diff --git a/make-deployable.sh b/make-deployable.sh index a1161ae..36d2a38 100755 --- a/make-deployable.sh +++ b/make-deployable.sh @@ -2,7 +2,7 @@ wf_name="cellranger-vdj" version="6.0.2" -files="submit.sh CellRangerVdj.deps.zip CellRangerVdj.wdl CellRangerVdj.options.aws.json" +files="submit.sh CellRangerVdj.deps.zip CellRangerVdj.wdl CellRangerVdj.options.aws.json configs/template.*.json" dest="$HOME/scing/bin" usage() @@ -36,7 +36,7 @@ mkdir -p ${dest} # create a temporary directory and copy files path_workdir=`mktemp -d` mkdir -p ${path_workdir}/${wf_name}-${version} -cp ${files} ${path_workdir}/${wf_name}-${version}/ +rsync -Rv ${files} ${path_workdir}/${wf_name}-${version}/ # tar-gzip cd ${path_workdir}