From 313b3949504e933918d082a732a4121f2d25c97a Mon Sep 17 00:00:00 2001 From: Jennifer Chang Date: Tue, 13 Feb 2024 17:42:47 -0500 Subject: [PATCH] Exclude outliers --- phylogenetic/config/exclude.txt | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/phylogenetic/config/exclude.txt b/phylogenetic/config/exclude.txt index 1940fe11..da98a46b 100644 --- a/phylogenetic/config/exclude.txt +++ b/phylogenetic/config/exclude.txt @@ -48,3 +48,36 @@ MW946564 # SENDAK_HD_10674 # sylvatic OK605757 # DENV2_1_DAK_HD_76395 # sylvatic MW945427 # DENV3/PUERTORICO/1963/PRS_228762_AC27 # too divergent OM258630 # PR_6 # too divergent +OP909734 # DENV2-16681-rcCap-NS1 # too divergent E gene +OM258630 # PR-6 # too divergent E geneOP909734 # DENV2-16681-rcCap-NS1 # too divergent E gene +KR919820 # Brun2014 # highly divergent denv1 +MZ285058 # denv1 # This record was removed from NCBI +OP741244 # D20 # Too divergent in Denv1 tree +OP741243 # 05 # Too divergent in Denv1 tree +ON127553 # BCSIR-IBS-D19 # Too divergent in Denv1 tree +ON127552 # NC_001475.2 # Too divergent in Denv1 tree +ON127551 # BCSIR-IBS-D18 # Too divergent in Denv1 tree +ON127550 # NC_001475.2 # Too divergent in Denv1 tree +ON127538 # BCSIR-IBS-D17 # Too divergent in Denv1 tree +ON127537 # NC_001475.2 # Too divergent in Denv1 tree +ON127534 # strain_1 # Too divergent in Denv1 tree +ON127533 # NC_001475.2 # Too divergent in Denv1 tree +ON127419 # BCSIR-IBS-D14 # Too divergent in Denv1 tree +ON116130 # BCSIR-IBS-D13 # Too divergent in Denv1 tree +ON116129 # NC_001475.2 # Too divergent in Denv1 tree +ON115818 # NC_001475.2 # Too divergent in Denv1 tree +ON115817 # BCSIR-IBS-D11 # Too divergent in Denv1 tree +ON115814 # NC_001475.2 # Too divergent in Denv1 tree +ON115812 # BCSIR-IBS-D9 # Too divergent in Denv1 tree +ON115811 # NC_001475.2 # Too divergent in Denv1 tree +ON115183 # BCSIR-IBS-D8 # Too divergent in Denv1 tree +ON115030 # BCSIR-IBS-D7 # Too divergent in Denv1 tree +ON115026 # BCSIR-IBS-D6 # Too divergent in Denv1 tree +ON115025 # NC_001475.2 # Too divergent in Denv1 tree +ON115024 # BCSIR-IBS-D5 # Too divergent in Denv1 tree +ON115023 # NC_001475.2 # Too divergent in Denv1 tree +ON115022 # BCSIR-IBS-D4 # Too divergent in Denv1 tree +ON115021 # NC_001475.2 # Too divergent in Denv1 tree +ON111445 # NC_001475.2 # Too divergent in Denv1 tree +ON103303 # BCSIR-IBS-D1 # Too divergent in Denv1 tree +OK079104 # BCSIR-05 # Too divergent in Denv1 tree