diff --git a/.changeset/itchy-numbers-try.md b/.changeset/itchy-numbers-try.md
new file mode 100644
index 000000000..13d3bd79e
--- /dev/null
+++ b/.changeset/itchy-numbers-try.md
@@ -0,0 +1,8 @@
+---
+'@myst-theme/frontmatter': patch
+'myst-demo': patch
+'@myst-theme/article': patch
+'@myst-theme/book': patch
+---
+
+Update for latest myst versions
diff --git a/package-lock.json b/package-lock.json
index ef4a2210b..9dc4999bc 100644
--- a/package-lock.json
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-        "myst-frontmatter": "^1.1.10",
-        "myst-spec": "^0.0.4",
-        "myst-spec-ext": "^1.1.10",
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+      "version": "1.2.0",
+      "resolved": "https://registry.npmjs.org/myst-to-html/-/myst-to-html-1.2.0.tgz",
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@@ -30708,7 +30582,7 @@
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         "mdast-util-to-hast": "^12.3.0",
-        "myst-common": "^1.1.18",
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@@ -30761,21 +30635,21 @@
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-      "resolved": "https://registry.npmjs.org/myst-to-jats/-/myst-to-jats-1.0.19.tgz",
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+      "version": "1.0.24",
+      "resolved": "https://registry.npmjs.org/myst-to-jats/-/myst-to-jats-1.0.24.tgz",
+      "integrity": "sha512-L61PRGs2/98vgjAUYGhd0Gq0tYzi2GmR2dC89/toJXDbGb7Nul7/oaRUTI7tQlYDUWW+f6UaejQVbdgSam4rWQ==",
       "dependencies": {
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+        "citation-js-utils": "^1.1.1",
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         "jats-tags": "^1.0.8",
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-        "myst-spec": "^0.0.4",
-        "myst-spec-ext": "^1.1.17",
-        "myst-transforms": "^1.1.15",
+        "myst-common": "^1.1.27",
+        "myst-frontmatter": "^1.1.27",
+        "myst-spec": "^0.0.5",
+        "myst-spec-ext": "^1.1.27",
+        "myst-transforms": "^1.2.3",
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         "unified": "^10.1.2",
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@@ -30790,36 +30664,36 @@
       "link": true
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-      "resolved": "https://registry.npmjs.org/myst-to-tex/-/myst-to-tex-1.0.14.tgz",
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-        "myst-ext-proof": "^1.0.6",
-        "myst-frontmatter": "^1.1.15",
-        "myst-spec-ext": "^1.1.15",
+      "version": "1.0.23",
+      "resolved": "https://registry.npmjs.org/myst-to-tex/-/myst-to-tex-1.0.23.tgz",
+      "integrity": "sha512-4eacbgp9BRSKoeJAk7mzhw55RPPXVDS1unJ+vu9zwiJcQeVTIS7f0GV6Nj0jpBnjaJYA24cd4Ds+GFx4AgU/lw==",
+      "dependencies": {
+        "myst-common": "^1.1.31",
+        "myst-ext-proof": "^1.0.8",
+        "myst-frontmatter": "^1.1.31",
+        "myst-spec-ext": "^1.1.31",
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-      "resolved": "https://registry.npmjs.org/myst-to-typst/-/myst-to-typst-0.0.6.tgz",
-      "integrity": "sha512-u2QXEi0IcSTav2vwABmc5KlGQhav5piPzmXx7wa3MjtdLyXM7w7hHEZhwLTuChKiX9gLAj4W8Bko+fP/VqwQ4g==",
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-        "myst-frontmatter": "^1.1.10",
-        "myst-spec-ext": "^1.1.10",
-        "tex-to-typst": "^0.0.3",
+      "version": "0.0.12",
+      "resolved": "https://registry.npmjs.org/myst-to-typst/-/myst-to-typst-0.0.12.tgz",
+      "integrity": "sha512-o4xWZ0M4PmRjKPKEAAGhmgJ5tYrgbnuIZu0234wtDQpEvtK+Qt/xngMd3bEJhhG2HuC4qadcGLkzzm+fWh08Lg==",
+      "dependencies": {
+        "myst-common": "^1.1.31",
+        "myst-frontmatter": "^1.1.31",
+        "myst-spec-ext": "^1.1.31",
+        "tex-to-typst": "^0.0.5",
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     "node_modules/myst-transforms": {
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-      "resolved": "https://registry.npmjs.org/myst-transforms/-/myst-transforms-1.1.16.tgz",
-      "integrity": "sha512-9B5+Ji4JtThMmyWxLcVlSY8MCd+Rg1wxUU4cG56RfCT6FVWiQfgfokKopoMAi3VTK79MOlMa0pz2hRl/URjXSg==",
+      "version": "1.3.1",
+      "resolved": "https://registry.npmjs.org/myst-transforms/-/myst-transforms-1.3.1.tgz",
+      "integrity": "sha512-9mcJVKMZ/oHt0nU2x+Yq1WIZ/bIef0WS7n73gJiRWp6iPV957KBuQnqZOmnB2MXQNwSo4io6MxfvPpAA6eZ3yA==",
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@@ -30828,10 +30702,11 @@
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-        "myst-common": "^1.1.18",
-        "myst-spec": "^0.0.4",
-        "myst-spec-ext": "^1.1.18",
-        "myst-to-html": "1.0.18",
+        "myst-common": "^1.1.31",
+        "myst-frontmatter": "^1.1.31",
+        "myst-spec": "^0.0.5",
+        "myst-spec-ext": "^1.1.31",
+        "myst-to-html": "1.2.0",
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         "rehype-remark": "^9.1.2",
         "unified": "^10.0.0",
@@ -32843,7 +32718,6 @@
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-      "dev": true,
       "bin": {
         "prettier": "bin/prettier.cjs"
       },
@@ -36609,9 +36483,9 @@
       }
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     "node_modules/tex-to-typst": {
-      "version": "0.0.3",
-      "resolved": "https://registry.npmjs.org/tex-to-typst/-/tex-to-typst-0.0.3.tgz",
-      "integrity": "sha512-aNR+mi4i/n/O7GiTtElFaklvj4nKyoSlN+gEB55atgQYMnUAI1cjZHXJ0L/r5u/yB3RZdmg9oYx3hrhH+TjdTA==",
+      "version": "0.0.5",
+      "resolved": "https://registry.npmjs.org/tex-to-typst/-/tex-to-typst-0.0.5.tgz",
+      "integrity": "sha512-5mrs0iGsvbTFy2ow7ZfJiGVl+sr3CQdwkxP5MjgaA7YT2DYsJOm99kzEDXU+01tk9pVPkYYPwaLoVXPY85xOLw==",
       "dependencies": {
         "@unified-latex/unified-latex": "^1.4.0",
         "@unified-latex/unified-latex-util-arguments": "^1.4.0",
@@ -39050,26 +38924,6 @@
         "node": ">=8"
       }
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-    "node_modules/wikibase-sdk": {
-      "version": "8.1.1",
-      "resolved": "https://registry.npmjs.org/wikibase-sdk/-/wikibase-sdk-8.1.1.tgz",
-      "integrity": "sha512-1NjMnfNQ4OaLh0dFAeTMvV3vGAq6HXsNKGfYUJYOVyBPGBDMunlY3QZ8+72hLV5FiKmc6Bzg1xbI0jCHfHmIew==",
-      "engines": {
-        "node": ">= 10.0.0"
-      }
-    },
-    "node_modules/wikidata-sdk": {
-      "version": "8.1.1",
-      "resolved": "https://registry.npmjs.org/wikidata-sdk/-/wikidata-sdk-8.1.1.tgz",
-      "integrity": "sha512-KOUhJtpCHg32k/tz7pFj/BaqiYAvYGz4sGzcT15t120832WtfNTGCSeohmln40/JOjpxzfzud/6q2x6Q0Ji5hg==",
-      "deprecated": "wikidata-sdk has been renamed wikibase-sdk",
-      "dependencies": {
-        "wikibase-sdk": "^8.1.1"
-      },
-      "engines": {
-        "node": ">= 6.4"
-      }
-    },
     "node_modules/word-wrap": {
       "version": "1.2.5",
       "resolved": "https://registry.npmjs.org/word-wrap/-/word-wrap-1.2.5.tgz",
@@ -39564,9 +39418,9 @@
       "version": "0.7.0",
       "license": "MIT",
       "dependencies": {
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
-        "myst-spec-ext": "^1.1.18",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
+        "myst-spec-ext": "^1.1.31",
         "nbtx": "^0.2.3",
         "unist-util-select": "^4.0.3"
       }
@@ -39646,11 +39500,11 @@
         "buffer": "^6.0.3",
         "classnames": "^2.3.2",
         "jupyterlab-plotly": "^5.18.0",
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
-        "myst-frontmatter": "^1.1.18",
-        "myst-spec": "^0.0.4",
-        "myst-spec-ext": "^1.1.18",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
+        "myst-frontmatter": "^1.1.31",
+        "myst-spec": "^0.0.5",
+        "myst-spec-ext": "^1.1.31",
         "myst-to-react": "^0.7.0",
         "nanoid": "^4.0.2",
         "nbtx": "^0.2.3",
@@ -39701,25 +39555,26 @@
         "@heroicons/react": "^2.0.18",
         "classnames": "^2.3.2",
         "js-yaml": "^4.1.0",
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
-        "myst-directives": "^1.0.18",
-        "myst-ext-card": "^1.0.4",
-        "myst-ext-exercise": "^1.0.4",
-        "myst-ext-grid": "^1.0.4",
-        "myst-ext-proof": "^1.0.6",
-        "myst-ext-tabs": "^1.0.4",
-        "myst-frontmatter": "^1.1.18",
-        "myst-parser": "^1.0.18",
-        "myst-spec": "^0.0.4",
-        "myst-to-docx": "^1.0.7",
-        "myst-to-html": "^1.0.18",
-        "myst-to-jats": "^1.0.19",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
+        "myst-directives": "^1.2.0",
+        "myst-ext-card": "^1.0.5",
+        "myst-ext-exercise": "^1.0.5",
+        "myst-ext-grid": "^1.0.5",
+        "myst-ext-proof": "^1.0.8",
+        "myst-ext-tabs": "^1.0.5",
+        "myst-frontmatter": "^1.1.31",
+        "myst-parser": "^1.2.0",
+        "myst-spec": "^0.0.5",
+        "myst-to-docx": "^1.0.9",
+        "myst-to-html": "^1.2.0",
+        "myst-to-jats": "^1.0.24",
         "myst-to-react": "^0.7.0",
-        "myst-to-tex": "^1.0.14",
-        "myst-to-typst": "^0.0.6",
-        "myst-transforms": "^1.1.16",
+        "myst-to-tex": "^1.0.23",
+        "myst-to-typst": "^0.0.12",
+        "myst-transforms": "^1.3.1",
         "unified": "^10.1.2",
+        "unist-util-remove": "^4.0.0",
         "unist-util-visit": "^4.1.2",
         "vfile": "^5.3.7",
         "vfile-message": "^3.1.4"
@@ -39737,6 +39592,11 @@
         "react-dom": "^16.8 || ^17.0 || ^18.0"
       }
     },
+    "packages/myst-demo/node_modules/@types/unist": {
+      "version": "3.0.2",
+      "resolved": "https://registry.npmjs.org/@types/unist/-/unist-3.0.2.tgz",
+      "integrity": "sha512-dqId9J8K/vGi5Zr7oo212BGii5m3q5Hxlkwy3WpYuKPklmBEvsbMYYyLxAQpSffdLl/gdW0XUpKWFvYmyoWCoQ=="
+    },
     "packages/myst-demo/node_modules/argparse": {
       "version": "2.0.1",
       "resolved": "https://registry.npmjs.org/argparse/-/argparse-2.0.1.tgz",
@@ -39753,6 +39613,45 @@
         "js-yaml": "bin/js-yaml.js"
       }
     },
+    "packages/myst-demo/node_modules/unist-util-is": {
+      "version": "6.0.0",
+      "resolved": "https://registry.npmjs.org/unist-util-is/-/unist-util-is-6.0.0.tgz",
+      "integrity": "sha512-2qCTHimwdxLfz+YzdGfkqNlH0tLi9xjTnHddPmJwtIG9MGsdbutfTc4P+haPD7l7Cjxf/WZj+we5qfVPvvxfYw==",
+      "dependencies": {
+        "@types/unist": "^3.0.0"
+      },
+      "funding": {
+        "type": "opencollective",
+        "url": "https://opencollective.com/unified"
+      }
+    },
+    "packages/myst-demo/node_modules/unist-util-remove": {
+      "version": "4.0.0",
+      "resolved": "https://registry.npmjs.org/unist-util-remove/-/unist-util-remove-4.0.0.tgz",
+      "integrity": "sha512-b4gokeGId57UVRX/eVKej5gXqGlc9+trkORhFJpu9raqZkZhU0zm8Doi05+HaiBsMEIJowL+2WtQ5ItjsngPXg==",
+      "dependencies": {
+        "@types/unist": "^3.0.0",
+        "unist-util-is": "^6.0.0",
+        "unist-util-visit-parents": "^6.0.0"
+      },
+      "funding": {
+        "type": "opencollective",
+        "url": "https://opencollective.com/unified"
+      }
+    },
+    "packages/myst-demo/node_modules/unist-util-visit-parents": {
+      "version": "6.0.1",
+      "resolved": "https://registry.npmjs.org/unist-util-visit-parents/-/unist-util-visit-parents-6.0.1.tgz",
+      "integrity": "sha512-L/PqWzfTP9lzzEa6CKs0k2nARxTdZduw3zyh8d2NVBnsyvHjSX4TWse388YrrQKbvI8w20fGjGlhgT96WwKykw==",
+      "dependencies": {
+        "@types/unist": "^3.0.0",
+        "unist-util-is": "^6.0.0"
+      },
+      "funding": {
+        "type": "opencollective",
+        "url": "https://opencollective.com/unified"
+      }
+    },
     "packages/myst-to-react": {
       "version": "0.7.0",
       "license": "MIT",
@@ -39762,9 +39661,9 @@
         "@radix-ui/react-hover-card": "^1.0.6",
         "buffer": "^6.0.3",
         "classnames": "^2.3.2",
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
-        "myst-spec": "^0.0.4",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
+        "myst-spec": "^0.0.5",
         "nanoid": "^4.0.2",
         "react-syntax-highlighter": "^15.5.0",
         "swr": "^2.1.5",
@@ -39821,9 +39720,9 @@
       "peerDependencies": {
         "@types/react": "^16.8 || ^17.0 || ^18.0",
         "@types/react-dom": "^16.8 || ^17.0 || ^18.0",
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
-        "myst-frontmatter": "^1.1.18",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
+        "myst-frontmatter": "^1.1.31",
         "react": "^16.8 || ^17.0 || ^18.0",
         "react-dom": "^16.8 || ^17.0 || ^18.0"
       }
@@ -39843,10 +39742,10 @@
         "@radix-ui/react-collapsible": "^1.0.3",
         "classnames": "^2.3.2",
         "lodash.throttle": "^4.1.1",
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
         "myst-demo": "^0.7.0",
-        "myst-spec-ext": "^1.1.18",
+        "myst-spec-ext": "^1.1.31",
         "myst-to-react": "^0.7.0",
         "nbtx": "^0.2.3",
         "node-cache": "^5.1.2",
@@ -39894,8 +39793,8 @@
         "@remix-run/node": "~1.17.0",
         "@remix-run/react": "~1.17.0",
         "@remix-run/vercel": "~1.17.0",
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
         "node-fetch": "^2.6.11",
         "react": "^18.2.0",
         "react-dom": "^18.2.0"
@@ -39927,8 +39826,8 @@
         "@remix-run/node": "~1.17.0",
         "@remix-run/react": "~1.17.0",
         "@remix-run/vercel": "~1.17.0",
-        "myst-common": "^1.1.18",
-        "myst-config": "^1.1.18",
+        "myst-common": "^1.1.31",
+        "myst-config": "^1.1.31",
         "node-fetch": "^2.6.11",
         "react": "^18.2.0",
         "react-dom": "^18.2.0"
diff --git a/packages/common/package.json b/packages/common/package.json
index 83c7716e8..1005caf5f 100644
--- a/packages/common/package.json
+++ b/packages/common/package.json
@@ -19,9 +19,9 @@
     "build": "npm-run-all -l clean -p build:esm"
   },
   "dependencies": {
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
-    "myst-spec-ext": "^1.1.18",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
+    "myst-spec-ext": "^1.1.31",
     "nbtx": "^0.2.3",
     "unist-util-select": "^4.0.3"
   }
diff --git a/packages/jupyter/package.json b/packages/jupyter/package.json
index 3eb865099..e963d593f 100644
--- a/packages/jupyter/package.json
+++ b/packages/jupyter/package.json
@@ -30,11 +30,11 @@
     "buffer": "^6.0.3",
     "classnames": "^2.3.2",
     "jupyterlab-plotly": "^5.18.0",
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
-    "myst-frontmatter": "^1.1.18",
-    "myst-spec": "^0.0.4",
-    "myst-spec-ext": "^1.1.18",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
+    "myst-frontmatter": "^1.1.31",
+    "myst-spec": "^0.0.5",
+    "myst-spec-ext": "^1.1.31",
     "myst-to-react": "^0.7.0",
     "nanoid": "^4.0.2",
     "nbtx": "^0.2.3",
diff --git a/packages/myst-demo/package.json b/packages/myst-demo/package.json
index 2e0950b68..4e2bd0e8c 100644
--- a/packages/myst-demo/package.json
+++ b/packages/myst-demo/package.json
@@ -23,25 +23,26 @@
     "@heroicons/react": "^2.0.18",
     "classnames": "^2.3.2",
     "js-yaml": "^4.1.0",
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
-    "myst-directives": "^1.0.18",
-    "myst-ext-card": "^1.0.4",
-    "myst-ext-exercise": "^1.0.4",
-    "myst-ext-grid": "^1.0.4",
-    "myst-ext-proof": "^1.0.6",
-    "myst-ext-tabs": "^1.0.4",
-    "myst-frontmatter": "^1.1.18",
-    "myst-parser": "^1.0.18",
-    "myst-spec": "^0.0.4",
-    "myst-to-docx": "^1.0.7",
-    "myst-to-html": "^1.0.18",
-    "myst-to-jats": "^1.0.19",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
+    "myst-directives": "^1.2.0",
+    "myst-ext-card": "^1.0.5",
+    "myst-ext-exercise": "^1.0.5",
+    "myst-ext-grid": "^1.0.5",
+    "myst-ext-proof": "^1.0.8",
+    "myst-ext-tabs": "^1.0.5",
+    "myst-frontmatter": "^1.1.31",
+    "myst-parser": "^1.2.0",
+    "myst-spec": "^0.0.5",
+    "myst-to-docx": "^1.0.9",
+    "myst-to-html": "^1.2.0",
+    "myst-to-jats": "^1.0.24",
     "myst-to-react": "^0.7.0",
-    "myst-to-tex": "^1.0.14",
-    "myst-to-typst": "^0.0.6",
-    "myst-transforms": "^1.1.16",
+    "myst-to-tex": "^1.0.23",
+    "myst-to-typst": "^0.0.12",
+    "myst-transforms": "^1.3.1",
     "unified": "^10.1.2",
+    "unist-util-remove": "^4.0.0",
     "unist-util-visit": "^4.1.2",
     "vfile": "^5.3.7",
     "vfile-message": "^3.1.4"
diff --git a/packages/myst-demo/src/index.tsx b/packages/myst-demo/src/index.tsx
index d9899831a..c7a4d7e04 100644
--- a/packages/myst-demo/src/index.tsx
+++ b/packages/myst-demo/src/index.tsx
@@ -1,9 +1,17 @@
 import { VFile } from 'vfile';
 import type { LatexResult } from 'myst-to-tex'; // Only import the type!!
 import type { TypstResult } from 'myst-to-typst'; // Only import the type!!
+import { remove } from 'unist-util-remove';
 import type { VFileMessage } from 'vfile-message';
 import yaml from 'js-yaml';
-import type { GenericNode, References } from 'myst-common';
+import {
+  fileError,
+  RuleId,
+  type GenericNode,
+  type GenericParent,
+  type References,
+} from 'myst-common';
+import type { Code } from 'myst-spec';
 import { SourceFileKind } from 'myst-spec-ext';
 import type { DocxResult } from 'myst-to-docx';
 import { validatePageFrontmatter } from 'myst-frontmatter';
@@ -11,7 +19,7 @@ import type { PageFrontmatter } from 'myst-frontmatter';
 import type { NodeRenderer } from '@myst-theme/providers';
 import { ReferencesProvider } from '@myst-theme/providers';
 import { CopyIcon, CodeBlock, MyST } from 'myst-to-react';
-import React, { useEffect, useRef, useState } from 'react';
+import { useEffect, useRef, useState } from 'react';
 import classnames from 'classnames';
 import {
   ExclamationTriangleIcon,
@@ -40,6 +48,36 @@ async function saveDocxFile(filename: string, mdast: any) {
   downloadBlob(filename, docxBlob as Blob);
 }
 
+/**
+ * Simpler function than getFrontmatter from myst-transforms
+ *
+ * This only strips frontmatter yaml; it does nothing with headings
+ */
+function getFrontmatter(vfile: VFile, tree: GenericParent) {
+  const firstParent = tree.children[0]?.type === 'block' ? tree.children[0] : tree;
+  const firstNode = firstParent.children?.[0] as Code;
+  let frontmatter: Record<string, any> = {};
+  const firstIsYaml = firstNode?.type === 'code' && firstNode?.lang === 'yaml';
+  if (firstIsYaml) {
+    try {
+      frontmatter = (yaml.load(firstNode.value) as Record<string, any>) || {};
+      (firstNode as any).type = '__delete__';
+    } catch (err) {
+      fileError(vfile, 'Invalid YAML frontmatter', {
+        note: (err as Error).message,
+        ruleId: RuleId.frontmatterIsYaml,
+      });
+    }
+  }
+  // Handles deleting the block if it is the only element in the block
+  const possibleNull = remove(tree, '__delete__');
+  if (possibleNull === null) {
+    // null is returned if tree itself didn’t pass the test or is cascaded away
+    remove(tree, { cascade: false }, '__delete__');
+  }
+  return frontmatter;
+}
+
 async function parse(
   text: string,
   defaultFrontmatter?: PageFrontmatter,
@@ -66,7 +104,6 @@ async function parse(
     RRIDTransformer,
     linksPlugin,
     ReferenceState,
-    getFrontmatter,
     abbreviationPlugin,
     glossaryPlugin,
     joinGatesPlugin,
@@ -80,7 +117,7 @@ async function parse(
   const { tabDirectives } = await import('myst-ext-tabs');
   const { proofDirective } = await import('myst-ext-proof');
   const { exerciseDirectives } = await import('myst-ext-exercise');
-  const file = new VFile();
+  const vfile = new VFile();
   const parseMyst = (content: string) =>
     mystParse(content, {
       markdownit: { linkify: true },
@@ -92,7 +129,7 @@ async function parse(
         ...exerciseDirectives,
       ],
       // roles: [reactiveRole],
-      vfile: file,
+      vfile,
     });
   const mdast = parseMyst(text);
   const linkTransforms = [
@@ -110,17 +147,14 @@ async function parse(
     cite: { order: [], data: {} },
     footnotes: {},
   };
-  const { frontmatter: frontmatterRaw } = getFrontmatter(file, mdast, {
-    removeYaml: true,
-    removeHeading: options?.removeHeading ?? false,
-  });
+  const frontmatterRaw = getFrontmatter(vfile, mdast);
   const frontmatter = validatePageFrontmatter(frontmatterRaw, {
     property: 'frontmatter',
     messages: {},
   });
-  const state = new ReferenceState({
+  const state = new ReferenceState('', {
     numbering: frontmatter.numbering ?? defaultFrontmatter?.numbering,
-    file,
+    vfile,
   });
   visit(mdast, (n) => {
     // Before we put in the citation render, we can mark them as errors
@@ -131,7 +165,7 @@ async function parse(
   unified()
     .use(basicTransformationsPlugin, { parser: parseMyst })
     .use(mathPlugin, { macros: frontmatter?.math ?? {} }) // This must happen before enumeration, as it can add labels
-    .use(glossaryPlugin, { state }) // This should be before the enumerate plugins
+    .use(glossaryPlugin) // This should be before the enumerate plugins
     .use(abbreviationPlugin, { abbreviations: frontmatter.abbreviations })
     .use(enumerateTargetsPlugin, { state })
     .use(linksPlugin, { transformers: linkTransforms })
@@ -139,7 +173,7 @@ async function parse(
     .use(joinGatesPlugin)
     .use(resolveReferencesPlugin, { state })
     .use(keysPlugin)
-    .runSync(mdast as any, file);
+    .runSync(mdast as any, vfile);
 
   const mdastPost = JSON.parse(JSON.stringify(mdast));
   visit(mdastPost, (n) => {
@@ -186,7 +220,7 @@ async function parse(
     typstWarnings: typstFile.messages,
     jats: jats,
     jatsWarnings: jatsFile.messages,
-    warnings: file.messages,
+    warnings: vfile.messages,
   };
 }
 
diff --git a/packages/myst-to-react/package.json b/packages/myst-to-react/package.json
index 45a4d9506..7dd21629a 100644
--- a/packages/myst-to-react/package.json
+++ b/packages/myst-to-react/package.json
@@ -25,9 +25,9 @@
     "@radix-ui/react-hover-card": "^1.0.6",
     "buffer": "^6.0.3",
     "classnames": "^2.3.2",
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
-    "myst-spec": "^0.0.4",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
+    "myst-spec": "^0.0.5",
     "nanoid": "^4.0.2",
     "react-syntax-highlighter": "^15.5.0",
     "swr": "^2.1.5",
diff --git a/packages/providers/package.json b/packages/providers/package.json
index f82438f32..d2f163f3d 100644
--- a/packages/providers/package.json
+++ b/packages/providers/package.json
@@ -25,9 +25,9 @@
   "peerDependencies": {
     "@types/react": "^16.8 || ^17.0 || ^18.0",
     "@types/react-dom": "^16.8 || ^17.0 || ^18.0",
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
-    "myst-frontmatter": "^1.1.18",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
+    "myst-frontmatter": "^1.1.31",
     "react": "^16.8 || ^17.0 || ^18.0",
     "react-dom": "^16.8 || ^17.0 || ^18.0"
   },
diff --git a/packages/site/package.json b/packages/site/package.json
index c9fe85b68..30dc2b02c 100644
--- a/packages/site/package.json
+++ b/packages/site/package.json
@@ -25,10 +25,10 @@
     "@radix-ui/react-collapsible": "^1.0.3",
     "classnames": "^2.3.2",
     "lodash.throttle": "^4.1.1",
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
     "myst-demo": "^0.7.0",
-    "myst-spec-ext": "^1.1.18",
+    "myst-spec-ext": "^1.1.31",
     "myst-to-react": "^0.7.0",
     "nbtx": "^0.2.3",
     "node-cache": "^5.1.2",
diff --git a/themes/article/package.json b/themes/article/package.json
index 9b468c838..4af01cfe4 100644
--- a/themes/article/package.json
+++ b/themes/article/package.json
@@ -25,8 +25,8 @@
     "@remix-run/node": "~1.17.0",
     "@remix-run/react": "~1.17.0",
     "@remix-run/vercel": "~1.17.0",
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
     "node-fetch": "^2.6.11",
     "react": "^18.2.0",
     "react-dom": "^18.2.0"
diff --git a/themes/book/package.json b/themes/book/package.json
index 0e14e8835..d317ee8d0 100644
--- a/themes/book/package.json
+++ b/themes/book/package.json
@@ -25,8 +25,8 @@
     "@remix-run/node": "~1.17.0",
     "@remix-run/react": "~1.17.0",
     "@remix-run/vercel": "~1.17.0",
-    "myst-common": "^1.1.18",
-    "myst-config": "^1.1.18",
+    "myst-common": "^1.1.31",
+    "myst-config": "^1.1.31",
     "node-fetch": "^2.6.11",
     "react": "^18.2.0",
     "react-dom": "^18.2.0"