Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Move mutations on a single recombinant match above parents #443

Closed
jeromekelleher opened this issue Dec 13, 2024 · 2 comments
Closed

Move mutations on a single recombinant match above parents #443

jeromekelleher opened this issue Dec 13, 2024 · 2 comments

Comments

@jeromekelleher
Copy link
Owner

Currently mutations get pushed below the recombination node, which is probably less parsimonious that putting them on the branches back to the parents.

@jeromekelleher
Copy link
Owner Author

This is probably not a good idea in the short term as mutations that occur on these partial edges won't be available for the reversion push and overlap hueristics. It is definitely something to remember though.

@jeromekelleher
Copy link
Owner Author

See #86 e.g.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant