diff --git a/cloud/assembly.yml b/cloud/assembly.yml
index dbc24e55..580817da 100644
--- a/cloud/assembly.yml
+++ b/cloud/assembly.yml
@@ -10,3 +10,5 @@ tools:
   owner: bgruening
 - name: gfastats
   owner: bgruening
+- name: quast
+  owner: iuc
diff --git a/cloud/assembly.yml.lock b/cloud/assembly.yml.lock
index 20a131ad..072c4090 100644
--- a/cloud/assembly.yml.lock
+++ b/cloud/assembly.yml.lock
@@ -14,6 +14,7 @@ tools:
   owner: nml
   revisions:
   - b8c00ce5dfa0
+  - d5887ace0dd4
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: miniasm
@@ -34,5 +35,12 @@ tools:
   owner: bgruening
   revisions:
   - 3ef480892a9f
+  - f4a3eff8ab85
+  tool_panel_section_id: assembly
+  tool_panel_section_label: Assembly
+- name: quast
+  owner: iuc
+  revisions:
+  - 72472698a2df
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
diff --git a/cloud/fasta_fastq.yml.lock b/cloud/fasta_fastq.yml.lock
index dcef0652..d5dec8fd 100644
--- a/cloud/fasta_fastq.yml.lock
+++ b/cloud/fasta_fastq.yml.lock
@@ -17,6 +17,7 @@ tools:
 - name: fastq_filter
   owner: devteam
   revisions:
+  - '144275714590'
   - 81a9090d6df3
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
@@ -24,23 +25,27 @@ tools:
   owner: devteam
   revisions:
   - 47e5dbc3e790
+  - e9f8633db0a2
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: fastq_manipulation
   owner: devteam
   revisions:
   - 5b87038565bb
+  - e30352e889fe
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: fasta_compute_length
   owner: devteam
   revisions:
+  - 5cbde03c1103
   - 7d37cfda8e00
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: fastq_paired_end_deinterlacer
   owner: devteam
   revisions:
+  - 523c2aff0376
   - f3936d0632cb
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
@@ -48,6 +53,7 @@ tools:
   owner: devteam
   revisions:
   - 2ccb8dcabddc
+  - b41c2c1bcfbf
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: flash
@@ -67,6 +73,7 @@ tools:
 - name: umi_tools_count
   owner: iuc
   revisions:
+  - 71ad4a56c40c
   - 8250ea3a1501
   - a535cf1e5da4
   - b557acca0b56
@@ -76,6 +83,7 @@ tools:
   owner: iuc
   revisions:
   - 6a675c3aa610
+  - 7a7e33d28f62
   - 99aea37a7ff7
   - f3759eec3018
   tool_panel_section_id: fasta_fastq
@@ -84,6 +92,7 @@ tools:
   owner: peterjc
   revisions:
   - 141612f8c3e3
+  - 85ef5f5a0562
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: length_and_gc_content
diff --git a/cloud/fastq_quality_control.yml.lock b/cloud/fastq_quality_control.yml.lock
index 08e326da..980b278a 100644
--- a/cloud/fastq_quality_control.yml.lock
+++ b/cloud/fastq_quality_control.yml.lock
@@ -21,6 +21,7 @@ tools:
   - 65b93b623c77
   - d60c3f704da0
   - dbf9c561ef29
+  - dbfc505896e9
   tool_panel_section_id: fastq_quality_control
   tool_panel_section_label: FASTQ Quality Control
 - name: fastqc
@@ -35,6 +36,7 @@ tools:
 - name: trimmomatic
   owner: pjbriggs
   revisions:
+  - b9aaed85cbd1
   - d94aff5ee623
   tool_panel_section_id: fastq_quality_control
   tool_panel_section_label: FASTQ Quality Control
diff --git a/cloud/graph_display_data.yml.lock b/cloud/graph_display_data.yml.lock
index 0e251bf5..62bc7a0c 100644
--- a/cloud/graph_display_data.yml.lock
+++ b/cloud/graph_display_data.yml.lock
@@ -13,8 +13,8 @@ tools:
 - name: circos
   owner: iuc
   revisions:
-  - df7356989ac1
   - c4bde687c846
+  - df7356989ac1
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: jbrowse
@@ -27,9 +27,9 @@ tools:
 - name: volcanoplot
   owner: iuc
   revisions:
-  - 83c573f2e73c
-  - 73b8cb5bddcd
   - 2f557f6abbfb
+  - 73b8cb5bddcd
+  - 83c573f2e73c
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: pathview
@@ -42,9 +42,10 @@ tools:
 - name: ggplot2_heatmap2
   owner: iuc
   revisions:
-  - 53460afd5115
-  - 566197475670
-  - 4955e9bb96d1
   - 374e9062d874
+  - 4955e9bb96d1
+  - 51c6ccaace7e
+  - 53460afd5115
+  - '566197475670'
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
diff --git a/cloud/nanopore.yml.lock b/cloud/nanopore.yml.lock
index 2ca1df31..487e6d5a 100644
--- a/cloud/nanopore.yml.lock
+++ b/cloud/nanopore.yml.lock
@@ -13,6 +13,7 @@ tools:
 - name: flye
   owner: bgruening
   revisions:
+  - 1f0769f0b56b
   - 3e4f8642c77e
   - 3ee0ef312022
   tool_panel_section_id: nanopore
@@ -49,12 +50,14 @@ tools:
   owner: iuc
   revisions:
   - 28d7819c312f
+  - daf8518d243a
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_hist
   owner: iuc
   revisions:
   - 5a82eb9e1b89
+  - d1805f9c4c82
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_occupancy
@@ -67,17 +70,20 @@ tools:
   owner: iuc
   revisions:
   - 4fe6b96aff72
+  - 626b6c2be5c2
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_squiggle
   owner: iuc
   revisions:
+  - 26e6c9362b7b
   - 34553d0caa5e
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_yield_plot
   owner: iuc
   revisions:
+  - c5c5a3e84989
   - ca22d8497db5
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
@@ -91,12 +97,14 @@ tools:
 - name: poretools_winner
   owner: iuc
   revisions:
+  - 6d93709247c7
   - 79c1ac92f31b
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_times
   owner: iuc
   revisions:
+  - '107124859931'
   - 960be5e0b47e
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
@@ -104,29 +112,34 @@ tools:
   owner: iuc
   revisions:
   - 2cb2feb94f0e
+  - 5f5f1da94d7f
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_stats
   owner: iuc
   revisions:
   - 4b17acf9b6ab
+  - c1cbe2575d32
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_qualdist
   owner: iuc
   revisions:
+  - 72dfdbfab3cc
   - ae9060e764b5
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_nucdist
   owner: iuc
   revisions:
+  - 5c4fa65f5733
   - a57b6350fd5d
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: poretools_extract
   owner: iuc
   revisions:
+  - 08064da7b7fb
   - 7e4f1ed70187
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
diff --git a/cloud/qiime2.yml.lock b/cloud/qiime2.yml.lock
index c8c3ecb2..9a894931 100644
--- a/cloud/qiime2.yml.lock
+++ b/cloud/qiime2.yml.lock
@@ -6,6 +6,7 @@ tools:
 - name: suite_qiime2_core
   owner: q2d2
   revisions:
+  - 1dfccc639d50
   - 3f011fac899d
   tool_panel_section_id: qiime2
   tool_panel_section_label: QIIME2
diff --git a/cloud/rna_seq.yml b/cloud/rna_seq.yml
index 0035acc7..9ec03ada 100644
--- a/cloud/rna_seq.yml
+++ b/cloud/rna_seq.yml
@@ -32,3 +32,7 @@ tools:
   owner: iuc
 - name: brew3r_r
   owner: iuc
+- name: seurat
+  owner: iuc
+- name: dexseq
+  owner: iuc
diff --git a/cloud/rna_seq.yml.lock b/cloud/rna_seq.yml.lock
index 385b576b..fc7ff8fb 100644
--- a/cloud/rna_seq.yml.lock
+++ b/cloud/rna_seq.yml.lock
@@ -74,6 +74,7 @@ tools:
   owner: iuc
   revisions:
   - 1759d845181e
+  - 1b851f87fbe0
   - 38b6d12edc68
   - f3a5f075498f
   - f9d49f5cb597
@@ -82,6 +83,7 @@ tools:
 - name: cufflinks
   owner: devteam
   revisions:
+  - 6926716bbfb5
   - d080005cffe1
   tool_panel_section_id: rna_seq
   tool_panel_section_label: RNA-seq
@@ -114,5 +116,18 @@ tools:
   owner: iuc
   revisions:
   - 05f8e9d1e8b8
+  - d3b0390f325f
+  tool_panel_section_id: rna_seq
+  tool_panel_section_label: RNA-seq
+- name: seurat
+  owner: iuc
+  revisions:
+  - fab6ff46e019
+  tool_panel_section_id: rna_seq
+  tool_panel_section_label: RNA-seq
+- name: dexseq
+  owner: iuc
+  revisions:
+  - 9a7c5b6d8f1e
   tool_panel_section_id: rna_seq
   tool_panel_section_label: RNA-seq
diff --git a/cloud/rseqc.yml.lock b/cloud/rseqc.yml.lock
index 927bce22..fde01daf 100644
--- a/cloud/rseqc.yml.lock
+++ b/cloud/rseqc.yml.lock
@@ -7,6 +7,7 @@ tools:
   owner: nilesh
   revisions:
   - 1a052c827e88
+  - 27e16a30667a
   - dbedfc5f5a3c
   tool_panel_section_id: rseqc
   tool_panel_section_label: RSeQC
diff --git a/cloud/single_cell.yml.lock b/cloud/single_cell.yml.lock
index a53e2df6..60b5be85 100644
--- a/cloud/single_cell.yml.lock
+++ b/cloud/single_cell.yml.lock
@@ -7,12 +7,14 @@ tools:
   owner: bgruening
   revisions:
   - 4447ed460308
+  - d817b3807562
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: music_manipulate_eset
   owner: bgruening
   revisions:
   - 22232092be53
+  - b5185a4f5209
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: music_inspect_eset
@@ -20,12 +22,14 @@ tools:
   revisions:
   - 2fed32b5aa02
   - 7705cc75ac18
+  - fde4c972e7c5
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: music_deconvolution
   owner: bgruening
   revisions:
   - 2ba99a52bd44
+  - 8cd2ecfa2e61
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: music_construct_eset
@@ -33,6 +37,7 @@ tools:
   revisions:
   - 282819d09a4f
   - 2cfd0db49bbc
+  - 48f0fb3061b1
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: 10x_bamtofastq
@@ -46,6 +51,7 @@ tools:
   revisions:
   - 55e35e9203cf
   - 93dd15e13e6a
+  - d330b3082107
   - fb9e030ffae4
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
@@ -54,6 +60,7 @@ tools:
   revisions:
   - 0cb889db0910
   - 707023fa62fe
+  - cfaf5a405371
   - e1c3c2f2a834
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
@@ -61,6 +68,7 @@ tools:
   owner: iuc
   revisions:
   - 3d748954434b
+  - 7e8c677a7b71
   - 9bd945a03d7b
   - ed4996a16f7f
   tool_panel_section_id: single_cell
@@ -75,6 +83,7 @@ tools:
 - name: anndata_inspect
   owner: iuc
   revisions:
+  - 0bf7fddf90c7
   - 286a24ac079c
   - 688357ad5e61
   - 6f0d0c784f09
@@ -85,6 +94,7 @@ tools:
   owner: iuc
   revisions:
   - 05631436cdf1
+  - 0f1aaff9b22d
   - e98619de2776
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
@@ -118,6 +128,7 @@ tools:
   revisions:
   - 2b0d3e2f402a
   - 41f34e925bd5
+  - c7ddb719554d
   - f3eb2291da05
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
@@ -125,6 +136,7 @@ tools:
   owner: iuc
   revisions:
   - 43c146e25a43
+  - 8b917923f7d4
   - b83fbc90161e
   - c891d8b33ede
   tool_panel_section_id: single_cell
@@ -133,6 +145,7 @@ tools:
   owner: iuc
   revisions:
   - 0bff0ee0683a
+  - 49776718ae90
   - a4b734cd253b
   - f911a64454fb
   tool_panel_section_id: single_cell
@@ -141,6 +154,7 @@ tools:
   owner: iuc
   revisions:
   - 2af7c5086a96
+  - 2bfd55b87af3
   - 72979cac22b2
   - c92d0f9338c5
   tool_panel_section_id: single_cell
@@ -148,6 +162,7 @@ tools:
 - name: raceid_inspecttrajectory
   owner: iuc
   revisions:
+  - 6e90c8adf84f
   - a6821f856a1e
   - c8434a623268
   - df8e4e54d367
@@ -157,6 +172,7 @@ tools:
   owner: bgruening
   revisions:
   - 04b494623f8e
+  - b0fe3e482cb7
   - c9944a2600f1
   - e4c01dcece8b
   tool_panel_section_id: single_cell
@@ -172,6 +188,7 @@ tools:
   owner: imgteam
   revisions:
   - 8856a7c85e4c
+  - a72590196440
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: scater_create_qcmetric_ready_sce
@@ -223,6 +240,7 @@ tools:
 - name: scanpy_cluster_reduce_dimension
   owner: iuc
   revisions:
+  - 8983e7a04ba7
   - aaa5da8e73a9
   - f9353ee6a0d4
   tool_panel_section_id: single_cell
@@ -230,6 +248,7 @@ tools:
 - name: scanpy_filter
   owner: iuc
   revisions:
+  - 64388be6d510
   - 72a6bebab2a5
   - b409c2486353
   tool_panel_section_id: single_cell
@@ -239,11 +258,13 @@ tools:
   revisions:
   - c0a80a16560f
   - c5d3684f7c4c
+  - d86cb2ce311b
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: scanpy_normalize
   owner: iuc
   revisions:
+  - 4bda4412b8c2
   - 9f354c7c8c92
   - ab55fe8030b6
   tool_panel_section_id: single_cell
@@ -252,6 +273,7 @@ tools:
   owner: iuc
   revisions:
   - 1072ce66b426
+  - 62acdd96d4a0
   - a8f865950ac4
   - aa0c474463c2
   tool_panel_section_id: single_cell
@@ -261,6 +283,7 @@ tools:
   revisions:
   - a39040ae0a38
   - bf2017df9837
+  - c5541bfb8feb
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: scanpy_read_10x
@@ -412,5 +435,5 @@ tools:
   owner: iuc
   revisions:
   - 3df3d1b51110
-  tool_panel_section_label: single_cell
+  tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
diff --git a/cloud/variant_calling.yml b/cloud/variant_calling.yml
index f0281f8d..193ca2da 100644
--- a/cloud/variant_calling.yml
+++ b/cloud/variant_calling.yml
@@ -26,3 +26,5 @@ tools:
   owner: iuc
 - name: jasminesv
   owner: iuc
+- name: snpeff
+  owner: iuc
diff --git a/cloud/variant_calling.yml.lock b/cloud/variant_calling.yml.lock
index 83175a2f..b04fbcbe 100644
--- a/cloud/variant_calling.yml.lock
+++ b/cloud/variant_calling.yml.lock
@@ -15,6 +15,7 @@ tools:
   revisions:
   - 4805fe3d8fda
   - 65432c3abf6c
+  - b11e8e9c23bf
   - e1461b5c52a0
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
@@ -48,6 +49,7 @@ tools:
   owner: devteam
   revisions:
   - 156b60c1530f
+  - 3e954e7125bf
   - a5937157062f
   - ef2c525bd8cd
   tool_panel_section_id: variant_calling
@@ -71,6 +73,7 @@ tools:
   - 68693743661e
   - 74aebe30fb52
   - 9473cd297a76
+  - ca2b512e8d7c
   - cfcf33df7fc0
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
@@ -84,6 +87,7 @@ tools:
 - name: sniffles
   owner: iuc
   revisions:
+  - 43fffeed243f
   - 93c4b04a0769
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
@@ -93,3 +97,14 @@ tools:
   - 2b62154e39c8
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
+- name: snpeff
+  owner: iuc
+  revisions:
+  - 5b80f544c67f
+  - 68693743661e
+  - 74aebe30fb52
+  - 9473cd297a76
+  - ca2b512e8d7c
+  - cfcf33df7fc0
+  tool_panel_section_id: variant_calling
+  tool_panel_section_label: Variant Calling
diff --git a/cloud/vcf_bcf.yml.lock b/cloud/vcf_bcf.yml.lock
index a6ec035f..f00cbcac 100644
--- a/cloud/vcf_bcf.yml.lock
+++ b/cloud/vcf_bcf.yml.lock
@@ -327,6 +327,7 @@ tools:
   owner: devteam
   revisions:
   - dd44c3f416c3
+  - ee60203e68d9
   - f0580efedada
   tool_panel_section_id: vcf_bcf
   tool_panel_section_label: VCF/BCF
@@ -351,6 +352,7 @@ tools:
 - name: vcffilter
   owner: devteam
   revisions:
+  - 4bdc111b2470
   - fa24bf0598f4
   tool_panel_section_id: vcf_bcf
   tool_panel_section_label: VCF/BCF