Scaling scripts that read in bam files and make GeneBodyCoverage plots

[staracode]

Monkey jobs with lots of samples do not scale well at certain steps.
Here is a script that doesn't scale well because it needs to read in all the bams of all the files before creating a gene body coverage plot. Maybe we should have an option to disable this plot.
/data/work/Code/alexgw/monkey_agw/bin/46.qc.multiple.bam.pl

Job run on rigel:
qstat -f 75702

Project LK-862

[alexgraehl]

Note that that plot runs "in the background" anyway so it doesn't delay anything else, except for the compute time.

…

On Wed, Sep 13, 2017 at 11:14 AM, Tara Friedrich ***@***.***> wrote: Monkey jobs with lots of samples do not scale well at certain steps. Here is a script that doesn't scale well because it needs to read in all the bams of all the files before creating a gene body coverage plot. Maybe we should have an option to disable this plot. /data/work/Code/alexgw/monkey_agw/bin/46.qc.multiple.bam.pl Job run on rigel: qstat -f 75702 Project LK-862 — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#3>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AA15HRhV_KEAjksB9e2IGLkqhQyyLsVgks5siBuUgaJpZM4PWhDY> .

[staracode]

Yes, I noticed this! Thanks for commenting.