait-for-aws-batch-job secrets: inherit with: runtime: ${{ matrix.runtime }} diff --git a/.github/workflows/fetch-and-ingest-branch.yaml b/.github/workflows/fetch-and-ingest-branch.yaml index fe005312..4488bdb1 100644 --- a/.github/workflows/fetch-and-ingest-branch.yaml +++ b/.github/workflows/fetch-and-ingest-branch.yaml @@ -28,7 +28,7 @@ jobs: needs: [set_config_overrides] permissions: id-token: write - uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master + uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@trs/pathogen-repo-build/wait-for-aws-batch-job secrets: inherit with: runtime: aws-batch diff --git a/.github/workflows/fetch-and-ingest.yaml b/.github/workflows/fetch-and-ingest.yaml index d7b4d277..cd86e794 100644 --- a/.github/workflows/fetch-and-ingest.yaml +++ b/.github/workflows/fetch-and-ingest.yaml @@ -35,7 +35,7 @@ jobs: fetch-and-ingest: permissions: id-token: write - uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master + uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@trs/pathogen-repo-build/wait-for-aws-batch-job secrets: inherit with: runtime: aws-batch diff --git a/.github/workflows/rebuild-hmpxv1-big.yaml b/.github/workflows/rebuild-hmpxv1-big.yaml index e8f3f23c..872d42a8 100644 --- a/.github/workflows/rebuild-hmpxv1-big.yaml +++ b/.github/workflows/rebuild-hmpxv1-big.yaml @@ -23,7 +23,7 @@ jobs: rebuild_hmpxv1_big: permissions: id-token: write - uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master + uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@trs/pathogen-repo-build/wait-for-aws-batch-job secrets: inherit with: runtime: aws-batch diff --git a/.github/workflows/rebuild-hmpxv1.yaml b/.github/workflows/rebuild-hmpxv1.yaml index 75c931ef..16987930 100644 --- a/.github/workflows/rebuild-hmpxv1.yaml +++ b/.github/workflows/rebuild-hmpxv1.yaml @@ -23,7 +23,7 @@ jobs: rebuild_hmpxv1: permissions: id-token: write - uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master + uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@trs/pathogen-repo-build/wait-for-aws-batch-job secrets: inherit with: runtime: aws-batch diff --git a/.github/workflows/rebuild-mpxv.yaml b/.github/workflows/rebuild-mpxv.yaml index 4650af3b..03ed0617 100644 --- a/.github/workflows/rebuild-mpxv.yaml +++ b/.github/workflows/rebuild-mpxv.yaml @@ -23,7 +23,7 @@ jobs: rebuild_mpxv: permissions: id-token: write - uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master + uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@trs/pathogen-repo-build/wait-for-aws-batch-job secrets: inherit with: runtime: aws-batch