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REMEMBER HEADER FOR MVP #7

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giuliapontali opened this issue Aug 2, 2024 · 0 comments
Open

REMEMBER HEADER FOR MVP #7

giuliapontali opened this issue Aug 2, 2024 · 0 comments

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@giuliapontali
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MVP want a file with the following header:
GENE_NAMEDATASET TISSUE SNPID RSID CHR POS_38 POS_37 BETA SE MinusLog10PVAL EFFECT_ALLELE OTHER_ALLELE MAF EAF SAMPLESIZE GENE_ENSEMBL TSS_37 TSS_38 SeqID UNIPROT PROTEIN_NAME PROTEIN_LONG_NAME PVE FILENAME Gene.type.

DATASET= INTERVAL_CHRIS_META_COJO_UNCONDITIONAL
TISSUE=WholeBlood
FILENAME = NA
Gene.type == "protein_coding"

res$PVE = ( 2*(res$BETA^2)res$MAF(1-res$MAF) ) / ( 2*(res$BETA^2)res$MAF(1-res$MAF)+(res$SE^2)2res$SAMPLESIZEres$MAF(1-res$MAF) )
@giuliapontali giuliapontali changed the title REMEMBER!!!! REMEMBER HEADER FOR MVP Aug 13, 2024
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@giuliapontali