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profiles.yml
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directories:
profiles: profiles
mappings:
- id: hp
- id: mp
- id: zp
- id: xpo
- id: fbcv
ontologies:
- id: upheno2-lattice
mirror_from: http://purl.obolibrary.org/obo/upheno.owl
- id: upheno1-equivalent
mirror_from: http://purl.obolibrary.org/obo/upheno.owl
- id: upheno1
mirror_from: http://purl.obolibrary.org/obo/upheno.owl
- id: hp
mirror_from: http://purl.obolibrary.org/obo/hp.owl
parent_term: HP:0000118
- id: mp
mirror_from: http://purl.obolibrary.org/obo/mp.owl
parent_term: MP:0000001
- id: zp
mirror_from: http://purl.obolibrary.org/obo/zp.owl
parent_term: ZP:0000000
- id: fbcv
mirror_from: http://purl.obolibrary.org/obo/dpo.owl
parent_term: FBcv:0001347
- id: xpo
mirror_from: http://purl.obolibrary.org/obo/xpo.owl
parent_term: XPO:00000000
semantic_similarity_profiles:
- subset: all
method: semsimian
ontology: upheno2-lattice
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
- subset: hp-mp
method: semsimian
threshold: 0
ontology: upheno2-lattice
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: mp
- subset: hp-hp
method: semsimian
ontology: upheno2-lattice
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: hp
- subset: hp-zp
method: semsimian
ontology: upheno2-lattice
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: zp
- subset: hp-mp
method: semsimian
ontology: upheno2-lattice
threshold: 0.7
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: mp
- subset: hp-hp
method: semsimian
ontology: upheno2-lattice
threshold: 0.7
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: hp
- subset: hp-zp
method: semsimian
ontology: upheno2-lattice
threshold: 0.7
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: zp
- subset: all
method: semsimian
ontology: upheno1
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
- subset: hp-mp
method: semsimian
threshold: 0
ontology: upheno1
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: mp
- subset: hp-hp
method: semsimian
ontology: upheno1
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: hp
- subset: hp-zp
method: semsimian
ontology: upheno1
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: zp
- subset: hp-mp
method: semsimian
ontology: upheno1
threshold: 0.7
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: mp
- subset: hp-hp
method: semsimian
ontology: upheno1
threshold: 0.7
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: hp
- subset: hp-zp
method: semsimian
ontology: upheno1
threshold: 0.7
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: zp
- subset: hp-fbcv
method: semsimian
ontology: upheno1
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: fbcv
- subset: hp-fbcv
method: semsimian
ontology: upheno2-lattice
threshold: 0
branches:
subject: UPHENO:0001001
object: UPHENO:0001001
prefixes:
subject: hp
object: fbcv
- subset: hp-hp
method: semsimian
ontology: phenio-monarch
threshold: 0
prefixes:
subject: hp
object: hp
- subset: hp-fbcv
method: semsimian
ontology: phenio-monarch
threshold: 0
prefixes:
subject: hp
object: fbcv
- subset: hp-hp
method: semsimian
ontology: phenio-monarch
threshold: 0.4
ic: phenio_monarch_hp_ic.tsv
prefixes:
subject: hp
object: hp
- subset: hp-mp
method: semsimian
ontology: phenio-monarch
ic: phenio_monarch_hp_mp_ic.tsv
threshold: 0.4
prefixes:
subject: hp
object: mp
- subset: hp-zp
method: semsimian
ontology: phenio-monarch
ic: phenio_monarch_hp_zp_ic.tsv
threshold: 0.4
prefixes:
subject: hp
object: zp
- subset: hp-xpo
method: semsimian
ontology: phenio-monarch
threshold: 0.4
ic: phenio_monarch_hp_xpo_ic.tsv
prefixes:
subject: hp
object: xpo
- subset: hp-hp
method: semsimian
ontology: phenio-monarch
threshold: 0.4
prefixes:
subject: hp
object: hp
- subset: hp-mp
method: semsimian
ontology: phenio-monarch
threshold: 0.4
prefixes:
subject: hp
object: mp
- subset: hp-zp
method: semsimian
ontology: phenio-monarch
threshold: 0.4
prefixes:
subject: hp
object: zp
- subset: hp-xpo
method: semsimian
ontology: phenio-monarch
threshold: 0.4
prefixes:
subject: hp
object: xpo
# - subset: hp-mp
# method: cosine
# ontology: upheno2-lattice
# branches:
# subject: UPHENO:0001001
# object: UPHENO:0001001
# prefixes:
# subject: hp
# object: mp