From d1623da805fa08a0d99b83c3321b7c6028cf258b Mon Sep 17 00:00:00 2001 From: galaxybot Date: Sat, 23 Dec 2023 03:12:45 +0000 Subject: [PATCH] Update Python dependencies --- lib/galaxy/dependencies/dev-requirements.txt | 18 +++++++++--------- .../dependencies/pinned-lint-requirements.txt | 2 +- .../dependencies/pinned-requirements.txt | 18 +++++++++--------- .../pinned-typecheck-requirements.txt | 2 +- 4 files changed, 20 insertions(+), 20 deletions(-) diff --git a/lib/galaxy/dependencies/dev-requirements.txt b/lib/galaxy/dependencies/dev-requirements.txt index dbb54daf77ee..0872758427f4 100644 --- a/lib/galaxy/dependencies/dev-requirements.txt +++ b/lib/galaxy/dependencies/dev-requirements.txt @@ -2,7 +2,7 @@ aiohttp==3.9.1 ; python_version >= "3.8" and python_version < "3.12" aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.12" alabaster==0.7.13 ; python_version >= "3.8" and python_version < "3.12" amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.12" -anyio==4.1.0 ; python_version >= "3.8" and python_version < "3.12" +anyio==4.2.0 ; python_version >= "3.8" and python_version < "3.12" ase==3.22.1 ; python_version >= "3.8" and python_version < "3.12" async-timeout==4.0.3 ; python_version >= "3.8" and python_version < "3.11" attrs==23.1.0 ; python_version >= "3.8" and python_version < "3.12" @@ -11,7 +11,7 @@ babel==2.14.0 ; python_version >= "3.8" and python_version < "3.12" backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9" backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9" billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.12" -black==23.12.0 ; python_version >= "3.8" and python_version < "3.12" +black==23.12.1 ; python_version >= "3.8" and python_version < "3.12" build==1.0.3 ; python_version >= "3.8" and python_version < "3.12" cachecontrol[filecache]==0.13.1 ; python_version >= "3.8" and python_version < "3.12" celery==5.3.6 ; python_version >= "3.8" and python_version < "3.12" @@ -25,7 +25,7 @@ click==8.1.7 ; python_version >= "3.8" and python_version < "3.12" codespell==2.2.6 ; python_version >= "3.8" and python_version < "3.12" colorama==0.4.6 ; python_version >= "3.8" and python_version < "3.12" and (sys_platform == "win32" or platform_system == "Windows" or os_name == "nt") contourpy==1.1.1 ; python_version >= "3.8" and python_version < "3.12" -coverage[toml]==7.3.3 ; python_version >= "3.8" and python_version < "3.12" +coverage[toml]==7.3.4 ; python_version >= "3.8" and python_version < "3.12" cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12" cwltest==2.4.20231031143732 ; python_version >= "3.8" and python_version < "3.12" cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.12" @@ -36,16 +36,16 @@ docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.12" exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11" filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.12" fluent-logger==0.10.0 ; python_version >= "3.8" and python_version < "3.12" -fonttools==4.46.0 ; python_version >= "3.8" and python_version < "3.12" +fonttools==4.47.0 ; python_version >= "3.8" and python_version < "3.12" frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.12" galaxy-release-util==0.1.5 ; python_version >= "3.8" and python_version < "3.12" greenlet==3.0.1 ; python_version >= "3.8" and python_version < "3.12" h11==0.14.0 ; python_version >= "3.8" and python_version < "3.12" httpcore==1.0.2 ; python_version >= "3.8" and python_version < "3.12" -httpx==0.25.2 ; python_version >= "3.8" and python_version < "3.12" +httpx==0.26.0 ; python_version >= "3.8" and python_version < "3.12" idna==3.6 ; python_version >= "3.8" and python_version < "3.12" imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.12" -importlib-metadata==7.0.0 ; python_version >= "3.8" and python_version < "3.12" +importlib-metadata==7.0.1 ; python_version >= "3.8" and python_version < "3.12" importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.10" iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "3.12" isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.12" @@ -57,7 +57,7 @@ junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.12" keyring==24.3.0 ; python_version >= "3.8" and python_version < "3.12" kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.12" kombu==5.3.4 ; python_version >= "3.8" and python_version < "3.12" -lxml==4.9.3 ; python_version >= "3.8" and python_version < "3.12" +lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.12" markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.12" markdown-it-reporter==0.0.2 ; python_version >= "3.8" and python_version < "3.12" markupsafe==2.1.3 ; python_version >= "3.8" and python_version < "3.12" @@ -87,8 +87,8 @@ pluggy==1.3.0 ; python_version >= "3.8" and python_version < "3.12" port-for==0.7.2 ; python_version >= "3.8" and python_version < "3.12" prettytable==3.9.0 ; python_version >= "3.8" and python_version < "3.12" prompt-toolkit==3.0.43 ; python_version >= "3.8" and python_version < "3.12" -psutil==5.9.6 ; python_version >= "3.8" and python_version < "3.12" and sys_platform != "cygwin" -psycopg==3.1.15 ; python_version >= "3.8" and python_version < "3.12" +psutil==5.9.7 ; python_version >= "3.8" and python_version < "3.12" and sys_platform != "cygwin" +psycopg==3.1.16 ; python_version >= "3.8" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.8" and python_version < "3.12" pyee==11.0.1 ; python_version >= "3.8" and python_version < "3.12" pygithub==2.1.1 ; python_version >= "3.8" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-lint-requirements.txt b/lib/galaxy/dependencies/pinned-lint-requirements.txt index dd4935ec9879..1acd282d8150 100644 --- a/lib/galaxy/dependencies/pinned-lint-requirements.txt +++ b/lib/galaxy/dependencies/pinned-lint-requirements.txt @@ -4,4 +4,4 @@ flake8-bugbear==23.12.2 mccabe==0.7.0 pycodestyle==2.11.1 pyflakes==3.1.0 -ruff==0.1.8 +ruff==0.1.9 diff --git a/lib/galaxy/dependencies/pinned-requirements.txt b/lib/galaxy/dependencies/pinned-requirements.txt index 625b6a60571c..b7d512dc724a 100644 --- a/lib/galaxy/dependencies/pinned-requirements.txt +++ b/lib/galaxy/dependencies/pinned-requirements.txt @@ -6,11 +6,11 @@ aiofiles==23.2.1 ; python_version >= "3.8" and python_version < "3.12" aiohttp==3.9.1 ; python_version >= "3.8" and python_version < "3.12" aioitertools==0.11.0 ; python_version >= "3.8" and python_version < "3.12" aiosignal==1.3.1 ; python_version >= "3.8" and python_version < "3.12" -alembic==1.13.0 ; python_version >= "3.8" and python_version < "3.12" +alembic==1.13.1 ; python_version >= "3.8" and python_version < "3.12" amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.12" aniso8601==9.0.1 ; python_version >= "3.8" and python_version < "3.12" -anyio==4.1.0 ; python_version >= "3.8" and python_version < "3.12" -apispec==6.3.0 ; python_version >= "3.8" and python_version < "3.12" +anyio==4.2.0 ; python_version >= "3.8" and python_version < "3.12" +apispec==6.3.1 ; python_version >= "3.8" and python_version < "3.12" appdirs==1.4.4 ; python_version >= "3.8" and python_version < "3.12" arcp==0.2.1 ; python_version >= "3.8" and python_version < "3.12" argcomplete==3.2.1 ; python_version >= "3.8" and python_version < "3.12" @@ -85,7 +85,7 @@ h5grove==1.3.0 ; python_version >= "3.8" and python_version < "3.12" h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.12" humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.12" idna==3.6 ; python_version >= "3.8" and python_version < "3.12" -importlib-metadata==7.0.0 ; python_version >= "3.8" and python_version < "3.12" +importlib-metadata==7.0.1 ; python_version >= "3.8" and python_version < "3.12" importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.9" isa-rwval==0.10.10 ; python_version >= "3.8" and python_version < "3.12" isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.12" @@ -96,7 +96,7 @@ jsonschema-specifications==2023.11.2 ; python_version >= "3.8" and python_versio jsonschema==4.20.0 ; python_version >= "3.8" and python_version < "3.12" kombu==5.3.4 ; python_version >= "3.8" and python_version < "3.12" lagom==2.6.0 ; python_version >= "3.8" and python_version < "3.12" -lxml==4.9.3 ; python_version >= "3.8" and python_version < "3.12" +lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.12" mako==1.3.0 ; python_version >= "3.8" and python_version < "3.12" markdown-it-py==3.0.0 ; python_version >= "3.8" and python_version < "3.12" markdown==3.5.1 ; python_version >= "3.8" and python_version < "3.12" @@ -117,7 +117,7 @@ oauthlib==3.2.2 ; python_version >= "3.8" and python_version < "3.12" orjson==3.9.10 ; python_version >= "3.8" and python_version < "3.12" oyaml==1.0 ; python_version >= "3.8" and python_version < "3.12" packaging==23.2 ; python_version >= "3.8" and python_version < "3.12" -paramiko==3.3.1 ; python_version >= "3.8" and python_version < "3.12" +paramiko==3.4.0 ; python_version >= "3.8" and python_version < "3.12" parsley==1.3 ; python_version >= "3.8" and python_version < "3.12" paste==3.7.1 ; python_version >= "3.8" and python_version < "3.12" pastedeploy==3.1.0 ; python_version >= "3.8" and python_version < "3.12" @@ -126,7 +126,7 @@ pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9 promise==2.3 ; python_version >= "3.8" and python_version < "3.12" prompt-toolkit==3.0.43 ; python_version >= "3.8" and python_version < "3.12" prov==1.5.1 ; python_version >= "3.8" and python_version < "3.12" -psutil==5.9.6 ; python_version >= "3.8" and python_version < "3.12" +psutil==5.9.7 ; python_version >= "3.8" and python_version < "3.12" pulsar-galaxy-lib==0.15.5 ; python_version >= "3.8" and python_version < "3.12" pyasn1==0.5.1 ; python_version >= "3.8" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.8" and python_version < "3.12" @@ -166,7 +166,7 @@ requests==2.31.0 ; python_version >= "3.8" and python_version < "3.12" rich==13.7.0 ; python_version >= "3.8" and python_version < "3.12" rocrate==0.9.0 ; python_version >= "3.8" and python_version < "3.12" routes==2.5.1 ; python_version >= "3.8" and python_version < "3.12" -rpds-py==0.13.2 ; python_version >= "3.8" and python_version < "3.12" +rpds-py==0.15.2 ; python_version >= "3.8" and python_version < "3.12" rsa==4.9 ; python_version >= "3.8" and python_version < "3.12" ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.12" and python_version >= "3.8" ruamel-yaml==0.18.5 ; python_version >= "3.8" and python_version < "3.12" @@ -201,7 +201,7 @@ tzdata==2023.3 ; python_version >= "3.8" and python_version < "3.12" tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.12" ubiquerg==0.6.3 ; python_version >= "3.8" and python_version < "3.12" urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.12" -uvicorn==0.24.0.post1 ; python_version >= "3.8" and python_version < "3.12" +uvicorn==0.25.0 ; python_version >= "3.8" and python_version < "3.12" uvloop==0.19.0 ; python_version >= "3.8" and python_version < "3.12" vine==5.1.0 ; python_version >= "3.8" and python_version < "3.12" wcwidth==0.2.12 ; python_version >= "3.8" and python_version < "3.12" diff --git a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt index dc6b6e08fbcc..57a3f369a2cc 100644 --- a/lib/galaxy/dependencies/pinned-typecheck-requirements.txt +++ b/lib/galaxy/dependencies/pinned-typecheck-requirements.txt @@ -1,7 +1,7 @@ cffi==1.16.0 ; python_version >= "3.8" and python_version < "3.12" cryptography==41.0.7 ; python_version >= "3.8" and python_version < "3.12" mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.12" -mypy==1.7.1 ; python_version >= "3.8" and python_version < "3.12" +mypy==1.8.0 ; python_version >= "3.8" and python_version < "3.12" pycparser==2.21 ; python_version >= "3.8" and python_version < "3.12" pydantic==1.10.13 ; python_version >= "3.8" and python_version < "3.12" tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11"