diff --git a/monkey_agw b/monkey_agw index b6ececb..a1d5c5f 100755 --- a/monkey_agw +++ b/monkey_agw @@ -14,7 +14,7 @@ use Data::Dumper; use Getopt::Long; use Cwd 'abs_path'; use lib dirname( abs_path $0); -my $MONKEY_BASEDIR; BEGIN { $MONKEY_BASEDIR = "/wynton/group/gladstone/biocore/monkey"; } #$MONKEY_BASEDIR = (defined($ENV{'MONKEY_BASEDIR'})) ? $ENV{'MONKEY_BASEDIR'} : "/data/work/Code/alexgw/monkey_agw"; +my $MONKEY_BASEDIR; BEGIN { $MONKEY_BASEDIR = "/wynton/group/gladstone/biocore/MonkeyPipeline"; } #$MONKEY_BASEDIR = (defined($ENV{'MONKEY_BASEDIR'})) ? $ENV{'MONKEY_BASEDIR'} : "/data/work/Code/alexgw/monkey_agw"; use lib qw(/wynton/group/gladstone/third_party/perl5/libperl/lib/perl5); use lib "$MONKEY_BASEDIR"; # To make sure we find bananas_agw use bananas_agw; # Looks for it in $MONKEY_BASEDIR