From fa10e29c1eda72aeadc5db5189c0f4d9aae38bbc Mon Sep 17 00:00:00 2001 From: Filipe Fernandes Date: Fri, 13 Dec 2024 11:42:01 +0100 Subject: [PATCH] fix redirects --- .../2024-09-13-OBIS_EOVs.ipynb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/jupyterbook/content/code_gallery/data_analysis_and_visualization_notebooks/2024-09-13-OBIS_EOVs.ipynb b/jupyterbook/content/code_gallery/data_analysis_and_visualization_notebooks/2024-09-13-OBIS_EOVs.ipynb index ba58a1d2..e871d673 100644 --- a/jupyterbook/content/code_gallery/data_analysis_and_visualization_notebooks/2024-09-13-OBIS_EOVs.ipynb +++ b/jupyterbook/content/code_gallery/data_analysis_and_visualization_notebooks/2024-09-13-OBIS_EOVs.ipynb @@ -13,7 +13,7 @@ "\n", "The Global Ocean Observing System (GOOS) is a global network of ocean observing systems led by the Intergovernmental Oceanographic Commission of UNESCO. NOAA's U.S. Integrated Ocean Observing System (IOOS) is a part of this global network. GOOS has developed Essential Ocean Variables (EOVs) to help harmonize data that is collected across various ocean observing systems around the globe. The [GOOS Biology and Ecosystems Variables](https://goosocean.org/what-we-do/framework/essential-ocean-variables/) are focused on the abundance and distribution of specific groups of aquatic organisms that are important for ecosystems. \n", "\n", - "Through the work of the [Biology - Integrating Core to Essential Variables (Bio-ICE) task team](https://doi.org/10.5281/zenodo.7335669), a [process](https://github.com/MathewBiddle/bio_ice/blob/main/create_map_from_OBIS_API.ipynb) was established to programmatically query the [Ocean Biodiversity Information System](https://www.obis.org/) API for shallow water hard corals (taxonomic order [Scleractinia](https://www.marinespecies.org/aphia.php?p=taxdetails&id=1363)) to generate a map of the density of occurrences.\n", + "Through the work of the [Biology - Integrating Core to Essential Variables (Bio-ICE) task team](https://zenodo.org/records/7335670), a [process](https://github.com/MathewBiddle/bio_ice/blob/main/create_map_from_OBIS_API.ipynb) was established to programmatically query the [Ocean Biodiversity Information System](https://www.obis.org/) API for shallow water hard corals (taxonomic order [Scleractinia](https://www.marinespecies.org/aphia.php?p=taxdetails&id=1363)) to generate a map of the density of occurrences.\n", "\n", "To build on that process, the [IOOS Marine Life Data Network](https://ioos.github.io/marine_life_data_network/) has developed an example [list of biological taxa](https://github.com/ioos/marine_life_data_network/tree/main/eov_taxonomy) that align with GOOS EOVs. The lists contain their identifiers (in this case, aphiaIDs) that can be used to query published biological occurrence data in the OBIS. The lists established for this notebook are not comprehensive and serve as an example for how one could organize AphiaIDs to programmatically query OBIS for appropriate data.\n", "\n", @@ -196,7 +196,7 @@ "\n", "References:\n", "\n", - "Erica K. Towle, Abigail Benson, Mathew Biddle, Sarah R. D. Bingo, Kaitlyn Brucker, Gabrielle Canonico, Maggie Chory, Kruti Desai, Masha Edmondson, Miguel Figuerola, Christina L. Horstmann, Susan Jackson, Jennifer Koss, Kathryn E. Lohr, J. Landrum, Laura Lorenzoni, Anderson B. Mayfield, Brian D. Melzian, Frank E. Muller-Karger, … Kimberly K. Yates. (2022). Biology: Integrating Core To Essential Variables (Bio-ICE) Task Team Report for Hard Corals. https://doi.org/10.5281/zenodo.7335670" + "Erica K. Towle, Abigail Benson, Mathew Biddle, Sarah R. D. Bingo, Kaitlyn Brucker, Gabrielle Canonico, Maggie Chory, Kruti Desai, Masha Edmondson, Miguel Figuerola, Christina L. Horstmann, Susan Jackson, Jennifer Koss, Kathryn E. Lohr, J. Landrum, Laura Lorenzoni, Anderson B. Mayfield, Brian D. Melzian, Frank E. Muller-Karger, … Kimberly K. Yates. (2022). Biology: Integrating Core To Essential Variables (Bio-ICE) Task Team Report for Hard Corals. https://zenodo.org/records/7335670" ] } ],