Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Map from compound names to compound IDs #63

Open
joewandy opened this issue Jun 11, 2020 · 1 comment
Open

Map from compound names to compound IDs #63

joewandy opened this issue Jun 11, 2020 · 1 comment
Assignees

Comments

@joewandy
Copy link
Member

Many data, including to covid one, use the names of the compounds as the ID. It's very tedious trying to map each compound name to KEGG/ChEBI ID manually. We need an automatic way to do this.

  1. To begin with, I think we can just do a script or notebook to map from names -> ID.

  2. Later on we should add this functionality to the data upload page. For example, MetaboAnalyst displays a page showing its attempt in mapping names and IDs. User can delete an entry from this page if it isn't correct.

image

@RonanDaly
Copy link
Member

This would be very useful!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants