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Thanks for finding this! Did you happen to see an error that looks like this?
Traceback (most recent call last):
File "mop-up.py", line 178, in
subprocess.run(
File "/home/zacharymartinez/micromamba/envs/mop-up/lib/python3.8/subprocess.py", line 493, in run
with Popen(*popenargs, **kwargs) as process:
File "/home/zacharymartinez/micromamba/envs/mop-up/lib/python3.8/subprocess.py", line 858, in init
self._execute_child(args, executable, preexec_fn, close_fds,
File "/home/zacharymartinez/micromamba/envs/mop-up/lib/python3.8/subprocess.py", line 1704, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: '/home/zacharymartinez/mop-up_fix/MOP-UP/silix'
The current version can not run.
Add "subprocess.run(["mkdir", outputpath])" in line 171 of "mop-up.py" can solve.
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