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Cannot using ROS in a docker container #6

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JinraeKim opened this issue Mar 6, 2021 · 5 comments
Open

Cannot using ROS in a docker container #6

JinraeKim opened this issue Mar 6, 2021 · 5 comments

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@JinraeKim
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JinraeKim commented Mar 6, 2021 •
edited
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Thank you very much to make and maintain a package for ROS. I also read your future plan about ROS2 in #5 and an issue in Cxx.jl.
I'm looking forward to use the Julia wrapper of ROS2 :)

Before the release of new package for ROS2 compatible with upcoming Cxx.jl for Julia 1.6+, I tried to test ROS.jl with docker.
Unfortunately, using ROS does not work with Julia 1.3.1 in a docker container. It would be very desirable if ROS.jl is compatible with docker.

The docker image is based on docker-ubuntu-vnc-desktop with Ubuntu 18.04 (bionic) and ros distro melodic (I followed the official installation).

I can share my image but my docker repo is now private for some reason. If you need it for reproduction, please leave a comment.

Summary

  • Julia 1.3.1
  • ROS.jl 0.2.3
  • Type using ROS after adding it gave me the following error.
  • I don't think it's a matter of docker because some other packages seem to be fine. For example, using Random works well.

error message

ubuntu@2b7a0c418c3b:~$ julia-1.3
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.3.1 (2019-12-30)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

julia> using ROS
[ Info: Precompiling ROS [a492bfac-16cc-4d50-a8b6-f03352b6b563]
error: unknown target CPU 'generic'

signal (11): Segmentation fault
in expression starting at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/Cxx.jl:178
_ZN5clang16CompilerInstance18createPreprocessorENS_19TranslationUnitKindE at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/../deps/usr/lib/libcxxffi.so (unknown line)
finish_clang_init at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/../deps/usr/lib/libcxxffi.so (unknown line)
init_clang_instance at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/../deps/usr/lib/libcxxffi.so (unknown line)
#setup_instance#20 at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/initialization.jl:38
#setup_instance at ./tuple.jl:0 [inlined]
__init__ at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/initialization.jl:430
unknown function (ip: 0x7f128701d55b)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2141 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1631 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:328
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:417
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:368 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:778
jl_interpret_toplevel_thunk_callback at /buildworker/worker/package_linux64/build/src/interpreter.c:888
unknown function (ip: 0xfffffffffffffffe)
unknown function (ip: 0x7f12a115b48f)
unknown function (ip: 0xffffffffffffffff)
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:897
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:814
jl_eval_module_expr at /buildworker/worker/package_linux64/build/src/toplevel.c:181
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:640
jl_eval_module_expr at /buildworker/worker/package_linux64/build/src/toplevel.c:181
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:640
jl_parse_eval_all at /buildworker/worker/package_linux64/build/src/ast.c:873
jl_load at /buildworker/worker/package_linux64/build/src/toplevel.c:878
include at ./boot.jl:328 [inlined]
include_relative at ./loading.jl:1105
include at ./Base.jl:31
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1631 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:328
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:417
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:368 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:778
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:705
jl_interpret_toplevel_thunk_callback at /buildworker/worker/package_linux64/build/src/interpreter.c:888
unknown function (ip: 0xfffffffffffffffe)
unknown function (ip: 0x7f12a0954d0f)
unknown function (ip: 0x2)
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:897
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:814
jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:843
eval at ./boot.jl:330 [inlined]
eval at ./client.jl:425
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
top-level scope at ./none:3
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:808
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:764
jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:843
eval at ./boot.jl:330
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
exec_options at ./client.jl:263
_start at ./client.jl:460
jfptr__start_2084 at /home/ubuntu/julia-1.3.1/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
jl_apply at /buildworker/worker/package_linux64/build/ui/../src/julia.h:1631 [inlined]
true_main at /buildworker/worker/package_linux64/build/ui/repl.c:96
main at /buildworker/worker/package_linux64/build/ui/repl.c:217
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/ubuntu/julia-1.3.1/bin/julia (unknown line)
Allocations: 1644461 (Pool: 1644031; Big: 430); GC: 2
ERROR: LoadError: Failed to precompile Cxx [a0b5b9ef-44b7-5148-a2d1-f6db19f3c3d2] to /home/ubuntu/.julia/compiled/v1.3/Cxx/ESGkI_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
 [6] include at ./boot.jl:328 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1105
 [8] include(::Module, ::String) at ./Base.jl:31
 [9] top-level scope at none:2
 [10] eval at ./boot.jl:330 [inlined]
 [11] eval(::Expr) at ./client.jl:425
 [12] top-level scope at ./none:3
in expression starting at /home/ubuntu/.julia/packages/ROS/VTErh/src/ROS.jl:3
ERROR: Failed to precompile ROS [a492bfac-16cc-4d50-a8b6-f03352b6b563] to /home/ubuntu/.julia/compiled/v1.3/ROS/EjtV2_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917
@JinraeKim JinraeKim changed the title Cannot using ROS in docker container Cannot using ROS in a docker container Mar 6, 2021
@gstavrinos
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Hey, thanks for the interest in the package, and the detailed error report.

Can you please check that you can use Cxx.jl with any other package that depends on it?

@JinraeKim
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@gstavrinos Sorry for being late (I usually don't turn on the noti from github).
Actually I'm kind of a newbie of Cxx.jl so I have no idea which package depends on it.
If you know, please recommend it to me. Meanwhile, I'll search some packages.

@JinraeKim
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JinraeKim commented Mar 10, 2021 •
edited
Loading

I've found that this is an issue of Cxx.jl cuz I cannot using Cxx.

I've raised an issue on Cxx.jl.

ubuntu@2b7a0c418c3b:~$ julia-1.3
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.3.1 (2019-12-30)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(v1.3) pkg> add Cxx
  Updating registry at `~/.julia/registries/General`
  Updating git-repo `https://github.com/JuliaRegistries/General.git`
 Resolving package versions...
  Updating `~/.julia/environments/v1.3/Project.toml`
  [a0b5b9ef] + Cxx v0.4.0
  Updating `~/.julia/environments/v1.3/Manifest.toml`
 [no changes]

julia> using Cxx
[ Info: Precompiling Cxx [a0b5b9ef-44b7-5148-a2d1-f6db19f3c3d2]
error: unknown target CPU 'generic'

signal (11): Segmentation fault
in expression starting at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/Cxx.jl:178
_ZN5clang16CompilerInstance18createPreprocessorENS_19TranslationUnitKindE at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/../deps/usr/lib/libcxxffi.so (unknown line)
finish_clang_init at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/../deps/usr/lib/libcxxffi.so (unknown line)
init_clang_instance at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/../deps/usr/lib/libcxxffi.so (unknown line)
#setup_instance#20 at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/initialization.jl:38
#setup_instance at ./tuple.jl:0 [inlined]
__init__ at /home/ubuntu/.julia/packages/Cxx/1RaOv/src/initialization.jl:430
unknown function (ip: 0x7f515066531b)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2141 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1631 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:328
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:417
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:368 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:778
jl_interpret_toplevel_thunk_callback at /buildworker/worker/package_linux64/build/src/interpreter.c:888
unknown function (ip: 0xfffffffffffffffe)
unknown function (ip: 0x7f516aa9200f)
unknown function (ip: 0xffffffffffffffff)
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:897
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:814
jl_eval_module_expr at /buildworker/worker/package_linux64/build/src/toplevel.c:181
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:640
jl_eval_module_expr at /buildworker/worker/package_linux64/build/src/toplevel.c:181
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:640
jl_parse_eval_all at /buildworker/worker/package_linux64/build/src/ast.c:873
jl_load at /buildworker/worker/package_linux64/build/src/toplevel.c:878
include at ./boot.jl:328 [inlined]
include_relative at ./loading.jl:1105
include at ./Base.jl:31
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1631 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:328
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:417
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:368 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:778
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:705
jl_interpret_toplevel_thunk_callback at /buildworker/worker/package_linux64/build/src/interpreter.c:888
unknown function (ip: 0xfffffffffffffffe)
unknown function (ip: 0x7f5169f84a0f)
unknown function (ip: 0x2)
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:897
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:814
jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:843
eval at ./boot.jl:330 [inlined]
eval at ./client.jl:425
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
top-level scope at ./none:3
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:808
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:764
jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:843
eval at ./boot.jl:330
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
exec_options at ./client.jl:263
_start at ./client.jl:460
jfptr__start_2084 at /home/ubuntu/julia-1.3.1/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2135 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2305
jl_apply at /buildworker/worker/package_linux64/build/ui/../src/julia.h:1631 [inlined]
true_main at /buildworker/worker/package_linux64/build/ui/repl.c:96
main at /buildworker/worker/package_linux64/build/ui/repl.c:217
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
_start at /home/ubuntu/julia-1.3.1/bin/julia (unknown line)
Allocations: 1644540 (Pool: 1644111; Big: 429); GC: 2
ERROR: Failed to precompile Cxx [a0b5b9ef-44b7-5148-a2d1-f6db19f3c3d2] to /home/ubuntu/.julia/compiled/v1.3/Cxx/ESGkI_lOBhQ.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1283
 [3] _require(::Base.PkgId) at ./loading.jl:1024
 [4] require(::Base.PkgId) at ./loading.jl:922
 [5] require(::Module, ::Symbol) at ./loading.jl:917

@JinraeKim JinraeKim mentioned this issue Mar 10, 2021
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@gstavrinos
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Owner

In my docker/travis test machine of this repo, I use this command to solve some of the Cxx issues:

sudo cp /usr/lib/x86_64-linux-gnu/libstdc++.so.6 ~/julia/lib/julia/libstdc++.so.6

Check if this is working for you.

@JinraeKim
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Thanks.
Unfortunately, I'm too busy now to test it.
I'll try it later :)

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@gstavrinos @JinraeKim