From a5d12ffadce94fb4660718766511483c0da6e7fb Mon Sep 17 00:00:00 2001 From: hunterckx <118154470+hunterckx@users.noreply.github.com> Date: Tue, 17 Sep 2024 16:59:49 -0700 Subject: [PATCH] feat: update organisms list (#67) --- files/build-genomes-files.py | 7 + files/out/genomes.json | 968 +++++++++++++++++++++++++++++++++++ files/source/genomes.tsv | 98 +++- 3 files changed, 1068 insertions(+), 5 deletions(-) diff --git a/files/build-genomes-files.py b/files/build-genomes-files.py index 7cf4d0f..2736a59 100644 --- a/files/build-genomes-files.py +++ b/files/build-genomes-files.py @@ -11,6 +11,9 @@ def get_duplicate_ids(genomes_df): counts = genomes_df["Genome Version/Assembly ID"].value_counts() return list(counts.index.to_series().loc[counts > 1]) +def get_num_unmatched_assemblies(assemblies_df, result_df): + return len(set(assemblies_df["asmId"]) - set(result_df["asmId"])) + def build_genomes_files(): print("Building files") @@ -27,6 +30,10 @@ def build_genomes_files(): result_df = gen_bank_merge_df.combine_first(ref_seq_merge_df).dropna(subset=["ucscBrowser"]) + num_unmatched_assemblies = get_num_unmatched_assemblies(assemblies_df, result_df) + if (num_unmatched_assemblies != 0): + print(f"{num_unmatched_assemblies} assemblies had no matches and are omitted") + result_df.to_csv(OUTPUT_PATH, index=False, sep="\t") print(f"Wrote to {OUTPUT_PATH}") diff --git a/files/out/genomes.json b/files/out/genomes.json index f39d0a6..af611e4 100644 --- a/files/out/genomes.json +++ b/files/out/genomes.json @@ -131,6 +131,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002725.2", "vEuPathDbProject": "TriTrypDB" }, + { + "chromosomes": 14, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000002765.3", + "organism": "Plasmodium falciparum 3D7", + "species": "Plasmodium falciparum", + "strain": "3D7", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002765.5", + "vEuPathDbProject": "PlasmoDB" + }, { "chromosomes": 36, "contigs": 103, @@ -1528,6 +1539,28 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000250985.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000256705.2", + "organism": "Toxoplasma gondii CAST", + "species": "Toxoplasma gondii", + "strain": "CAST", + "supercontigs": 2656, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000256705.2", + "vEuPathDbProject": "ToxoDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000256725.2", + "organism": "Toxoplasma gondii TgCatPRC2", + "species": "Toxoplasma gondii", + "strain": "TgCatPRC2", + "supercontigs": 3060, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000256725.2", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -1539,6 +1572,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000258005.1", "vEuPathDbProject": "ToxoDB" }, + { + "chromosomes": 0, + "contigs": 6995, + "genomeVersionAssemblyId": "GCA_000259835.1", + "organism": "Toxoplasma gondii TgCATBr5", + "species": "Toxoplasma gondii", + "strain": "TgCATBr5", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000259835.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -1627,6 +1671,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000277815.2", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 6177, + "genomeVersionAssemblyId": "GCA_000278365.1", + "organism": "Toxoplasma gondii CtCo5", + "species": "Toxoplasma gondii", + "strain": "CtCo5", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000278365.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 13, "contigs": 0, @@ -1748,6 +1803,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000321355.1", "vEuPathDbProject": "PlasmoDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000325525.2", + "organism": "Toxoplasma gondii GAB2-2007-GAL-DOM2", + "species": "Toxoplasma gondii", + "strain": "GAB2-2007-GAL-DOM2", + "supercontigs": 2481, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000325525.2", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 15007, @@ -1836,6 +1902,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000333975.2", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 4075, + "genomeVersionAssemblyId": "GCA_000338675.2", + "organism": "Toxoplasma gondii COUG", + "species": "Toxoplasma gondii", + "strain": "COUG", + "supercontigs": 105, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000338675.2", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2375,6 +2452,28 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000499425.1", "vEuPathDbProject": "ToxoDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000499445.1", + "organism": "Eimeria praecox Houghton", + "species": "Eimeria praecox", + "strain": "Houghton", + "supercontigs": 21348, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000499445.1", + "vEuPathDbProject": "ToxoDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000499545.1", + "organism": "Eimeria tenella strain Houghton", + "species": "Eimeria tenella", + "strain": "strain Houghton", + "supercontigs": 4664, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000499545.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2386,6 +2485,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000499605.1", "vEuPathDbProject": "ToxoDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000499725.1", + "organism": "Eimeria brunetti Houghton", + "species": "Eimeria brunetti", + "strain": "Houghton", + "supercontigs": 8575, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000499725.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2441,6 +2551,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000524495.1", "vEuPathDbProject": "PlasmoDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000524515.1", + "organism": "Plasmodium vinckei petteri strain CR", + "species": "Plasmodium vinckei", + "strain": "petteri strain CR", + "supercontigs": 66, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000524515.1", + "vEuPathDbProject": "PlasmoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2573,6 +2694,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000709125.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 5, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000723445.1", + "organism": "Babesia bigemina strain BOND", + "species": "Babesia bigemina", + "strain": "strain BOND", + "supercontigs": 478, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000723445.1", + "vEuPathDbProject": "PiroplasmaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2595,6 +2727,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000723685.1", "vEuPathDbProject": "PlasmoDB" }, + { + "chromosomes": 0, + "contigs": 701, + "genomeVersionAssemblyId": "GCA_000727475.1", + "organism": "Sarcocystis neurona SN3", + "species": "Sarcocystis neurona", + "strain": "SN3", + "supercontigs": 171, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000727475.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 176, @@ -2694,6 +2837,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000803265.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 78, + "genomeVersionAssemblyId": "GCA_000804495.1", + "organism": "Cryptosporidium hominis 37999", + "species": "Cryptosporidium hominis", + "strain": "37999", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000804495.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2738,6 +2892,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000828355.1", "vEuPathDbProject": "VectorBase" }, + { + "chromosomes": 0, + "contigs": 853, + "genomeVersionAssemblyId": "GCA_000831705.1", + "organism": "Cryptosporidium sp. chipmunk LX-2015", + "species": "Cryptosporidium sp.", + "strain": "chipmunk LX-2015", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000831705.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2859,6 +3024,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000855695.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_000875885.1", + "organism": "Sarcocystis neurona SO SN1", + "species": "Sarcocystis neurona", + "strain": "SO SN1", + "supercontigs": 3066, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000875885.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -2958,6 +3134,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001077435.1", "vEuPathDbProject": "VectorBase" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_001077455.2", + "organism": "Babesia divergens strain Rouen 1987", + "species": "Babesia divergens", + "strain": "strain Rouen 1987", + "supercontigs": 141, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001077455.2", + "vEuPathDbProject": "PiroplasmaDB" + }, { "chromosomes": 15, "contigs": 0, @@ -2969,6 +3156,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001078035.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_001179505.1", + "organism": "Vitrella brassicaformis CCMP3155", + "species": "Vitrella brassicaformis", + "strain": "CCMP3155", + "supercontigs": 1064, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001179505.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -3156,6 +3354,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_001477535.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 53, + "genomeVersionAssemblyId": "GCA_001483515.1", + "organism": "Cryptosporidium hominis isolate 30976", + "species": "Cryptosporidium hominis", + "strain": "isolate 30976", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001483515.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 0, "contigs": 11196, @@ -3167,6 +3376,61 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001593125.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 441, + "genomeVersionAssemblyId": "GCA_001593265.1", + "organism": "Toxoplasma gondii RH 2016", + "species": "Toxoplasma gondii", + "strain": "RH 2016", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001593265.1", + "vEuPathDbProject": "ToxoDB" + }, + { + "chromosomes": 0, + "contigs": 57, + "genomeVersionAssemblyId": "GCA_001593445.1", + "organism": "Cryptosporidium meleagridis strain UKMEL1", + "species": "Cryptosporidium meleagridis", + "strain": "strain UKMEL1", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001593445.1", + "vEuPathDbProject": "CryptoDB" + }, + { + "chromosomes": 0, + "contigs": 153, + "genomeVersionAssemblyId": "GCA_001593455.1", + "organism": "Cryptosporidium baileyi TAMU-09Q1", + "species": "Cryptosporidium baileyi", + "strain": "TAMU-09Q1", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001593455.1", + "vEuPathDbProject": "CryptoDB" + }, + { + "chromosomes": 0, + "contigs": 119, + "genomeVersionAssemblyId": "GCA_001593465.1", + "organism": "Cryptosporidium hominis isolate TU502_2012", + "species": "Cryptosporidium hominis", + "strain": "isolate TU502_2012", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001593465.1", + "vEuPathDbProject": "CryptoDB" + }, + { + "chromosomes": 0, + "contigs": 156, + "genomeVersionAssemblyId": "GCA_001593475.1", + "organism": "Cryptosporidium hominis UKH1", + "species": "Cryptosporidium hominis", + "strain": "UKH1", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001593475.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -3211,6 +3475,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_001602025.1", "vEuPathDbProject": "PlasmoDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_001625125.1", + "organism": "Haemoproteus tartakovskyi strain SISKIN1", + "species": "Haemoproteus tartakovskyi", + "strain": "strain SISKIN1", + "supercontigs": 2982, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001625125.1", + "vEuPathDbProject": "PlasmoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -3277,6 +3552,39 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001642415.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 234, + "genomeVersionAssemblyId": "GCA_001650055.1", + "organism": "Babesia microti strain ATCC 30222", + "species": "Babesia microti", + "strain": "strain ATCC 30222", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001650055.1", + "vEuPathDbProject": "PiroplasmaDB" + }, + { + "chromosomes": 0, + "contigs": 250, + "genomeVersionAssemblyId": "GCA_001650075.1", + "organism": "Babesia microti strain GreenwichYale_Lab_strain_1", + "species": "Babesia microti", + "strain": "strain GreenwichYale_Lab_strain_1", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001650075.1", + "vEuPathDbProject": "PiroplasmaDB" + }, + { + "chromosomes": 0, + "contigs": 140, + "genomeVersionAssemblyId": "GCA_001650105.1", + "organism": "Babesia microti strain GI", + "species": "Babesia microti", + "strain": "strain GI", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_001650105.1", + "vEuPathDbProject": "PiroplasmaDB" + }, { "chromosomes": 0, "contigs": 0, @@ -3673,6 +3981,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_002127715.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_002140095.1", + "organism": "Plasmodium knowlesi strain Malayan Strain Pk1 A", + "species": "Plasmodium knowlesi", + "strain": "strain Malayan Strain Pk1 A", + "supercontigs": 28, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_002140095.1", + "vEuPathDbProject": "PlasmoDB" + }, { "chromosomes": 3, "contigs": 0, @@ -3717,6 +4036,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_002219105.2", "vEuPathDbProject": "TriTrypDB" }, + { + "chromosomes": 8, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_002223825.1", + "organism": "Cryptosporidium hominis UdeA01", + "species": "Cryptosporidium hominis", + "strain": "UdeA01", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_002223825.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -3728,6 +4058,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_002237265.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 751, + "genomeVersionAssemblyId": "GCA_002271815.1", + "organism": "Eimeria falciformis Bayer Haberkorn 1970", + "species": "Eimeria falciformis", + "strain": "Bayer Haberkorn 1970", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_002271815.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 1624, @@ -3761,6 +4102,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_002563875.1", "vEuPathDbProject": "ToxoDB" }, + { + "chromosomes": 0, + "contigs": 14627, + "genomeVersionAssemblyId": "GCA_002600585.1", + "organism": "Cystoisospora suis strain Wien I", + "species": "Cystoisospora suis", + "strain": "strain Wien I", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_002600585.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 929, @@ -4179,6 +4531,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_003344705.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_003402215.1", + "organism": "Plasmodium vivax PvSY56", + "species": "Plasmodium vivax", + "strain": "PvSY56", + "supercontigs": 14, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_003402215.1", + "vEuPathDbProject": "PlasmoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -4520,6 +4883,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_004919615.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_004936735.2", + "organism": "Cryptosporidium sp. chipmunk genotype I strain 37763", + "species": "Cryptosporidium sp. chipmunk genotype I", + "strain": "strain 37763", + "supercontigs": 50, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_004936735.2", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -4542,6 +4916,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_006535955.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 8, + "contigs": 3, + "genomeVersionAssemblyId": "GCA_007210665.1", + "organism": "Cryptosporidium tyzzeri isolate UGA55", + "species": "Cryptosporidium tyzzeri", + "strain": "isolate UGA55", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_007210665.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 17, "contigs": 0, @@ -4663,6 +5048,50 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_009731335.1", "vEuPathDbProject": "TriTrypDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_009761425.1", + "organism": "Plasmodium falciparum NF135.C10", + "species": "Plasmodium falciparum", + "strain": "NF135.C10", + "supercontigs": 21, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_009761425.1", + "vEuPathDbProject": "PlasmoDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_009761475.1", + "organism": "Plasmodium falciparum NF54", + "species": "Plasmodium falciparum", + "strain": "NF54", + "supercontigs": 28, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_009761475.1", + "vEuPathDbProject": "PlasmoDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_009761515.1", + "organism": "Plasmodium falciparum NF166", + "species": "Plasmodium falciparum", + "strain": "NF166", + "supercontigs": 30, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_009761515.1", + "vEuPathDbProject": "PlasmoDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_009761555.1", + "organism": "Plasmodium falciparum 7G8 2019", + "species": "Plasmodium falciparum", + "strain": "7G8 2019", + "supercontigs": 20, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_009761555.1", + "vEuPathDbProject": "PlasmoDB" + }, { "chromosomes": 0, "contigs": 0, @@ -4718,6 +5147,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_011037195.1", "vEuPathDbProject": "VectorBase" }, + { + "chromosomes": 13, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_013099955.1", + "organism": "Toxoplasma gondii RH-88", + "species": "Toxoplasma gondii", + "strain": "RH-88", + "supercontigs": 183, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_013099955.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 7, "contigs": 0, @@ -4861,6 +5301,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_014805705.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_014898695.1", + "organism": "Toxoplasma gondii strain ME49xCTG F1 S27", + "species": "Toxoplasma gondii", + "strain": "strain ME49xCTG F1 S27", + "supercontigs": 48, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_014898695.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 43, "contigs": 359, @@ -4916,6 +5367,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_015832245.1", "vEuPathDbProject": "MicrosporidiaDB" }, + { + "chromosomes": 13, + "contigs": 31, + "genomeVersionAssemblyId": "GCA_016097395.1", + "organism": "Neospora caninum 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"contigs": 0, + "genomeVersionAssemblyId": "GCA_905310635.1", + "organism": "Eimeria tenella Houghton 2021", + "species": "Eimeria tenella", + "strain": "Houghton 2021", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_905310635.1", + "vEuPathDbProject": "ToxoDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_914969965.1", + "organism": "Plasmodium vivax PvW1", + "species": "Plasmodium vivax", + "strain": "PvW1", + "supercontigs": 19, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_914969965.1", + "vEuPathDbProject": "PlasmoDB" + }, { "chromosomes": 36, "contigs": 0, @@ -5675,6 +6610,28 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_917563935.1", "vEuPathDbProject": "TriTrypDB" }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCA_949152365.1", + "organism": "Plasmodium vivax PAM", + "species": "Plasmodium vivax", + "strain": "PAM", + "supercontigs": 28, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_949152365.1", + "vEuPathDbProject": "PlasmoDB" + }, + { + "chromosomes": 0, + "contigs": 0, + "genomeVersionAssemblyId": "GCF_000006515.1", + "organism": "Cryptosporidium muris RN66", + "species": "Cryptosporidium muris", + "strain": "RN66", + "supercontigs": 84, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000006515.1", + "vEuPathDbProject": "CryptoDB" + }, { "chromosomes": 14, "contigs": 0, @@ -5752,6 +6709,17 @@ "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_001477545.1", "vEuPathDbProject": "FungiDB" }, + { + "chromosomes": 0, + "contigs": 738, + "genomeVersionAssemblyId": "GCF_002999335.1", + "organism": "Cyclospora cayetanensis isolate NF1_C8", + "species": "Cyclospora cayetanensis", + "strain": "isolate NF1_C8", + "supercontigs": 0, + "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_002999335.1", + "vEuPathDbProject": "ToxoDB" + }, { "chromosomes": 0, "contigs": 0, diff --git a/files/source/genomes.tsv b/files/source/genomes.tsv index 0365711..a1d4bd2 100644 --- a/files/source/genomes.tsv +++ b/files/source/genomes.tsv @@ -11,6 +11,7 @@ Trypanosoma congolense IL3000 GenBank GCA_000227395.2 yes 2828 0 11 Trypanosoma Pneumocystis murina B123 INSDC GCA_000349005.2 yes 0 20 0 Pneumocystis murina B123 FungiDB 1069680.0 GCF_000349005.2_Pneumo_murina_B123_V4 GCA_000349005.2 GCF_000349005.2 True Pneumocystis murina B123 ascomycetes P.murina B123 https://genome.ucsc.edu/h/GCF_000349005.2 Aspergillus wentii DTO 134E9 GenBank GCA_001890725.1 yes 0 27 0 Aspergillus wentii DTO 134E9 FungiDB 1073089.0 GCF_001890725.1_Aspwe1 GCA_001890725.1 GCF_001890725.1 True Aspergillus wentii DTO 134E9 ascomycetes A.wentii DTO 134E9 https://genome.ucsc.edu/h/GCF_001890725.1 Penicilliopsis zonata CBS 506.65 GenBank GCA_001890105.1 yes 0 246 0 Penicilliopsis zonata CBS 506.65 FungiDB 1073090.0 GCF_001890105.1_Aspzo1 GCA_001890105.1 GCF_001890105.1 True Penicilliopsis zonata CBS 506.65 ascomycetes P.zonata CBS 506.65 https://genome.ucsc.edu/h/GCF_001890105.1 +Toxoplasma gondii COUG GenBank GCA_000338675.2 no 4075 105 0 Toxoplasma gondii COUG ToxoDB 1074873.0 GCA_000338675.2_TGCOUG_v2 GCA_000338675.2 False Toxoplasma gondii COUG apicomplexans T.gondii (COUG 2017) https://genome.ucsc.edu/h/GCA_000338675.2 Pyronema omphalodes CBS 100304 INSDC GCA_024516155.1 yes 0 260 0 Pyronema omphalodes CBS 100304 FungiDB 337075.0 GCA_024516155.1_Pyrom1 GCA_024516155.1 False Pyronema omphalodes ascomycetes P.omphalodes (CBS 144459 2022) https://genome.ucsc.edu/h/GCA_024516155.1 Fusarium odoratissimum NRRL 54006 GenBank GCA_000260195.2 no 0 418 0 Fusarium odoratissimum NRRL 54006 FungiDB 1089451.0 GCF_000260195.1_FO_II5_V1 GCA_000260195.2 GCF_000260195.1 True Fusarium odoratissimum NRRL 54006 ascomycetes F.odoratissimum NRRL 54006 https://genome.ucsc.edu/h/GCF_000260195.1 Fusarium oxysporum f. sp. melonis 26406 GenBank GCA_000260495.2 no 0 1146 0 Fusarium oxysporum f. sp. melonis 26406 FungiDB 1089452.0 GCA_000260495.2_FO_melonis_V1 GCA_000260495.2 False Fusarium oxysporum f. sp. melonis 26406 ascomycetes F.oxysporum f. sp. melonis (26406 2014) https://genome.ucsc.edu/h/GCA_000260495.2 @@ -19,6 +20,8 @@ Taphrina deformans PYCC 5710 INSDC GCA_000312925.2 yes 0 394 0 Taphrina deforman Claviceps purpurea 20.1 INSDC GCA_000347355.1 yes 0 191 0 Claviceps purpurea 20.1 FungiDB 1111077.0 GCA_000347355.1_ASM34735v1 GCA_000347355.1 False Claviceps purpurea 20.1 ergot fungus (20.1 2012) https://genome.ucsc.edu/h/GCA_000347355.1 Plasmodium cynomolgi strain B GenBank GCA_000321355.1 no 0 1649 14 Plasmodium cynomolgi strain B PlasmoDB 1120755.0 GCF_000321355.1_PcynB_1.0 GCA_000321355.1 GCF_000321355.1 True Plasmodium cynomolgi strain B apicomplexans P.cynomolgi strain (B 2012) https://genome.ucsc.edu/h/GCF_000321355.1 Macrophomina phaseolina MS6 INSDC GCA_000302655.1 yes 0 1506 0 Macrophomina phaseolina MS6 FungiDB 1126212.0 GCA_000302655.1_MphMS6_1.0 GCA_000302655.1 False Macrophomina phaseolina MS6 charcoal rot (MS6 2012) https://genome.ucsc.edu/h/GCA_000302655.1 +Toxoplasma gondii GAB2-2007-GAL-DOM2 GenBank GCA_000325525.2 no 0 2481 0 Toxoplasma gondii GAB2-2007-GAL-DOM2 ToxoDB 1130820.0 GCA_000325525.2_TGGABGALDOM2_v2.1 GCA_000325525.2 False Toxoplasma gondii GAB2-2007-GAL-DOM2 apicomplexans T.gondii (GAB2-2007-GAL-DOM2 2014) https://genome.ucsc.edu/h/GCA_000325525.2 +Toxoplasma gondii TgCatPRC2 GenBank GCA_000256725.2 no 0 3060 0 Toxoplasma gondii TgCatPRC2 ToxoDB 1130821.0 GCA_000256725.2_TGCATPRC2_v2 GCA_000256725.2 False Toxoplasma gondii TgCatPRC2 apicomplexans T.gondii (TgCatPRC2 2016) https://genome.ucsc.edu/h/GCA_000256725.2 Babesia microti strain RI GenBank GCA_000691945.2 yes 0 0 4 Babesia microti strain RI PiroplasmaDB 1133968.0 GCF_000691945.2_ASM69194v2 GCA_000691945.2 GCF_000691945.2 False Babesia microti strain RI apicomplexans B.microti strain (RI 2015) https://genome.ucsc.edu/h/GCF_000691945.2 Pleurotus ostreatus PC15 INSDC GCA_000697685.1 yes 0 12 0 Pleurotus ostreatus PC15 FungiDB 1137138.0 GCA_000697685.1_PleosPC15_2 GCA_000697685.1 False Pleurotus ostreatus PC15 oyster mushroom (PC15 2014) https://genome.ucsc.edu/h/GCA_000697685.1 Pleurotus ostreatus PC9 INSDC GCF_014466165.1 no 0 16 0 Pleurotus ostreatus PC9 FungiDB 5322.0 GCF_014466165.1_ASM1446616v1 GCA_014466165.1 GCF_014466165.1 False Pleurotus ostreatus oyster mushroom https://genome.ucsc.edu/h/GCF_014466165.1 @@ -27,16 +30,20 @@ Anncaliia algerae Undeen GenBank GCA_000313815.1 no 8427 0 0 Anncaliia algerae U Saprolegnia diclina VS20 GenBank GCA_000281045.1 yes 0 390 0 Saprolegnia diclina VS20 FungiDB 1156394.0 GCF_000281045.1_Sap_diclina_VS20_V1 GCA_000281045.1 GCF_000281045.1 True Saprolegnia diclina VS20 oomycetes (VS20 2013) https://genome.ucsc.edu/h/GCF_000281045.1 Hortaea werneckii EXF-2000 INSDC GCA_002127715.1 yes 0 628 0 Hortaea werneckii EXF-2000 FungiDB 1157616.0 GCA_002127715.1_HwerPB1 GCA_002127715.1 False Hortaea werneckii EXF-2000 ascomycetes H.werneckii (EXF-2000 2017) https://genome.ucsc.edu/h/GCA_002127715.1 Aspergillus glaucus CBS 516.65 GenBank GCA_001890805.1 yes 0 82 0 Aspergillus glaucus CBS 516.65 FungiDB 1160497.0 GCF_001890805.1_Aspgl1 GCA_001890805.1 GCF_001890805.1 True Aspergillus glaucus CBS 516.65 ascomycetes A.glaucus CBS 516.65 https://genome.ucsc.edu/h/GCF_001890805.1 +Chromera velia CCMP2878 GenBank GCA_018398765.1 yes 0 5963 0 Chromera velia CCMP2878 CryptoDB 1169474.0 GCA_018398765.1_ASM1839876v1 GCA_018398765.1 False Chromera velia CCMP2878 C.velia (CCMP2878 2021) https://genome.ucsc.edu/h/GCA_018398765.1 +Vitrella brassicaformis CCMP3155 GenBank GCA_001179505.1 yes 0 1064 0 Vitrella brassicaformis CCMP3155 CryptoDB 1169540.0 GCA_001179505.1_Vbrassicaformis GCA_001179505.1 False Vitrella brassicaformis CCMP3155 V.brassicaformis CCMP3155 (2015) https://genome.ucsc.edu/h/GCA_001179505.1 Penicillium digitatum Pd1 INSDC GCF_000315645.1 yes 0 53 0 Penicillium digitatum Pd1 FungiDB 1170230.0 GCF_000315645.1_PdigPd1_v1 GCA_000315645.2 GCF_000315645.1 False Penicillium digitatum Pd1 ascomycetes P.digitatum (Pd1 2012 refseq) https://genome.ucsc.edu/h/GCF_000315645.1 Encephalitozoon romaleae SJ-2008 GenBank GCA_000280035.2 yes 0 0 13 Encephalitozoon romaleae SJ-2008 MicrosporidiaDB 1178016.0 GCF_000280035.1_ASM28003v2 GCA_000280035.2 GCF_000280035.1 True Encephalitozoon romaleae SJ-2008 microsporidians E.romaleae SJ-2008 https://genome.ucsc.edu/h/GCF_000280035.1 Cladophialophora psammophila CBS 110553 INSDC GCA_000585535.1 yes 0 123 0 Cladophialophora psammophila CBS 110553 FungiDB 1182543.0 GCF_000585535.1_Clad_psam_CBS_110553_V1 GCA_000585535.1 GCF_000585535.1 True Cladophialophora psammophila CBS 110553 ascomycetes C.psammophila CBS 110553 https://genome.ucsc.edu/h/GCF_000585535.1 Cladophialophora yegresii CBS 114405 INSDC GCA_000585515.1 yes 0 8 0 Cladophialophora yegresii CBS 114405 FungiDB 1182544.0 GCF_000585515.1_Clad_yegr_CBS_114405_V1 GCA_000585515.1 GCF_000585515.1 True Cladophialophora yegresii CBS 114405 ascomycetes C.yegresii CBS 114405 https://genome.ucsc.edu/h/GCF_000585515.1 Exophiala aquamarina CBS 119918 INSDC GCA_000709125.1 yes 0 151 0 Exophiala aquamarina CBS 119918 FungiDB 1182545.0 GCF_000709125.1_Exop_aqua_CBS_119918_V1 GCA_000709125.1 GCF_000709125.1 True Exophiala aquamarina CBS 119918 ascomycetes E.aquamarina CBS 119918 https://genome.ucsc.edu/h/GCF_000709125.1 Trichosporon asahii var. asahii CBS 2479 INSDC GCA_000293215.1 yes 0 77 0 Trichosporon asahii var. asahii CBS 2479 FungiDB 1186058.0 GCF_000293215.1_Trichosporon_asahii_1 GCA_000293215.1 GCF_000293215.1 True Trichosporon asahii var. asahii CBS 2479 basidiomycetes T.asahii var. asahii CBS 2479 https://genome.ucsc.edu/h/GCF_000293215.1 +Toxoplasma gondii CtCo5 GenBank GCA_000278365.1 no 6177 0 0 Toxoplasma gondii CtCo5 ToxoDB 1194599.0 GCA_000278365.1_ASM27836v1 GCA_000278365.1 False Toxoplasma gondii CtCo5 apicomplexans T.gondii (CtCo5 2012) https://genome.ucsc.edu/h/GCA_000278365.1 Verticillium dahliae JR2 INSDC GCA_000400815.2 yes 0 0 8 Verticillium dahliae JR2 FungiDB 1202531.0 GCA_000400815.2_VDAG_JR2v.4.0 GCA_000400815.2 False Verticillium dahliae JR2 ascomycetes V.dahliae (JR2 2014) https://genome.ucsc.edu/h/GCA_000400815.2 Leishmania aethiopica L147 GenBank GCA_000444285.2 yes 0 124 36 Leishmania aethiopica L147 TriTrypDB 1206056.0 GCA_000444285.2_Leishmania_aethiopica-L147-2.0.3 GCA_000444285.2 False Leishmania aethiopica L147 Leishmania aethiopica (L147 2016) https://genome.ucsc.edu/h/GCA_000444285.2 Leishmania tropica L590 GenBank GCA_000410715.1 yes 0 124 36 Leishmania tropica L590 TriTrypDB 1206058.0 GCA_000410715.1_Leishmania_tropica_L590-2.0.2 GCA_000410715.1 False Leishmania tropica L590 Leishmania tropica (L590 2013) https://genome.ucsc.edu/h/GCA_000410715.1 Trypanosoma cruzi Tula cl2 GenBank GCA_000365225.1 no 43931 1780 0 Trypanosoma cruzi Tula cl2 TriTrypDB 1206070.0 GCA_000365225.1_Trypanosoma_cruzi_Tula_cl2-1.0.1 GCA_000365225.1 False Trypanosoma cruzi Tula cl2 Trypanosoma cruzi (Tula cl2 2013) https://genome.ucsc.edu/h/GCA_000365225.1 +Toxoplasma gondii RH-88 INSDC GCA_013099955.1 no 0 183 13 Toxoplasma gondii RH-88 ToxoDB 5811.0 GCA_013099955.1_tgrh88 GCA_013099955.1 False Toxoplasma gondii apicomplexans T.gondii (RH-88 2020) https://genome.ucsc.edu/h/GCA_013099955.1 Pneumocystis jirovecii SE8 GenBank GCA_000333975.2 yes 0 328 0 Pneumocystis jirovecii SE8 FungiDB 42068.0 GCA_000333975.2_ASM33397v2 GCA_000333975.2 False Pneumocystis jirovecii ascomycetes P.jirovecii (SE8 2012) https://genome.ucsc.edu/h/GCA_000333975.2 Cyphellophora europaea CBS 101466 GenBank GCA_000365145.2 yes 0 19 0 Cyphellophora europaea CBS 101466 FungiDB 1220924.0 GCF_000365145.1_Phia_euro_CBS_101466_V1 GCA_000365145.2 GCF_000365145.1 True Cyphellophora europaea CBS 101466 ascomycetes C.europaea CBS 101466 https://genome.ucsc.edu/h/GCF_000365145.1 Mucor circinelloides 1006PhL GenBank GCA_000401635.1 yes 0 470 0 Mucor circinelloides 1006PhL FungiDB 1220926.0 GCA_000401635.1_Muco_sp_1006Ph_V1 GCA_000401635.1 False Mucor circinelloides 1006PhL fungi M.circinelloides (1006PhL 2013) https://genome.ucsc.edu/h/GCA_000401635.1 @@ -51,6 +58,7 @@ Ophiostoma piceae UAMH 11346 INSDC GCA_000410735.1 yes 0 45 0 Ophiostoma piceae Lichtheimia corymbifera JMRC:FSU:9682 INSDC GCA_000723665.1 yes 0 209 0 Lichtheimia corymbifera JMRC:FSU:9682 FungiDB 1263082.0 GCA_000723665.1_454Minimus GCA_000723665.1 False Lichtheimia corymbifera JMRC:FSU:9682 mucoromycotan L.corymbifera JMRC:FSU:9682 (FSU 9682 2014) https://genome.ucsc.edu/h/GCA_000723665.1 Plasmodium vivax Sal-1 GenBank GCA_000002415.2 no 2733 0 14 Plasmodium vivax Sal-1 PlasmoDB 5855.0 GCF_000002415.2_ASM241v2 GCA_000002415.2 GCF_000002415.2 False Plasmodium vivax malaria parasite P. vivax (Salvador I 2009) https://genome.ucsc.edu/h/GCF_000002415.2 Blumeria graminis f. sp. tritici 96224 INSDC GCA_900519115.1 yes 0 0 12 Blumeria graminis f. sp. tritici 96224 FungiDB 62690.0 GCA_900519115.1_Bgt_genome_v3.16 GCA_900519115.1 False Blumeria graminis f. sp. tritici grass mildew (2019) https://genome.ucsc.edu/h/GCA_900519115.1 +Plasmodium cynomolgi strain M GenBank GCA_900180395.1 yes 40 0 14 Plasmodium cynomolgi strain M PlasmoDB 5827.0 GCA_900180395.1_PcyM GCA_900180395.1 False Plasmodium cynomolgi apicomplexans P.cynomolgi (M 2017) https://genome.ucsc.edu/h/GCA_900180395.1 Metarhizium anisopliae ARSEF 549 INSDC GCA_000814975.1 yes 0 74 0 Metarhizium anisopliae ARSEF 549 FungiDB 1276135.0 GCA_000814975.1_MAN_1.0 GCA_000814975.1 False Metarhizium anisopliae ARSEF 549 ascomycetes M.anisopliae (ARSEF 549 2015) https://genome.ucsc.edu/h/GCA_000814975.1 Zymoseptoria tritici ST99CH_3D1 INSDC GCA_900184105.1 no 0 0 21 Zymoseptoria tritici ST99CH_3D1 FungiDB 1276537.0 GCA_900184105.1_ST99CH_3D1 GCA_900184105.1 False Zymoseptoria tritici ST99CH_3D1 ascomycetes Z.tritici ST99CH_3D1 (2017) https://genome.ucsc.edu/h/GCA_900184105.1 Cladophialophora carrionii CBS 160.54 INSDC GCA_000365165.2 no 0 19 0 Cladophialophora carrionii CBS 160.54 FungiDB 1279043.0 GCF_000365165.1_Clad_carr_CBS_160_54_V1 GCA_000365165.2 GCF_000365165.1 True Cladophialophora carrionii CBS 160.54 ascomycetes C.carrionii CBS 160.54 https://genome.ucsc.edu/h/GCF_000365165.1 @@ -68,6 +76,7 @@ Aspergillus niger ATCC 13496 GenBank GCA_003344705.1 no 0 133 0 Aspergillus nige Ordospora colligata OC4 GenBank GCA_000803265.1 yes 15 0 0 Ordospora colligata OC4 MicrosporidiaDB 1354746.0 GCF_000803265.1_ASM80326v1 GCA_000803265.1 GCF_000803265.1 True Ordospora colligata OC4 microsporidians O.colligata OC4 https://genome.ucsc.edu/h/GCF_000803265.1 Encephalitozoon cuniculi EcunIII-L GenBank GCA_001078035.1 no 0 0 15 Encephalitozoon cuniculi EcunIII-L MicrosporidiaDB 1355160.0 GCA_001078035.1_ECIIIL GCA_001078035.1 False Encephalitozoon cuniculi EcunIII-L microsporidians E.cuniculi (EcunIII-L 2015) https://genome.ucsc.edu/h/GCA_001078035.1 Spraguea lophii 42_110 GenBank GCA_000430065.1 yes 1392 0 0 Spraguea lophii 42_110 MicrosporidiaDB 1358809.0 GCA_000430065.1_Sprlop1.0 GCA_000430065.1 False Spraguea lophii 42_110 microsporidians S.lophii (42_110 2013) https://genome.ucsc.edu/h/GCA_000430065.1 +Plasmodium falciparum HB3 GenBank GCA_900631985.1 no 12 0 14 Plasmodium falciparum HB3 PlasmoDB 5833.0 GCA_900631985.1_PfHB3-3 GCA_900631985.1 False Plasmodium falciparum malaria parasite P. falciparum (HB3 2018) https://genome.ucsc.edu/h/GCA_900631985.1 Aspergillus campestris IBT 28561 GenBank GCA_002847485.1 yes 62 0 0 Aspergillus campestris IBT 28561 FungiDB 1392248.0 GCF_002847485.1_Aspcam1 GCA_002847485.1 GCF_002847485.1 True Aspergillus campestris IBT 28561 ascomycetes A.campestris IBT 28561 https://genome.ucsc.edu/h/GCF_002847485.1 Aspergillus steynii IBT 23096 GenBank GCA_002849105.1 yes 37 0 0 Aspergillus steynii IBT 23096 FungiDB 1392250.0 GCF_002849105.1_Aspste1 GCA_002849105.1 GCF_002849105.1 True Aspergillus steynii IBT 23096 ascomycetes A.steynii IBT 23096 https://genome.ucsc.edu/h/GCF_002849105.1 Aspergillus novofumigatus IBT 16806 GenBank GCA_002847465.1 yes 62 0 0 Aspergillus novofumigatus IBT 16806 FungiDB 1392255.0 GCF_002847465.1_Aspnov1 GCA_002847465.1 GCF_002847465.1 True Aspergillus novofumigatus IBT 16806 ascomycetes A.novofumigatus IBT 16806 https://genome.ucsc.edu/h/GCF_002847465.1 @@ -92,6 +101,7 @@ Aspergillus ellipticus CBS 707.79 INSDC GCA_003184645.1 yes 0 518 0 Aspergillus Aspergillus heteromorphus CBS 117.55 INSDC GCA_003184545.1 yes 0 205 0 Aspergillus heteromorphus CBS 117.55 FungiDB 1448321.0 GCF_003184545.1_Asphet1 GCA_003184545.1 GCF_003184545.1 True Aspergillus heteromorphus CBS 117.55 ascomycetes A.heteromorphus CBS 117.55 https://genome.ucsc.edu/h/GCF_003184545.1 Aspergillus homomorphus CBS 101889 INSDC GCA_003184865.1 yes 0 152 0 Aspergillus homomorphus CBS 101889 FungiDB 1450537.0 GCF_003184865.1_Asphom1 GCA_003184865.1 GCF_003184865.1 True Aspergillus homomorphus CBS 101889 ascomycetes A.homomorphus CBS 101889 https://genome.ucsc.edu/h/GCF_003184865.1 Theileria equi strain WA GenBank GCA_000342415.1 yes 0 8 2 Theileria equi strain WA PiroplasmaDB 1537102.0 GCF_000342415.1_JCVI-bewag-v1.1 GCA_000342415.1 GCF_000342415.1 True Theileria equi strain WA apicomplexans T.equi strain (WA 2012) https://genome.ucsc.edu/h/GCF_000342415.1 +Cryptosporidium sp. chipmunk LX-2015 GenBank GCA_000831705.1 yes 853 0 0 Cryptosporidium sp. chipmunk LX-2015 CryptoDB 1603071.0 GCA_000831705.1_ASM83170v1 GCA_000831705.1 False Cryptosporidium sp. chipmunk LX-2015 apicomplexans C.sp. (chipmunk LX-2015 2015) https://genome.ucsc.edu/h/GCA_000831705.1 Nematocida ironsii ERTm5 INSDC GCA_001642415.1 yes 0 186 0 Nematocida ironsii ERTm5 MicrosporidiaDB 1805481.0 GCA_001642415.1_ASM164241v1 GCA_001642415.1 False Nematocida sp. ERTm5 microsporidians N.sp. (ERTm5 2016) https://genome.ucsc.edu/h/GCA_001642415.1 Trypanosoma brucei brucei TREU927 GenBank GCA_000002445.1 yes 115 0 16 Trypanosoma brucei brucei TREU927 TriTrypDB 185431.0 GCF_000002445.2_ASM244v1 GCA_000002445.1 GCF_000002445.2 True Trypanosoma brucei brucei TREU927 Trypanosoma brucei brucei (927/4 GUTat10.1 2005 kinetoplastids) https://genome.ucsc.edu/h/GCF_000002445.2 Amphiamblys sp. WSBS2006 GenBank GCA_001875675.1 yes 1727 0 0 unclassified Amphiamblys WSBS2006 MicrosporidiaDB 1866961.0 GCA_001875675.1_ASM187567v1 GCA_001875675.1 False Amphiamblys sp. WSBS2006 microsporidians A.sp. (WSBS2006 2016) https://genome.ucsc.edu/h/GCA_001875675.1 @@ -115,6 +125,7 @@ Yarrowia lipolytica CLIB122 GenBank GCA_000002525.1 yes 0 0 6 Yarrowia lipolytic Debaryomyces hansenii CBS767 INSDC GCA_000006445.2 yes 0 0 7 Debaryomyces hansenii CBS767 FungiDB 284592.0 GCF_000006445.2_ASM644v2 GCA_000006445.2 GCF_000006445.2 False Debaryomyces hansenii CBS767 budding yeast D.hansenii CBS767 https://genome.ucsc.edu/h/GCF_000006445.2 Nakaseomyces glabratus CBS 138 GenBank GCA_000002545.2 yes 0 0 13 Nakaseomyces glabratus CBS 138 FungiDB 5478.0 GCF_000002545.3_ASM254v2 GCA_000002545.2 GCF_000002545.3 False Nakaseomyces glabratus budding yeast N.glabratus (CBS 138 2008 refseq) https://genome.ucsc.edu/h/GCF_000002545.3 Encephalitozoon cuniculi GB-M1 GenBank GCA_000091225.2 yes 0 0 11 Encephalitozoon cuniculi GB-M1 MicrosporidiaDB 284813.0 GCF_000091225.2_ASM9122v2 GCA_000091225.2 GCF_000091225.2 True Encephalitozoon cuniculi GB-M1 microsporidians E.cuniculi (v2 GB-M1 2017) https://genome.ucsc.edu/h/GCF_000091225.2 +Porospora cf. gigantea A INSDC GCA_019968955.1 yes 0 787 0 Porospora gigantea A CryptoDB 2853593.0 GCF_019968955.1_MNHN_PgigA_v1 GCA_019968955.1 GCF_019968955.1 True Porospora cf. gigantea A apicomplexans P.cf. gigantea (A 2021) https://genome.ucsc.edu/h/GCF_019968955.1 Entamoeba histolytica HM-1:IMSS GenBank GCA_000208925.2 yes 0 1496 0 Entamoeba histolytica HM-1:IMSS AmoebaDB 294381.0 GCF_000208925.1_JCVI_ESG2_1.0 GCA_000208925.2 GCF_000208925.1 True Entamoeba histolytica HM-1:IMSS E.histolytica (HM-1:IMSS 2008) https://genome.ucsc.edu/h/GCF_000208925.1 Meyerozyma guilliermondii ATCC 6260 INSDC GCA_000149425.1 yes 0 9 0 Meyerozyma guilliermondii ATCC 6260 FungiDB 294746.0 GCF_000149425.1_ASM14942v1 GCA_000149425.1 GCF_000149425.1 True Meyerozyma guilliermondii ATCC 6260 budding yeast M.guilliermondii ATCC 6260 https://genome.ucsc.edu/h/GCF_000149425.1 Candida tropicalis MYA-3404 GenBank GCA_000006335.3 yes 0 23 0 Candida tropicalis MYA-3404 FungiDB 294747.0 GCF_000006335.3_ASM633v3 GCA_000006335.3 GCF_000006335.3 True Candida tropicalis MYA-3404 budding yeast C.tropicalis MYA-3404 https://genome.ucsc.edu/h/GCF_000006335.3 @@ -139,6 +150,7 @@ Leishmania major strain Friedlin GenBank GCA_000002725.2 yes 0 0 36 Leishmania m Plasmodium yoelii yoelii 17XNL GenBank GCA_000003085.2 no 5617 0 0 Plasmodium yoelii yoelii 17XNL PlasmoDB 73239.0 GCF_000003085.2_ASM308v2 GCA_000003085.2 GCF_000003085.2 True Plasmodium yoelii yoelii apicomplexans P.yoelii yoelii (17XNL 2002) https://genome.ucsc.edu/h/GCF_000003085.2 Cryptosporidium parvum Iowa II GenBank GCA_000165345.1 yes 0 0 8 Cryptosporidium parvum Iowa II CryptoDB 353152.0 GCF_000165345.1_ASM16534v1 GCA_000165345.1 GCF_000165345.1 True Cryptosporidium parvum Iowa II apicomplexans C.parvum (Iowa type II 2007) https://genome.ucsc.edu/h/GCF_000165345.1 Trypanosoma cruzi strain CL Brener GenBank GCA_000209065.1 no 29407 0 0 Trypanosoma cruzi strain CL Brener TriTrypDB 5693.0 GCF_000209065.1_ASM20906v1 GCA_000209065.1 GCF_000209065.1 True Trypanosoma cruzi Trypanosoma cruzi (CL Brener 2005 kinetoplastids) https://genome.ucsc.edu/h/GCF_000209065.1 +Plasmodium falciparum 3D7 GenBank GCA_000002765.3 yes 0 0 14 Plasmodium falciparum 3D7 PlasmoDB 36329.0 GCF_000002765.5_GCA_000002765 GCA_000002765.3 GCF_000002765.5 False Plasmodium falciparum 3D7 malaria parasite P. falciparum (3D7 2016 refseq) https://genome.ucsc.edu/h/GCF_000002765.5 Trypanosoma cruzi strain Esmeraldo GenBank GCA_000327425.1 no 15007 796 0 Trypanosoma cruzi strain Esmeraldo TriTrypDB 366581.0 GCA_000327425.1_Trypanosoma_cruzi-5.1.3 GCA_000327425.1 False Trypanosoma cruzi strain Esmeraldo Trypanosoma cruzi strain (Esmeraldo cl. 3 2013) https://genome.ucsc.edu/h/GCA_000327425.1 Neurospora crassa OR74A GenBank GCA_000182925.2 yes 0 13 7 Neurospora crassa OR74A FungiDB 367110.0 GCF_000182925.2_NC12 GCA_000182925.2 GCF_000182925.2 True Neurospora crassa OR74A ascomycetes N.crassa OR74A https://genome.ucsc.edu/h/GCF_000182925.2 Cryptococcus gattii WM276 GenBank GCA_000185945.1 yes 0 0 14 Cryptococcus gattii VGI WM276 FungiDB 367775.0 GCF_000185945.1_ASM18594v1 GCA_000185945.1 GCF_000185945.1 True Cryptococcus gattii WM276 basidiomycetes C.gattii WM276 https://genome.ucsc.edu/h/GCF_000185945.1 @@ -153,6 +165,7 @@ Schizosaccharomyces japonicus yFS275 GenBank GCA_000149845.2 yes 0 32 0 Schizosa Phytophthora infestans T30-4 GenBank GCA_000142945.1 yes 0 4921 0 Phytophthora infestans T30-4 FungiDB 403677.0 GCF_000142945.1_ASM14294v1 GCA_000142945.1 GCF_000142945.1 True Phytophthora infestans T30-4 potato late blight agent (T30-4 2009) https://genome.ucsc.edu/h/GCF_000142945.1 Coccidioides immitis RMSCC 2394 GenBank GCA_000149895.1 no 0 23 0 Coccidioides immitis RMSCC 2394 FungiDB 404692.0 GCA_000149895.1_ASM14989v1 GCA_000149895.1 False Coccidioides immitis RMSCC 2394 ascomycetes C.immitis (RMSCC 2394 2006) https://genome.ucsc.edu/h/GCA_000149895.1 Trichoderma virens Gv29-8 GenBank GCA_000170995.2 yes 93 0 0 Trichoderma virens Gv29-8 FungiDB 413071.0 GCF_000170995.1_TRIVI_v2.0 GCA_000170995.2 GCF_000170995.1 True Trichoderma virens Gv29-8 ascomycetes T.virens Gv29-8 https://genome.ucsc.edu/h/GCF_000170995.1 +Eimeria tenella strain Houghton GenBank GCA_000499545.1 no 0 4664 0 Eimeria tenella strain Houghton ToxoDB 5802.0 GCF_000499545.1_ETH001 GCA_000499545.1 GCF_000499545.1 True Eimeria tenella apicomplexans E.tenella (Houghton 2013) https://genome.ucsc.edu/h/GCF_000499545.1 Puccinia graminis f. sp. tritici CRL 75-36-700-3 GenBank GCA_000149925.1 yes 0 392 0 Puccinia graminis f. sp. tritici CRL 75-36-700-3 FungiDB 418459.0 GCF_000149925.1_ASM14992v1 GCA_000149925.1 GCF_000149925.1 True Puccinia graminis f. sp. tritici CRL 75-36-700-3 rust fungi P.graminis f. sp. tritici CRL 75-36-700-3 https://genome.ucsc.edu/h/GCF_000149925.1 Leishmania braziliensis MHOM/BR/75/M2904 GenBank GCA_000002845.2 yes 103 0 36 Leishmania braziliensis MHOM/BR/75/M2904 TriTrypDB 420245.0 GCF_000002845.2_ASM284v2 GCA_000002845.2 GCF_000002845.2 True Leishmania braziliensis MHOM/BR/75/M2904 Leishmania braziliensis (MHOM/BR/75/M2904 2011 kinetoplastids) https://genome.ucsc.edu/h/GCF_000002845.2 Aspergillus niger CBS 513.88 GenBank GCA_000002855.2 yes 0 19 0 Aspergillus niger CBS 513.88 FungiDB 5061.0 GCF_000002855.4_ASM285v2 GCA_000002855.2 GCF_000002855.4 True Aspergillus niger ascomycetes A.niger (v4 2007) https://genome.ucsc.edu/h/GCF_000002855.4 @@ -161,6 +174,7 @@ Fusarium oxysporum f. sp. lycopersici 4287 GenBank GCA_000149955.2 yes 0 70 15 F Trypanosoma rangeli SC58 GenBank GCA_000492115.1 yes 7433 0 0 Trypanosoma rangeli SC58 TriTrypDB 429131.0 GCA_000492115.1_T_rangeli_SC58v1 GCA_000492115.1 False Trypanosoma rangeli SC58 Trypanosoma rangeli (SC58 2013) https://genome.ucsc.edu/h/GCA_000492115.1 Trichoderma reesei QM6a GenBank GCA_000167675.2 yes 0 77 0 Trichoderma reesei QM6a FungiDB 431241.0 GCF_000167675.1_v2.0 GCA_000167675.2 GCF_000167675.1 True Trichoderma reesei QM6a ascomycetes T.reesei QM6a https://genome.ucsc.edu/h/GCF_000167675.1 Leishmania infantum JPCM5 GenBank GCA_900500625.2 yes 0 0 36 Leishmania infantum JPCM5 TriTrypDB 5671.0 GCA_900500625.2_LINF GCA_900500625.2 False Leishmania infantum Leishmania infantum (2020) https://genome.ucsc.edu/h/GCA_900500625.2 +Cryptosporidium muris RN66 GenBank GCF_000006515.1 yes 0 84 0 Cryptosporidium muris RN66 CryptoDB 441375.0 GCF_000006515.1_JCVI_cmg_v1.0 GCA_000006515.1 GCF_000006515.1 True Cryptosporidium muris RN66 apicomplexans C.muris (RN66 2008) https://genome.ucsc.edu/h/GCF_000006515.1 Talaromyces stipitatus ATCC 10500 GenBank GCA_000003125.1 yes 0 820 0 Talaromyces stipitatus ATCC 10500 FungiDB 441959.0 GCF_000003125.1_JCVI-TSTA1-3.0 GCA_000003125.1 GCF_000003125.1 True Talaromyces stipitatus ATCC 10500 ascomycetes T.stipitatus ATCC 10500 https://genome.ucsc.edu/h/GCF_000003125.1 Talaromyces marneffei ATCC 18224 GenBank GCA_000001985.1 yes 0 452 0 Talaromyces marneffei ATCC 18224 FungiDB 441960.0 GCF_000001985.1_JCVI-PMFA1-2.0 GCA_000001985.1 GCF_000001985.1 True Talaromyces marneffei ATCC 18224 ascomycetes T.marneffei (ATCC 18224 2008 refseq) https://genome.ucsc.edu/h/GCF_000001985.1 Coccidioides posadasii str. Silveira GenBank GCA_000170175.2 yes 0 54 0 Coccidioides posadasii str. Silveira FungiDB 443226.0 GCA_000170175.2_CPS2 GCA_000170175.2 False Coccidioides posadasii str. Silveira ascomycetes C.Silveira (Silveira 2011) https://genome.ucsc.edu/h/GCA_000170175.2 @@ -197,6 +211,7 @@ Blastomyces dermatitidis ER-3 INSDC GCA_000003525.2 yes 0 25 0 Blastomyces derma Trichophyton rubrum CBS 118892 INSDC GCA_000151425.1 yes 0 35 0 Trichophyton rubrum CBS 118892 FungiDB 559305.0 GCF_000151425.1_ASM15142v1 GCA_000151425.1 GCF_000151425.1 True Trichophyton rubrum CBS 118892 ascomycetes T.rubrum CBS 118892 https://genome.ucsc.edu/h/GCF_000151425.1 Trichophyton equinum CBS 127.97 INSDC GCA_000151175.1 yes 0 123 0 Trichophyton equinum CBS 127.97 FungiDB 559882.0 GCA_000151175.1_ASM15117v1 GCA_000151175.1 False Trichophyton equinum CBS 127.97 ascomycetes T.equinum (CBS 127.97 2008) https://genome.ucsc.edu/h/GCA_000151175.1 Neospora caninum Liverpool GenBank GCA_000208865.2 yes 52 0 14 Neospora caninum Liverpool ToxoDB 572307.0 GCF_000208865.1_ASM20886v2 GCA_000208865.2 GCF_000208865.1 True Neospora caninum Liverpool apicomplexans N.caninum (Liverpool 2011) https://genome.ucsc.edu/h/GCF_000208865.1 +Plasmodium falciparum Dd2 GenBank GCA_900632045.1 no 0 0 14 Plasmodium falciparum Dd2 PlasmoDB 5833.0 GCA_900632045.1_PfDd2-3 GCA_900632045.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632045.1 Thermothelomyces thermophilus ATCC 42464 INSDC GCA_000226095.1 yes 0 0 7 Thermothelomyces thermophilus ATCC 42464 FungiDB 573729.0 GCF_000226095.1_ASM22609v1 GCA_000226095.1 GCF_000226095.1 True Thermothelomyces thermophilus ATCC 42464 ascomycetes T.thermophilus ATCC 42464 https://genome.ucsc.edu/h/GCF_000226095.1 Candida dubliniensis CD36 INSDC GCA_000026945.1 yes 0 0 8 Candida dubliniensis CD36 FungiDB 573826.0 GCF_000026945.1_ASM2694v1 GCA_000026945.1 GCF_000026945.1 True Candida dubliniensis CD36 budding yeast C.dubliniensis CD36 https://genome.ucsc.edu/h/GCF_000026945.1 Candida parapsilosis CDC317 GenBank GCA_000182765.2 yes 0 0 8 Candida parapsilosis CDC317 FungiDB 5480.0 GCF_000182765.1_ASM18276v2 GCA_000182765.2 GCF_000182765.1 False Candida parapsilosis budding yeast C.parapsilosis https://genome.ucsc.edu/h/GCF_000182765.1 @@ -205,6 +220,7 @@ Schizophyllum commune H4-8 INSDC GCA_000143185.2 yes 0 25 0 Schizophyllum commun Nosema ceranae BRL01 GenBank GCA_000182985.1 yes 5465 0 0 Nosema ceranae BRL01 MicrosporidiaDB 578460.0 GCF_000182985.1_ASM18298v1 GCA_000182985.1 GCF_000182985.1 True Nosema ceranae BRL01 microsporidians N.ceranae (BRL01 2009) https://genome.ucsc.edu/h/GCF_000182985.1 Nosema bombycis CQ1 GenBank GCA_000383075.1 yes 0 1607 0 Nosema bombycis CQ1 MicrosporidiaDB 578461.0 GCA_000383075.1_NosBomCQ1_v1.0 GCA_000383075.1 False Nosema bombycis CQ1 microsporidians N.bombycis (CQ1 2013) https://genome.ucsc.edu/h/GCA_000383075.1 Plasmodium berghei ANKA GenBank GCA_900002375.2 yes 5 0 14 Plasmodium berghei ANKA PlasmoDB 5823.0 GCF_900002375.2_GCA_900002375 GCA_900002375.2 GCF_900002375.2 False Plasmodium berghei ANKA apicomplexans P.berghei (ANKA 2019) https://genome.ucsc.edu/h/GCF_900002375.2 +Plasmodium falciparum NF54 INSDC GCA_009761475.1 no 0 28 0 Plasmodium falciparum NF54 PlasmoDB 5833.0 GCA_009761475.1_NF54_v1 GCA_009761475.1 False Plasmodium falciparum malaria parasite P. falciparum (NF54 2019) https://genome.ucsc.edu/h/GCA_009761475.1 Plasmodium knowlesi strain H GenBank GCA_000006355.3 yes 148 0 14 Plasmodium knowlesi strain H PlasmoDB 5851.0 GCF_000006355.2_GCA_000006355.2 GCA_000006355.3 GCF_000006355.2 False Plasmodium knowlesi strain H apicomplexans P.knowlesi strain (H 2020) https://genome.ucsc.edu/h/GCF_000006355.2 Aspergillus carbonarius ITEM 5010 GenBank GCA_001990825.1 yes 0 829 0 Aspergillus carbonarius ITEM 5010 FungiDB 602072.0 GCA_001990825.1_Aspca3 GCA_001990825.1 False Aspergillus carbonarius ITEM 5010 ascomycetes A.carbonaris (ITEM 5010 2017) https://genome.ucsc.edu/h/GCA_001990825.1 Puccinia triticina 1-1 BBBD Race 1 GenBank GCA_000151525.2 yes 14818 0 0 Puccinia triticina 1-1 BBBD Race 1 FungiDB 630390.0 GCA_000151525.2_P_triticina_1_1_V2 GCA_000151525.2 False Puccinia triticina 1-1 BBBD Race 1 wheat leaf rust (1-1 BBBD Race 1 2016) https://genome.ucsc.edu/h/GCA_000151525.2 @@ -244,6 +260,8 @@ Encephalitozoon hellem ATCC 50504 GenBank GCA_000277815.3 yes 0 0 12 Encephalito Trypanosoma cruzi JR cl. 4 GenBank GCA_000331405.1 no 14752 560 0 Trypanosoma cruzi JR cl. 4 TriTrypDB 914063.0 GCA_000331405.1_Trypanosoma_cruzi_JR_cl4-1.1.4 GCA_000331405.1 False Trypanosoma cruzi JR cl. 4 Trypanosoma cruzi (JR cl. 4 2013) https://genome.ucsc.edu/h/GCA_000331405.1 Leishmania mexicana MHOM/GT/2001/U1103 GenBank GCA_000234665.4 yes 554 0 34 Leishmania mexicana MHOM/GT/2001/U1103 TriTrypDB 929439.0 GCF_000234665.1_ASM23466v4 GCA_000234665.4 GCF_000234665.1 True Leishmania mexicana MHOM/GT/2001/U1103 Leishmania mexicana (MHOM/GT/2001/U1103 2011 kinetoplastids) https://genome.ucsc.edu/h/GCF_000234665.1 Nematocida parisii ERTm3 GenBank GCA_000190615.1 no 0 53 0 Nematocida parisii ERTm3 MicrosporidiaDB 935791.0 GCA_000190615.1_Nema_parisii_ERTm3_V1 GCA_000190615.1 False Nematocida parisii ERTm3 microsporidians N.parisii (ERTm3 2011) https://genome.ucsc.edu/h/GCA_000190615.1 +Toxoplasma gondii TgCATBr5 GenBank GCA_000259835.1 no 6995 0 0 Toxoplasma gondii TgCATBr5 ToxoDB 943121.0 GCA_000259835.1_TGCATBR5 GCA_000259835.1 False Toxoplasma gondii TgCATBr5 apicomplexans T.gondii (TgCATBr5 2011) https://genome.ucsc.edu/h/GCA_000259835.1 +Toxoplasma gondii CAST GenBank GCA_000256705.2 no 0 2656 0 Toxoplasma gondii CAST ToxoDB 943122.0 GCA_000256705.2_TGCAST_v2 GCA_000256705.2 False Toxoplasma gondii CAST apicomplexans T.gondii (CAST 2018) https://genome.ucsc.edu/h/GCA_000256705.2 Vavraia culicis subsp. floridensis GenBank GCA_000192795.1 yes 0 379 0 Vavraia culicis subsp. floridensis MicrosporidiaDB 948595.0 GCF_000192795.1_Vavr_culi_floridensis_V1 GCA_000192795.1 GCF_000192795.1 True Vavraia culicis subsp. floridensis microsporidians V.culicis subsp. floridensis https://genome.ucsc.edu/h/GCF_000192795.1 Leishmania donovani BPK282A1 GenBank GCA_000227135.2 yes 0 0 36 Leishmania donovani BPK282A1 TriTrypDB 5661.0 GCF_000227135.1_ASM22713v2 GCA_000227135.2 GCF_000227135.1 True Leishmania donovani Leishmania donovani (BPK282A1 2011 kinetoplastids) https://genome.ucsc.edu/h/GCF_000227135.1 Cordyceps militaris CM01 INSDC GCA_000225605.1 no 0 32 0 Cordyceps militaris CM01 FungiDB 983644.0 GCF_000225605.1_CmilitarisCM01_v01 GCA_000225605.1 GCF_000225605.1 True Cordyceps militaris CM01 ascomycetes C.militaris CM01 https://genome.ucsc.edu/h/GCF_000225605.1 @@ -317,10 +335,19 @@ Anopheles ziemanni AzieGA1 INSDC GCF_943734765.1 yes 0 416 3 Anopheles ziemanni Blechomonas ayalai B08-376 GenBank GCA_020509355.1 yes 0 545 0 Blechomonas ayalai B08-376 TriTrypDB 1463230.0 GCA_020509355.1_ASM2050935v1 GCA_020509355.1 False Blechomonas ayalai Blechomonas ayalai (B08-376 2021) https://genome.ucsc.edu/h/GCA_020509355.1 Beauveria bassiana HN6 INSDC GCA_014607475.1 yes 0 0 12 Beauveria bassiana HN6 FungiDB 176275.0 GCA_014607475.1_ASM1460747v1 GCA_014607475.1 False Beauveria bassiana ascomycetes B.bassiana (HN6 2020) https://genome.ucsc.edu/h/GCA_014607475.1 Besnoitia besnoiti strain Bb-Ger1 GenBank GCA_002563875.1 yes 172 0 13 Besnoitia besnoiti strain Bb-Ger1 ToxoDB 94643.0 GCF_002563875.1_Bbes1.0 GCA_002563875.1 GCF_002563875.1 True Besnoitia besnoiti apicomplexans B.besnoiti (Bb-Ger1 2017) https://genome.ucsc.edu/h/GCF_002563875.1 +Babesia bigemina strain BOND GenBank GCA_000723445.1 yes 0 478 5 Babesia bigemina strain BOND PiroplasmaDB 5866.0 GCA_000723445.1_BBBOND_0001 GCA_000723445.1 False Babesia bigemina apicomplexans B.bigemina (BOND 2014) https://genome.ucsc.edu/h/GCA_000723445.1 +Babesia caballi USDA-D6B2 INSDC GCA_024862765.1 yes 0 7 0 Babesia caballi USDA-D6B2 PiroplasmaDB 5871.0 GCF_024862765.1_Bcaballi_D6B2_v1.0 GCA_024862765.1 GCF_024862765.1 False Babesia caballi apicomplexans B.caballi (USDA-D6B2 2022) https://genome.ucsc.edu/h/GCF_024862765.1 Byssoonygena ceratinophila isolate UAMH 5669 GenBank GCA_001430925.1 yes 4851 0 0 Byssoonygena ceratinophila isolate UAMH 5669 FungiDB 166112.0 GCA_001430925.1_ASM143092v1 GCA_001430925.1 False Byssoonygena ceratinophila ascomycetes B.ceratinophila (UAMH 5669 2015) https://genome.ucsc.edu/h/GCA_001430925.1 +Babesia divergens strain 1802A GenBank GCA_018398725.1 yes 0 79 0 Babesia divergens strain 1802A PiroplasmaDB 32595.0 GCA_018398725.1_ASM1839872v1 GCA_018398725.1 False Babesia divergens apicomplexans B.divergens (1802A 2021) https://genome.ucsc.edu/h/GCA_018398725.1 +Babesia divergens strain Rouen 1987 GenBank GCA_001077455.2 no 0 141 0 Babesia divergens strain Rouen 1987 PiroplasmaDB 32595.0 GCA_001077455.2_ASM107745v2 GCA_001077455.2 False Babesia divergens apicomplexans B.divergens (Rouen 1987 2018) https://genome.ucsc.edu/h/GCA_001077455.2 +Babesia duncani strain WA1 INSDC GCA_024586265.1 no 0 7 0 Babesia duncani strain WA1 PiroplasmaDB 323732.0 GCA_024586265.1_ASM2458626v1 GCA_024586265.1 False Babesia duncani apicomplexans B.duncani (WA1 2022) https://genome.ucsc.edu/h/GCA_024586265.1 +Babesia duncani strain WA1 2023 INSDC GCA_028658345.1 yes 0 160 5 Babesia duncani strain WA1 2023 PiroplasmaDB 323732.0 GCF_028658345.1_Bduncani_v1 GCA_028658345.1 GCF_028658345.1 True Babesia duncani apicomplexans B.duncani (WA1 2023) https://genome.ucsc.edu/h/GCF_028658345.1 Biomphalaria glabrata XG47 INSDC GCF_947242115.1 yes 0 25 18 Biomphalaria glabrata XG47 VectorBase 6526.0 GCF_947242115.1_xgBioGlab47.1 GCA_947242115.1 GCF_947242115.1 False Biomphalaria glabrata bloodfluke planorb (primary hap 2022) https://genome.ucsc.edu/h/GCF_947242115.1 Blumeria graminis f. sp. triticale THUN-12 INSDC GCA_905067625.1 no 0 25 11 Blumeria graminis f. sp. triticale THUN-12 FungiDB 1689686.0 GCA_905067625.1_Bgtriticale_THUN12_genome_v1_2 GCA_905067625.1 False Blumeria graminis f. sp. triticale grass mildew (THUN-12 2021) https://genome.ucsc.edu/h/GCA_905067625.1 Blumeria hordei strain RACE1 INSDC GCA_900237765.1 yes 0 99 0 Blumeria hordei strain RACE1 FungiDB 2867405.0 GCA_900237765.1_BghRACE1_v1 GCA_900237765.1 False Blumeria hordei grass mildew (RACE1 RACE1 2018) https://genome.ucsc.edu/h/GCA_900237765.1 +Babesia microti strain ATCC 30222 INSDC GCA_001650055.1 no 234 0 0 Babesia microti strain ATCC 30222 PiroplasmaDB 5868.0 GCA_001650055.1_ASM165005v1 GCA_001650055.1 False Babesia microti apicomplexans B.microti (ATCC 30222 2016) https://genome.ucsc.edu/h/GCA_001650055.1 +Babesia microti strain GI INSDC GCA_001650105.1 no 140 0 0 Babesia microti strain GI PiroplasmaDB 5868.0 GCA_001650105.1_ASM165010v1 GCA_001650105.1 False Babesia microti apicomplexans B.microti (GI 2016) https://genome.ucsc.edu/h/GCA_001650105.1 +Babesia microti strain GreenwichYale_Lab_strain_1 INSDC GCA_001650075.1 no 250 0 0 Babesia microti strain GreenwichYale_Lab_strain_1 PiroplasmaDB 5868.0 GCA_001650075.1_ASM165007v1 GCA_001650075.1 False Babesia microti apicomplexans B.microti (GreenwichYale_Lab_strain_1 2016) https://genome.ucsc.edu/h/GCA_001650075.1 Blastocrithidia nonstop P57 INSDC GCA_028554745.1 yes 0 77 0 Blastocrithidia nonstop P57 TriTrypDB 2592485.0 GCA_028554745.1_ASM2855474v1 GCA_028554745.1 False Blastocrithidia sp. p57 Blastocrithidia sp. (p57 2023) https://genome.ucsc.edu/h/GCA_028554745.1 Babesia ovata strain Miyake GenBank GCA_002897235.1 yes 91 0 0 Babesia ovata strain Miyake PiroplasmaDB 189622.0 GCF_002897235.1_Bovata_7.1 GCA_002897235.1 GCF_002897235.1 True Babesia ovata apicomplexans B.ovata (Miyake 2017) https://genome.ucsc.edu/h/GCF_002897235.1 Blastomyces percursus strain EI222 INSDC GCA_001883805.1 yes 0 3868 0 Blastomyces percursus strain EI222 FungiDB 1658174.0 GCA_001883805.1_Blas_perc_EI222_V1 GCA_001883805.1 False Blastomyces percursus ascomycetes B.percursus (EI222 2016) https://genome.ucsc.edu/h/GCA_001883805.1 @@ -328,37 +355,50 @@ Bodo saltans strain Lake Konstanz GenBank GCA_001460835.1 yes 0 2256 0 Bodo salt Babesia sp. Xinjiang Xinjiang GenBank GCA_002095265.1 yes 0 215 0 Babesia sp. Xinjiang Xinjiang PiroplasmaDB 462227.0 GCF_002095265.1_B_xinjiang1.0 GCA_002095265.1 GCF_002095265.1 True Babesia sp. Xinjiang apicomplexans B.sp. (Xinjiang 2017) https://genome.ucsc.edu/h/GCF_002095265.1 Cryptosporidium andersoni isolate 30847 GenBank GCA_001865355.1 yes 135 0 0 Cryptosporidium andersoni isolate 30847 CryptoDB 117008.0 GCF_001865355.1_ASM186535v1 GCA_001865355.1 GCF_001865355.1 True Cryptosporidium andersoni apicomplexans C.andersoni (30847 2016) https://genome.ucsc.edu/h/GCF_001865355.1 Candida auris strain 6684 INSDC GCA_001189475.1 no 0 99 0 [Candida] auris 6684 FungiDB 498019.0 GCF_001189475.1_ASM118947v1 GCA_001189475.1 GCF_001189475.1 True Candida auris budding yeast C.auris (6684 2015 refseq) https://genome.ucsc.edu/h/GCF_001189475.1 -Candida auris strain B11220 INSDC GCA_003013715.2 no 0 0 7 [Candida] auris B11220 FungiDB 498019.0 GCF_003013715.1_ASM301371v2 GCA_003013715.2 GCF_003013715.1 True Candida auris budding yeast C.auris (B11220 2019) https://genome.ucsc.edu/h/GCF_003013715.1 +Candida auris strain B11220 INSDC GCA_003013715.2 no 0 0 7 [Candida] auris B11220 FungiDB 498019.0 GCF_003013715.1_ASM301371v2 GCA_003013715.2 GCF_003013715.1 True Candidozyma auris budding yeast C.auris (B11220 2019) https://genome.ucsc.edu/h/GCF_003013715.1 Candida auris strain B11221 INSDC GCA_002775015.1 no 0 20 0 [Candida] auris B11221 FungiDB 498019.0 GCF_002775015.1_Cand_auris_B11221_V1 GCA_002775015.1 GCF_002775015.1 True Candida auris budding yeast C.auris (B11221 2017 refseq) https://genome.ucsc.edu/h/GCF_002775015.1 Candida auris strain B11243 INSDC GCA_003014415.1 no 0 238 0 [Candida] auris B11243 FungiDB 498019.0 GCA_003014415.1_Cand_auris_B11243 GCA_003014415.1 False Candida auris budding yeast C.auris (B11243 2018) https://genome.ucsc.edu/h/GCA_003014415.1 Candida auris strain B11245 INSDC GCA_008275145.1 no 0 0 7 [Candida] auris B11245 FungiDB 498019.0 GCA_008275145.1_ASM827514v1 GCA_008275145.1 False Candida auris budding yeast C.auris (B11245 2019) https://genome.ucsc.edu/h/GCA_008275145.1 +Cryptosporidium baileyi TAMU-09Q1 GenBank GCA_001593455.1 yes 153 0 0 Cryptosporidium baileyi TAMU-09Q1 CryptoDB 27987.0 GCA_001593455.1_CryBaiTAMU-09Q1-1.0 GCA_001593455.1 False Cryptosporidium baileyi apicomplexans C.baileyi (TAMU-09Q1 2016) https://genome.ucsc.edu/h/GCA_001593455.1 Cryptosporidium bovis isolate 45015 INSDC GCA_009768925.2 yes 0 55 0 Cryptosporidium bovis isolate 45015 CryptoDB 310047.0 GCF_009768925.1_ASM976892v2 GCA_009768925.2 GCF_009768925.1 True Cryptosporidium bovis apicomplexans C.bovis (45015 2021) https://genome.ucsc.edu/h/GCF_009768925.1 Cladophialophora carrionii KSF GenBank GCA_001700775.1 yes 22 0 0 Cladophialophora carrionii KSF FungiDB 86049.0 GCA_001700775.1_ASM170077v1 GCA_001700775.1 False Cladophialophora carrionii ascomycetes C.carrionii (KSF 2016) https://genome.ucsc.edu/h/GCA_001700775.1 Cyclospora cayetanensis strain CHN_HEN01 GenBank GCA_000769155.2 yes 2297 0 0 Cyclospora cayetanensis strain CHN_HEN01 ToxoDB 88456.0 GCF_000769155.1_ASM76915v2 GCA_000769155.2 GCF_000769155.1 True Cyclospora cayetanensis apicomplexans C.cayetanensis (CHN_HEN01 2016) https://genome.ucsc.edu/h/GCF_000769155.1 +Cyclospora cayetanensis isolate NF1_C8 GenBank GCF_002999335.1 no 738 0 0 Cyclospora cayetanensis isolate NF1_C8 ToxoDB 88456.0 GCF_002999335.1_CcayRef3 GCA_002999335.1 GCF_002999335.1 True Cyclospora cayetanensis apicomplexans C.cayetanensis (NF1_C8 2018) https://genome.ucsc.edu/h/GCF_002999335.1 Cryptococcus cf. gattii MF34 INSDC GCA_009650685.1 yes 0 2 13 Cryptococcus cf. gattii MF34 FungiDB 2268382.0 GCA_009650685.1_Cryp_gatt_MF34 GCA_009650685.1 False Cryptococcus gattii VGV basidiomycetes C.gattii VGV (MF34 2019) https://genome.ucsc.edu/h/GCA_009650685.1 Coprinopsis cinerea #326 INSDC GCA_016772295.1 no 0 31 0 Coprinopsis cinerea #326 FungiDB 1132390.0 GCA_016772295.1_ASM1677229v1 GCA_016772295.1 False Coprinopsis cinerea AmutBmut pab1-1 basidiomycetes C.cinerea (A43mut B43mut pab1-1 #326 2021) https://genome.ucsc.edu/h/GCA_016772295.1 Curvularia clavata yc1106 INSDC GCA_023920165.1 yes 0 0 8 Curvularia clavata yc1106 FungiDB 95742.0 GCA_023920165.1_ASM2392016v1 GCA_023920165.1 False Curvularia clavata ascomycetes C.clavata (yc1106 2022) https://genome.ucsc.edu/h/GCA_023920165.1 Cucumispora dikerogammari Dv6 INSDC GCA_014805705.1 yes 0 7783 0 Cucumispora dikerogammari Dv6 MicrosporidiaDB 658444.0 GCA_014805705.1_ASM1480570v1 GCA_014805705.1 False Cucumispora dikerogammari microsporidians C.dikerogammari (Dv6 2020) https://genome.ucsc.edu/h/GCA_014805705.1 -Candida duobushaemulonis strain B09383 GenBank GCA_002926085.1 yes 7 0 0 [Candida] duobushaemulonis B09383 FungiDB 1231522.0 GCF_002926085.2_CanDuoHae_v1.0 GCA_002926085.1 GCF_002926085.2 True Candida duobushaemuli budding yeast C.duobushaemulonis https://genome.ucsc.edu/h/GCF_002926085.2 +Candida duobushaemulonis strain B09383 GenBank GCA_002926085.1 yes 7 0 0 [Candida] duobushaemulonis B09383 FungiDB 1231522.0 GCF_002926085.2_CanDuoHae_v1.0 GCA_002926085.1 GCF_002926085.2 True Candidozyma duobushaemuli budding yeast C.duobushaemulonis https://genome.ucsc.edu/h/GCF_002926085.2 Cyberlindnera fabianii 65 INSDC GCA_001983305.1 yes 0 25 0 Cyberlindnera fabianii 65 FungiDB 36022.0 GCA_001983305.1_ASM198330v1 GCA_001983305.1 False Cyberlindnera fabianii budding yeast C.fabianii (65 2017) https://genome.ucsc.edu/h/GCA_001983305.1 Crithidia fasciculata strain Cf-Cl GenBank GCA_000331325.2 yes 0 427 30 Crithidia fasciculata strain Cf-Cl TriTrypDB 5656.0 GCA_000331325.2_Crithidia_fasciculata-14.0 GCA_000331325.2 False Crithidia fasciculata Crithidia fasciculata (Cf-Cl 2015) https://genome.ucsc.edu/h/GCA_000331325.2 -Candida haemulonis B11899 GenBank GCA_002926055.1 yes 11 0 0 [Candida] haemuloni B11899 FungiDB 45357.0 GCF_002926055.2_CanHae_1.0 GCA_002926055.1 GCF_002926055.2 True Candida haemuli budding yeast C.haemuloni https://genome.ucsc.edu/h/GCF_002926055.2 +Cytauxzoon felis strain Winnie INSDC GCA_020283715.1 yes 0 358 0 Cytauxzoon felis strain Winnie PiroplasmaDB 27996.0 GCA_020283715.1_ASM2028371v1 GCA_020283715.1 False Cytauxzoon felis apicomplexans C.felis (Winnie 2021) https://genome.ucsc.edu/h/GCA_020283715.1 +Candida haemulonis B11899 GenBank GCA_002926055.1 yes 11 0 0 [Candida] haemuloni B11899 FungiDB 45357.0 GCF_002926055.2_CanHae_1.0 GCA_002926055.1 GCF_002926055.2 True Candidozyma haemuli budding yeast C.haemuloni https://genome.ucsc.edu/h/GCF_002926055.2 +Cryptosporidium hominis isolate 30976 GenBank GCA_001483515.1 no 53 0 0 Cryptosporidium hominis isolate 30976 CryptoDB 237895.0 GCA_001483515.1_ASM148351v1 GCA_001483515.1 False Cryptosporidium hominis apicomplexans C.hominis (30976 2015) https://genome.ucsc.edu/h/GCA_001483515.1 +Cryptosporidium hominis 37999 GenBank GCA_000804495.1 no 78 0 0 Cryptosporidium hominis 37999 CryptoDB 237895.0 GCA_000804495.1_ASM80449v1 GCA_000804495.1 False Cryptosporidium hominis apicomplexans C.hominis (37999 2014) https://genome.ucsc.edu/h/GCA_000804495.1 +Cryptosporidium hominis isolate TU502_2012 GenBank GCA_001593465.1 no 119 0 0 Cryptosporidium hominis isolate TU502_2012 CryptoDB 237895.0 GCA_001593465.1_CryHomTU502-1.0 GCA_001593465.1 False Cryptosporidium hominis apicomplexans C.hominis (TU502_2012 2016) https://genome.ucsc.edu/h/GCA_001593465.1 +Cryptosporidium hominis UKH1 GenBank GCA_001593475.1 no 156 0 0 Cryptosporidium hominis UKH1 CryptoDB 237895.0 GCA_001593475.1_CryHomUKH1-1.0 GCA_001593475.1 False Cryptosporidium hominis apicomplexans C.hominis (UKH1 2016) https://genome.ucsc.edu/h/GCA_001593475.1 +Cryptosporidium hominis UdeA01 GenBank GCA_002223825.1 no 0 0 8 Cryptosporidium hominis UdeA01 CryptoDB 237895.0 GCA_002223825.1_C.hominis.v1 GCA_002223825.1 False Cryptosporidium hominis apicomplexans C.hominis (2015) https://genome.ucsc.edu/h/GCA_002223825.1 Cladophialophora immunda strain CBS 83496 GenBank GCA_000835495.1 yes 0 277 0 Cladophialophora immunda strain CBS 83496 FungiDB 569365.0 GCF_000835495.1_Clad_immu_CBS83496_V1 GCA_000835495.1 GCF_000835495.1 True Cladophialophora immunda ascomycetes C.immunda https://genome.ucsc.edu/h/GCF_000835495.1 Coccidioides immitis WA_211 INSDC GCA_004115165.2 no 0 62 0 Coccidioides immitis WA_211 FungiDB 5501.0 GCA_004115165.2_Cimm211_ragoo GCA_004115165.2 False Coccidioides immitis ascomycetes C.immitis (WA_211 2019) https://genome.ucsc.edu/h/GCA_004115165.2 Cimex lectularius Harlan INSDC GCA_000648675.3 yes 1156 417 0 Cimex lectularius Harlan VectorBase 79782.0 GCF_000648675.2_Clec_2.1 GCA_000648675.3 GCF_000648675.2 False Cimex lectularius bed bug https://genome.ucsc.edu/h/GCF_000648675.2 Canis lupus familiaris isolate SID07034 INSDC GCA_014441545.1 yes 0 336 40 Canis lupus familiaris isolate SID07034 HostDB 9615.0 GCF_014441545.1_ROS_Cfam_1.0 GCA_014441545.1 GCF_014441545.1 False Canis lupus familiaris dog (labrador SID07034 2020) https://genome.ucsc.edu/h/GCF_014441545.1 +Cryptosporidium meleagridis strain UKMEL1 GenBank GCA_001593445.1 yes 57 0 0 Cryptosporidium meleagridis strain UKMEL1 CryptoDB 93969.0 GCA_001593445.1_CryMelUKMEL1-1.0 GCA_001593445.1 False Cryptosporidium meleagridis apicomplexans C.meleagridis (UKMEL1 2016) https://genome.ucsc.edu/h/GCA_001593445.1 Candida metapsilosis BP57 INSDC GCA_017655625.1 yes 0 9 0 Candida metapsilosis BP57 FungiDB 273372.0 GCA_017655625.1_BP57 GCA_017655625.1 False Candida metapsilosis budding yeast C.metapsilosis (2021) https://genome.ucsc.edu/h/GCA_017655625.1 Cordyceps militaris ATCC 34164 INSDC GCA_008080495.1 yes 0 0 7 Cordyceps militaris ATCC 34164 FungiDB 73501.0 GCA_008080495.1_ASM808049v1 GCA_008080495.1 False Cordyceps militaris ascomycetes C.militaris (ATCC 34164 2017) https://genome.ucsc.edu/h/GCA_008080495.1 Cryptococcus neoformans var. grubii H99 2018 INSDC GCA_003011985.1 no 0 14 0 Cryptococcus neoformans var. grubii H99 2018 FungiDB 178876.0 GCA_003011985.1_ASM301198v1 GCA_003011985.1 False Cryptococcus neoformans var. grubii basidiomycetes C.neoformans var. grubii (H99 2018) https://genome.ucsc.edu/h/GCA_003011985.1 Cryptococcus neoformans var. grubii KN99 GenBank GCA_002216725.1 no 0 0 14 Cryptococcus neoformans var. grubii KN99 FungiDB 178876.0 GCA_002216725.1_ASM221672v1 GCA_002216725.1 False Cryptococcus neoformans var. grubii basidiomycetes C.neoformans var. grubii (KN99 2017) https://genome.ucsc.edu/h/GCA_002216725.1 Cryptococcus neoformans strain:VNII INSDC GCA_022832995.1 no 0 0 14 Cryptococcus neoformans strain:VNII FungiDB 5207.0 GCA_022832995.1_ASM2283299v1 GCA_022832995.1 False Cryptococcus neoformans basidiomycetes C.neoformans (VNII 2022) https://genome.ucsc.edu/h/GCA_022832995.1 +Cryptosporidium parvum 2022 INSDC GCA_019844115.2 no 0 0 8 Cryptosporidium parvum 2022 CryptoDB 5807.0 GCA_019844115.2_ASM1984411v2 GCA_019844115.2 False Cryptosporidium parvum apicomplexans C.parvum (2021) https://genome.ucsc.edu/h/GCA_019844115.2 Cavia porcellus 2N INSDC GCA_000151735.1 yes 0 3143 0 Cavia porcellus 2N HostDB 10141.0 GCF_000151735.1_Cavpor3.0 GCA_000151735.1 GCF_000151735.1 False Cavia porcellus domestic guinea pig (2N 2008 refseq) https://genome.ucsc.edu/h/GCF_000151735.1 -Candida pseudohaemulonii strain B12108 INSDC GCA_003013735.1 yes 0 36 0 [Candida] pseudohaemulonis B12108 FungiDB 418784.0 GCF_003013735.1_Cand_pseudohaemulonii_B12108 GCA_003013735.1 GCF_003013735.1 True Candida pseudohaemuli budding yeast C.pseudohaemulonis https://genome.ucsc.edu/h/GCF_003013735.1 +Candida pseudohaemulonii strain B12108 INSDC GCA_003013735.1 yes 0 36 0 [Candida] pseudohaemulonis B12108 FungiDB 418784.0 GCF_003013735.1_Cand_pseudohaemulonii_B12108 GCA_003013735.1 GCF_003013735.1 True Candidozyma pseudohaemuli budding yeast C.pseudohaemulonis https://genome.ucsc.edu/h/GCF_003013735.1 Chrysosporium queenslandicum isolate CBS 280.77 GenBank GCA_001430955.1 yes 2724 0 0 Chrysosporium queenslandicum isolate CBS 280.77 FungiDB 264361.0 GCA_001430955.1_ASM143095v1 GCA_001430955.1 False Chrysosporium queenslandicum ascomycetes C.queenslandicum (CBS 280.77 2015) https://genome.ucsc.edu/h/GCA_001430955.1 Culex quinquefasciatus JHB 2020 INSDC GCA_015732765.1 yes 53 0 3 Culex quinquefasciatus JHB 2020 VectorBase 7176.0 GCF_015732765.1_VPISU_Cqui_1.0_pri_paternal GCA_015732765.1 GCF_015732765.1 False Culex quinquefasciatus southern house mosquito https://genome.ucsc.edu/h/GCF_015732765.1 Culex quinquefasciatus Johannesburg INSDC GCA_000209185.1 no 0 3171 0 Culex quinquefasciatus Johannesburg VectorBase 7176.0 GCF_000209185.1_CulPip1.0 GCA_000209185.1 GCF_000209185.1 True Culex quinquefasciatus southern house mosquito (JHB 2007) https://genome.ucsc.edu/h/GCF_000209185.1 Cryptosporidium ryanae 45019 INSDC GCA_009792415.2 yes 0 93 0 Cryptosporidium ryanae 45019 CryptoDB 515981.0 GCF_009792415.1_ASM979241v2 GCA_009792415.2 GCF_009792415.1 True Cryptosporidium ryanae apicomplexans C.ryanae (45019 2022) https://genome.ucsc.edu/h/GCF_009792415.1 +Cryptosporidium sp. chipmunk genotype I strain 37763 INSDC GCA_004936735.2 yes 0 50 0 Cryptosporidium sp. chipmunk genotype I strain 37763 CryptoDB 1280935.0 GCA_004936735.2_CCh_genotype_I GCA_004936735.2 GCF_004936735.1 True Cryptosporidium sp. chipmunk genotype I apicomplexans C.sp. chipmunk genotype I (37763 2021) https://genome.ucsc.edu/h/GCA_004936735.2 +Cystoisospora suis strain Wien I GenBank GCA_002600585.1 yes 14627 0 0 Cystoisospora suis strain Wien I ToxoDB 483139.0 GCF_002600585.1_ASM260058v1 GCA_002600585.1 GCF_002600585.1 False Cystoisospora suis apicomplexans C.suis (Wien I 2017) https://genome.ucsc.edu/h/GCF_002600585.1 Candida tropicalis MYA-3404 2020 INSDC GCA_013177555.1 no 0 0 7 Candida tropicalis MYA-3404 2020 FungiDB 5482.0 GCA_013177555.1_ASM1317755v1 GCA_013177555.1 False Candida tropicalis budding yeast C.tropicalis (MYA-3404 2020) https://genome.ucsc.edu/h/GCA_013177555.1 +Cryptosporidium tyzzeri isolate UGA55 GenBank GCA_007210665.1 yes 3 0 8 Cryptosporidium tyzzeri isolate UGA55 CryptoDB 756076.0 GCA_007210665.1_Ctyz_UGA_55 GCA_007210665.1 False Cryptosporidium tyzzeri apicomplexans C.tyzzeri (UGA55 2019) https://genome.ucsc.edu/h/GCA_007210665.1 Cryptosporidium ubiquitum isolate 39726 GenBank GCA_001865345.1 yes 39 0 0 Cryptosporidium ubiquitum isolate 39726 CryptoDB 857276.0 GCF_001865345.1_ASM186534v1 GCA_001865345.1 GCF_001865345.1 True Cryptosporidium ubiquitum apicomplexans C.ubiquitum (39726 2016) https://genome.ucsc.edu/h/GCF_001865345.1 Dermacentor andersoni qqDerAnde1.1 INSDC GCA_023375915.1 no 0 8198 0 Dermacentor andersoni qqDerAnde1.1 VectorBase 34620.0 GCA_023375915.1_qqDerAnde1.1_alternate_haplotype GCA_023375915.1 False Dermacentor andersoni mite/tick D.andersoni (qqDerAnde1 alternate hap 2022) https://genome.ucsc.edu/h/GCA_023375915.1 Dermacentor andersoni qqDerAnde1.2 INSDC GCF_023375885.1 yes 0 3118 0 Dermacentor andersoni qqDerAnde1.2 VectorBase 34620.0 GCF_023375885.1_qqDerAnde1.2 GCA_023375885.2 GCF_023375885.1 False Dermacentor andersoni mites & ticks D.andersoni (primary hap 2022) https://genome.ucsc.edu/h/GCF_023375885.1 @@ -370,7 +410,9 @@ Diutina rugosa CBS 613 INSDC GCA_008704595.1 yes 0 169 0 Diutina rugosa CBS 613 Dermacentor silvarum Dsil-2018 INSDC GCA_013339745.2 yes 0 1653 11 Dermacentor silvarum Dsil-2018 VectorBase 543639.0 GCF_013339745.2_BIME_Dsil_1.4 GCA_013339745.2 GCF_013339745.2 False Dermacentor silvarum mites & ticks D.silvarum (v2 Dsil-2018 2022) https://genome.ucsc.edu/h/GCF_013339745.2 Eimeria acervulina Houghton GenBank GCA_000499425.1 yes 0 3415 0 Eimeria acervulina Houghton ToxoDB 5801.0 GCF_000499425.1_EAH001 GCA_000499425.1 GCF_000499425.1 True Eimeria acervulina apicomplexans E.acervulina (Houghton 2013) https://genome.ucsc.edu/h/GCF_000499425.1 Emergomyces africanus CBS 136260 INSDC GCA_001660665.1 yes 0 4444 0 Emergomyces africanus CBS 136260 FungiDB 1955775.0 GCA_001660665.1_Emmo_afri_EA111 GCA_001660665.1 False Emergomyces africanus ascomycetes E.africanus (CBS 136260 2016) https://genome.ucsc.edu/h/GCA_001660665.1 +Eimeria brunetti Houghton GenBank GCA_000499725.1 yes 0 8575 0 Eimeria brunetti Houghton ToxoDB 51314.0 GCA_000499725.1_EBH001 GCA_000499725.1 False Eimeria brunetti apicomplexans E.brunetti (Houghton 2013) https://genome.ucsc.edu/h/GCA_000499725.1 Enterospora canceri strain GB1 GenBank GCA_002087915.1 yes 537 0 0 Enterospora canceri strain GB1 MicrosporidiaDB 1081671.0 GCA_002087915.1_ASM208791v1 GCA_002087915.1 False Enterospora canceri microsporidians E.canceri (GB1 2017) https://genome.ucsc.edu/h/GCA_002087915.1 +Eimeria falciformis Bayer Haberkorn 1970 GenBank GCA_002271815.1 yes 751 0 0 Eimeria falciformis Bayer Haberkorn 1970 ToxoDB 84963.0 GCA_002271815.1_ASM227181v1 GCA_002271815.1 False Eimeria falciformis apicomplexans E.falciformis (Bayer Haberkorn 1970 2017) https://genome.ucsc.edu/h/GCA_002271815.1 Encephalitozoon hellem Swiss GenBank GCA_018342045.1 no 0 32 0 Encephalitozoon hellem Swiss MicrosporidiaDB 27973.0 GCA_018342045.1_Swiss_hellem_version_1 GCA_018342045.1 False Encephalitozoon hellem microsporidians E.hellem (Swiss 2021) https://genome.ucsc.edu/h/GCA_018342045.1 Enterocytozoon hepatopenaei EHP-ID16 INSDC GCA_003709115.1 no 0 162 0 Enterocytozoon hepatopenaei EHP-ID16 MicrosporidiaDB 646526.0 GCA_003709115.1_ASM370911v1 GCA_003709115.1 False Ecytonucleospora hepatopenaei microsporidians E.hepatopenaei (EHP-ID16 2018) https://genome.ucsc.edu/h/GCA_003709115.1 Enterocytozoon hepatopenaei strain TH1 GenBank GCA_002081675.1 yes 62 0 0 Enterocytozoon hepatopenaei strain TH1 MicrosporidiaDB 646526.0 GCA_002081675.1_ASM208167v1 GCA_002081675.1 False Ecytonucleospora hepatopenaei microsporidians E.hepatopenaei (TH1 2017) https://genome.ucsc.edu/h/GCA_002081675.1 @@ -381,7 +423,9 @@ Endotrypanum monterogeii strain LV88 GenBank GCA_000333855.2 yes 0 1925 36 Endot Eimeria necatrix Houghton GenBank GCA_000499385.1 yes 0 3707 0 Eimeria necatrix Houghton ToxoDB 51315.0 GCF_000499385.1_ENH001 GCA_000499385.1 GCF_000499385.1 True Eimeria necatrix apicomplexans E.necatrix (Houghton 2013) https://genome.ucsc.edu/h/GCF_000499385.1 Exophiala oligosperma strain CBS 72588 GenBank GCA_000835515.1 yes 0 143 0 Exophiala oligosperma strain CBS 72588 FungiDB 215243.0 GCF_000835515.1_Exop_olig_CBS72588_V1 GCA_000835515.1 GCF_000835515.1 True Exophiala oligosperma ascomycetes E.oligosperma https://genome.ucsc.edu/h/GCF_000835515.1 Emergomyces orientalis 5z489 INSDC GCA_002110485.1 yes 0 108 0 Emergomyces orientalis 5z489 FungiDB 1972497.0 GCA_002110485.1_ASM211048v1 GCA_002110485.1 False Emergomyces orientalis ascomycetes E.orientalis (5z489 2017) https://genome.ucsc.edu/h/GCA_002110485.1 +Eimeria praecox Houghton GenBank GCA_000499445.1 yes 0 21348 0 Eimeria praecox Houghton ToxoDB 51316.0 GCA_000499445.1_EPH001 GCA_000499445.1 False Eimeria praecox apicomplexans E.praecox (Houghton 2013) https://genome.ucsc.edu/h/GCA_000499445.1 Exophiala spinifera CBS 89968 INSDC GCA_000836115.1 yes 0 28 0 Exophiala spinifera CBS 89968 FungiDB 91928.0 GCF_000836115.1_Exop_spin_CBS89968_V1 GCA_000836115.1 GCF_000836115.1 True Exophiala spinifera ascomycetes E.spinifera https://genome.ucsc.edu/h/GCF_000836115.1 +Eimeria tenella Houghton 2021 INSDC GCA_905310635.1 yes 0 0 15 Eimeria tenella Houghton 2021 ToxoDB 5802.0 GCA_905310635.1_pEimTen1.1 GCA_905310635.1 False Eimeria tenella apicomplexans E.tenella (2021) https://genome.ucsc.edu/h/GCA_905310635.1 Fusarium circinatum NRRL 25331 INSDC GCA_013396185.1 yes 0 1222 0 Fusarium circinatum NRRL 25331 FungiDB 48490.0 GCA_013396185.1_ASM1339618v1 GCA_013396185.1 False Fusarium circinatum ascomycetes F.circinatum (NRRL 25331 2020) https://genome.ucsc.edu/h/GCA_013396185.1 Fusarium graminearum DAOM 233423 INSDC GCA_000966635.1 no 0 869 0 Fusarium graminearum DAOM 233423 FungiDB 5518.0 GCA_000966635.1_Fus_gra_233423_v1 GCA_000966635.1 False Fusarium graminearum ascomycetes F.graminearum (233423 2015) https://genome.ucsc.edu/h/GCA_000966635.1 Fusarium mangiferae MRC7560 INSDC GCA_900044065.1 yes 0 254 0 Fusarium mangiferae MRC7560 FungiDB 192010.0 GCF_900044065.1_Genome_assembly_version_1 GCA_900044065.1 GCF_900044065.1 True Fusarium mangiferae ascomycetes F.mangiferae MRC7560 https://genome.ucsc.edu/h/GCF_900044065.1 @@ -406,6 +450,8 @@ Hanseniaspora guilliermondii strain UTAD222 INSDC GCA_900119595.1 yes 0 208 0 Ha Hammondia hammondi strain H.H.34 GenBank GCA_000258005.2 yes 0 14860 0 Hammondia hammondi strain H.H.34 ToxoDB 99158.0 GCF_000258005.1_HHA1_v02 GCA_000258005.2 GCF_000258005.1 True Hammondia hammondi apicomplexans H.hammondi (H.H.34 2014) https://genome.ucsc.edu/h/GCF_000258005.1 Hamiltosporidium magnivora BE-OM-2 INSDC GCA_004325065.1 yes 0 3550 0 Hamiltosporidium magnivora BE-OM-2 MicrosporidiaDB 148818.0 GCA_004325065.1_BEOM2_v1 GCA_004325065.1 False Hamiltosporidium magnivora microsporidians H.magnivora (BE-OM-2 2019) https://genome.ucsc.edu/h/GCA_004325065.1 Hamiltosporidium magnivora IL-BN-2 INSDC GCA_004325035.1 no 0 3833 0 Hamiltosporidium magnivora IL-BN-2 MicrosporidiaDB 148818.0 GCA_004325035.1_ASM432503v1 GCA_004325035.1 False Hamiltosporidium magnivora microsporidians H.magnivora (IL-BN-2 2019) https://genome.ucsc.edu/h/GCA_004325035.1 +Hepatocystis sp. ex Piliocolobus tephrosceles 2019 INSDC GCA_902459845.2 yes 0 2439 0 Hepatocystis sp. ex Piliocolobus tephrosceles 2019 PlasmoDB 2600580.0 GCA_902459845.2_HEP1 GCA_902459845.2 False Hepatocystis sp. ex Piliocolobus tephrosceles apicomplexans H.sp. ex Piliocolobus tephrosceles (2020) https://genome.ucsc.edu/h/GCA_902459845.2 +Haemoproteus tartakovskyi strain SISKIN1 INSDC GCA_001625125.1 yes 0 2982 0 Haemoproteus tartakovskyi strain SISKIN1 PlasmoDB 707206.0 GCA_001625125.1_ASM162512v1 GCA_001625125.1 False Haemoproteus tartakovskyi apicomplexans H.tartakovskyi (SISKIN1 2016) https://genome.ucsc.edu/h/GCA_001625125.1 Hamiltosporidium tvaerminnensis FI-OER-3-3 INSDC GCA_004325045.1 yes 0 2915 0 Hamiltosporidium tvaerminnensis FI-OER-3-3 MicrosporidiaDB 1176355.0 GCA_004325045.1_FIOER33_v1 GCA_004325045.1 False Hamiltosporidium tvaerminnensis microsporidians H.tvaerminnensis (FI-OER-3-3 2019) https://genome.ucsc.edu/h/GCA_004325045.1 Hamiltosporidium tvaerminnensis IL-G-3 INSDC GCA_004325075.1 no 0 2738 0 Hamiltosporidium tvaerminnensis IL-G-3 MicrosporidiaDB 1176355.0 GCA_004325075.1_ILG3_v1 GCA_004325075.1 False Hamiltosporidium tvaerminnensis microsporidians H.tvaerminnensis (IL-G-3 2019) https://genome.ucsc.edu/h/GCA_004325075.1 Hanseniaspora uvarum strain AWRI3580 INSDC GCA_001747055.1 yes 0 18 0 Hanseniaspora uvarum strain AWRI3580 FungiDB 29833.0 GCA_001747055.1_ASM174705v1 GCA_001747055.1 False Hanseniaspora uvarum budding yeast H.uvarum (AWRI3580 2016) https://genome.ucsc.edu/h/GCA_001747055.1 @@ -427,6 +473,7 @@ Lutzomyia longipalpis Jacobina INSDC GCA_000265325.1 no 0 11532 0 Lutzomyia long Lutzomyia longipalpis M1 INSDC GCF_024334085.1 yes 0 0 4 Lutzomyia longipalpis M1 VectorBase 7200.0 GCF_024334085.1_ASM2433408v1 GCA_024334085.1 GCF_024334085.1 True Lutzomyia longipalpis fly L.longipalpis (SR_M1_2022 2022) https://genome.ucsc.edu/h/GCF_024334085.1 Leishmania major Friedlin 2021 INSDC GCA_916722125.1 no 0 0 36 Leishmania major Friedlin 2021 TriTrypDB 347515.0 GCA_916722125.1_LMJFC_annotationDEFINITIVO GCA_916722125.1 False Leishmania major strain Friedlin Leishmania major strain (Friedlin 2021) https://genome.ucsc.edu/h/GCA_916722125.1 Leishmania martiniquensis LEM2494 GenBank GCA_000409445.2 yes 0 215 36 Leishmania martiniquensis LEM2494 TriTrypDB 1303197.0 GCA_000409445.2_Leishmania_MAR_LEM2494-1.0.3 GCA_000409445.2 False Leishmania sp. MAR LEM2494 Leishmania sp. MAR (LEM2494 2016) https://genome.ucsc.edu/h/GCA_000409445.2 +Leishmania martiniquensis MHOM/TH/2012/LSCM1 INSDC GCA_017916325.1 no 0 6 36 Leishmania martiniquensis MHOM/TH/2012/LSCM1 TriTrypDB 1580590.0 GCF_017916325.1_LU_Lmar_1.0 GCA_017916325.1 GCF_017916325.1 True Leishmania martiniquensis Leishmania martiniquensis (LSCM1 2021 refseq) https://genome.ucsc.edu/h/GCF_017916325.1 Leishmania orientalis MHOM/TH/2014/LSCM4 INSDC GCA_017916335.1 yes 0 62 36 Leishmania orientalis MHOM/TH/2014/LSCM4 TriTrypDB 2249476.0 GCF_017916335.1_LU_Lori_1.0 GCA_017916335.1 GCF_017916335.1 True Leishmania orientalis Leishmania orientalis (LSCM4 2021) https://genome.ucsc.edu/h/GCF_017916335.1 Leishmania panamensis strain MHOM/PA/94/PSC-1 GenBank GCA_000755165.1 no 0 0 35 Leishmania panamensis strain MHOM/PA/94/PSC-1 TriTrypDB 5679.0 GCF_000755165.1_ASM75516v1 GCA_000755165.1 GCF_000755165.1 True Leishmania panamensis Leishmania panamensis (MHOM/PA/94/PSC-1 2014 kinetoplastids) https://genome.ucsc.edu/h/GCF_000755165.1 Lomentospora prolificans JHH-5317 GenBank GCA_002276285.1 yes 1624 0 0 Lomentospora prolificans JHH-5317 FungiDB 41688.0 GCA_002276285.1_Lprolificans_pilon GCA_002276285.1 False Lomentospora prolificans ascomycetes L.prolificans (JHH-5317 2017) https://genome.ucsc.edu/h/GCA_002276285.1 @@ -451,6 +498,7 @@ Naganishia albida JCM2334 GenBank GCA_001599735.1 no 74 0 0 Naganishia albida JC Naganishia albida NRRL Y-1402 GenBank GCA_001444555.1 yes 834 0 0 Naganishia albida NRRL Y-1402 FungiDB 100951.0 GCA_001444555.1_ASM144455v1 GCA_001444555.1 False Naganishia albida basidiomycetes N.albida (NRRL Y-1402 2015) https://genome.ucsc.edu/h/GCA_001444555.1 Nematocida ausubeli ERTm2 GenBank GCA_000250695.1 yes 0 202 0 Nematocida ausubeli ERTm2 MicrosporidiaDB 1913371.0 GCA_000250695.1_Nema_parisii_ERTm2_V1 GCA_000250695.1 False Nematocida ausubeli microsporidians N.ausubeli (ERTm2 2012) https://genome.ucsc.edu/h/GCA_000250695.1 Nematocida ausubeli ERTm6 GenBank GCA_000738915.1 no 0 22 0 Nematocida ausubeli ERTm6 MicrosporidiaDB 1913371.0 GCF_000738915.1_Nema_sp_1_ERTm6_V2 GCA_000738915.1 GCF_000738915.1 True Nematocida ausubeli microsporidians N.ausubeli (ERTm6 2014) https://genome.ucsc.edu/h/GCF_000738915.1 +Neospora caninum Liverpool 2019 INSDC GCA_016097395.1 no 31 0 13 Neospora caninum Liverpool 2019 ToxoDB 29176.0 GCA_016097395.1_Ncaninum_LIV GCA_016097395.1 False Neospora caninum apicomplexans N.caninum (Liverpool 2020) https://genome.ucsc.edu/h/GCA_016097395.1 Nosema ceranae BRL INSDC GCA_004919615.1 no 0 110 0 Nosema ceranae BRL MicrosporidiaDB 40302.0 GCA_004919615.1_Ncer_3.0 GCA_004919615.1 False Vairimorpha ceranae microsporidians V.ceranae (BRL 2019) https://genome.ucsc.edu/h/GCA_004919615.1 Nosema ceranae strain PA08_1199 GenBank GCA_000988165.1 no 536 0 0 Nosema ceranae strain PA08_1199 MicrosporidiaDB 40302.0 GCF_000988165.1_ASM98816v1 GCA_000988165.1 GCF_000988165.1 True Vairimorpha ceranae microsporidians N.ceranae https://genome.ucsc.edu/h/GCF_000988165.1 Nematocida displodere strain JUm2807 GenBank GCA_001642395.1 yes 40 0 0 Nematocida displodere strain JUm2807 MicrosporidiaDB 1805483.0 GCA_001642395.1_ASM164239v1 GCA_001642395.1 False Nematocida displodere microsporidians N.displodere (JUm2807 2016) https://genome.ucsc.edu/h/GCA_001642395.1 @@ -464,36 +512,71 @@ Nematocida major JUm2507 INSDC GCA_021653875.1 yes 0 111 0 Nematocida major JUm2 Plasmodium adleri G01 GenBank GCA_900097015.1 yes 68 0 14 Plasmodium adleri G01 PlasmoDB 880535.0 GCF_900097015.1_PADLG01 GCA_900097015.1 GCF_900097015.1 True Plasmodium sp. gorilla clade G2 apicomplexans P.sp. gorilla clade G2 (2018) https://genome.ucsc.edu/h/GCF_900097015.1 Podosphaera aphanis DRCT72020 INSDC GCA_022627015.2 yes 0 12702 0 Podosphaera aphanis DRCT72020 FungiDB 79252.0 GCA_022627015.2_ASM2262701v2 GCA_022627015.2 False Podosphaera aphanis powdery mildews (DRCT72020 2022) https://genome.ucsc.edu/h/GCA_022627015.2 Phlebotomus argentipes India INSDC GCF_947086385.1 yes 0 64 0 Phlebotomus argentipes India VectorBase 94469.0 GCF_947086385.1_Phlebotomus_argentipes_genome_assembly GCA_947086385.1 GCF_947086385.1 True Phlebotomus argentipes fly P.argentipes (2022) https://genome.ucsc.edu/h/GCF_947086385.1 -Phialophora attinorum CBS 131958 INSDC GCF_001299255.1 yes 0 131 0 Phialophora attinorum CBS 131958 FungiDB 1664694.0 GCF_001299255.1_ASM129925v1 GCA_001299255.1 GCF_001299255.1 True Phialophora attinorum ascomycetes P.attinorum https://genome.ucsc.edu/h/GCF_001299255.1 +Phialophora attinorum CBS 131958 INSDC GCF_001299255.1 yes 0 131 0 Phialophora attinorum CBS 131958 FungiDB 1664694.0 GCF_001299255.1_ASM129925v1 GCA_001299255.1 GCF_001299255.1 True Cyphellophora attinorum ascomycetes P.attinorum https://genome.ucsc.edu/h/GCF_001299255.1 +Plasmodium billcollinsi G01 GenBank GCA_900257145.2 yes 0 0 14 Plasmodium billcollinsi G01 PlasmoDB 720590.0 GCA_900257145.2_Plasmodium_billcollinsi GCA_900257145.2 False Plasmodium sp. DRC-Itaito apicomplexans P.sp. DRC-Itaito (2020) https://genome.ucsc.edu/h/GCA_900257145.2 +Plasmodium blacklocki G01 GenBank GCA_900097035.1 yes 83 0 14 Plasmodium blacklocki G01 PlasmoDB 880536.0 GCA_900097035.1_PBLACG01 GCA_900097035.1 False Plasmodium sp. gorilla clade G3 apicomplexans P.sp. gorilla clade G3 (2018) https://genome.ucsc.edu/h/GCA_900097035.1 Plasmodium brasilianum strain Bolivian I INSDC GCA_023973825.1 yes 0 29 14 Plasmodium brasilianum strain Bolivian I PlasmoDB 5824.0 GCF_023973825.1_ASM2397382v1 GCA_023973825.1 GCF_023973825.1 False Plasmodium brasilianum apicomplexans P.brasilianum (Bolivian I 2022) https://genome.ucsc.edu/h/GCF_023973825.1 Pneumocystis canis CanA INSDC GCA_017788925.1 yes 0 33 0 Pneumocystis canis CanA FungiDB 2698477.0 GCA_017788925.1_ASM1778892v1 GCA_017788925.1 False Pneumocystis canis ascomycetes P.canis (CanA 2021) https://genome.ucsc.edu/h/GCA_017788925.1 Plasmodium coatneyi Hackeri GenBank GCA_001680005.1 yes 0 0 14 Plasmodium coatneyi Hackeri PlasmoDB 208452.0 GCF_001680005.1_ASM168000v1 GCA_001680005.1 GCF_001680005.1 True Plasmodium coatneyi apicomplexans P.coatneyi (Hackeri 2016) https://genome.ucsc.edu/h/GCF_001680005.1 Podospora comata strain T mat+ INSDC GCA_900290415.1 yes 0 0 7 Podospora comata strain T mat+ FungiDB 48703.0 GCA_900290415.1_version1 GCA_900290415.1 False Podospora comata ascomycetes P.comata (T 2018) https://genome.ucsc.edu/h/GCA_900290415.1 Paratrypanosoma confusum CUL13 GenBank GCA_002921335.1 yes 1922 266 0 Paratrypanosoma confusum CUL13 TriTrypDB 1470209.0 GCA_002921335.1_ASM292133v1 GCA_002921335.1 False Paratrypanosoma confusum Paratrypanosoma confusum (CUL13MS 2018) https://genome.ucsc.edu/h/GCA_002921335.1 Penicillium expansum d1 INSDC GCA_000769735.1 yes 0 270 0 Penicillium expansum d1 FungiDB 27334.0 GCA_000769735.1_ASM76973v1 GCA_000769735.1 False Penicillium expansum ascomycetes P.expansum (d1 2014) https://genome.ucsc.edu/h/GCA_000769735.1 +Plasmodium falciparum 7G8 2019 INSDC GCA_009761555.1 no 0 20 0 Plasmodium falciparum 7G8 2019 PlasmoDB 5833.0 GCA_009761555.1_7G8_v1 GCA_009761555.1 False Plasmodium falciparum malaria parasite P. falciparum (7G8 2019) https://genome.ucsc.edu/h/GCA_009761555.1 +Plasmodium falciparum CD01 GenBank GCA_900617135.1 no 5 0 14 Plasmodium falciparum CD01 PlasmoDB 5833.0 GCA_900617135.1_PfCD01-2 GCA_900617135.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900617135.1 +Plasmodium falciparum GA01 GenBank GCA_900632005.1 no 4 0 14 Plasmodium falciparum GA01 PlasmoDB 5833.0 GCA_900632005.1_PfGA01-3 GCA_900632005.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632005.1 +Plasmodium falciparum GB4 GenBank GCA_900632035.1 no 10 0 14 Plasmodium falciparum GB4 PlasmoDB 5833.0 GCA_900632035.1_PfGB4-3 GCA_900632035.1 False Plasmodium falciparum malaria parasite P. falciparum (GB4 2018) https://genome.ucsc.edu/h/GCA_900632035.1 +Plasmodium falciparum GN01 GenBank GCA_900631995.1 no 3 0 14 Plasmodium falciparum GN01 PlasmoDB 5833.0 GCA_900631995.1_PfGN01-3 GCA_900631995.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900631995.1 +Plasmodium falciparum IT GenBank GCA_900632055.1 no 11 0 14 Plasmodium falciparum IT PlasmoDB 5833.0 GCA_900632055.1_PfIT-3 GCA_900632055.1 False Plasmodium falciparum malaria parasite P. falciparum (type strain: I 2018) https://genome.ucsc.edu/h/GCA_900632055.1 +Plasmodium falciparum KE01 GenBank GCA_900631975.1 no 5 0 14 Plasmodium falciparum KE01 PlasmoDB 5833.0 GCA_900631975.1_PfKE01-3 GCA_900631975.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900631975.1 +Plasmodium falciparum KH01 GenBank GCA_900632025.1 no 6 0 14 Plasmodium falciparum KH01 PlasmoDB 5833.0 GCA_900632025.1_PfKH01-3 GCA_900632025.1 False Plasmodium falciparum malaria parasite P. falciparum (KH1 2018) https://genome.ucsc.edu/h/GCA_900632025.1 +Plasmodium falciparum KH02 GenBank GCA_900632015.1 no 5 0 14 Plasmodium falciparum KH02 PlasmoDB 5833.0 GCA_900632015.1_PfKH02-3 GCA_900632015.1 False Plasmodium falciparum malaria parasite P. falciparum (KH2 2018) https://genome.ucsc.edu/h/GCA_900632015.1 +Plasmodium falciparum ML01 GenBank GCA_900632085.1 no 101 0 14 Plasmodium falciparum ML01 PlasmoDB 5833.0 GCA_900632085.1_PfML01-3 GCA_900632085.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632085.1 +Plasmodium falciparum NF135.C10 INSDC GCA_009761425.1 no 0 21 0 Plasmodium falciparum NF135.C10 PlasmoDB 5833.0 GCA_009761425.1_NF135.C10_v1 GCA_009761425.1 False Plasmodium falciparum malaria parasite P. falciparum (NF135.C10 2019) https://genome.ucsc.edu/h/GCA_009761425.1 +Plasmodium falciparum NF166 INSDC GCA_009761515.1 no 0 30 0 Plasmodium falciparum NF166 PlasmoDB 5833.0 GCA_009761515.1_NF166_v1 GCA_009761515.1 False Plasmodium falciparum malaria parasite P. falciparum (NF166 2019) https://genome.ucsc.edu/h/GCA_009761515.1 +Plasmodium falciparum SD01 GenBank GCA_900632095.1 no 4 0 13 Plasmodium falciparum SD01 PlasmoDB 5833.0 GCA_900632095.1_PfSD01-3 GCA_900632095.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632095.1 +Plasmodium falciparum SN01 GenBank GCA_900632075.1 no 20 0 14 Plasmodium falciparum SN01 PlasmoDB 5833.0 GCA_900632075.1_PfSN01-3 GCA_900632075.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632075.1 +Plasmodium falciparum TG01 GenBank GCA_900632065.1 no 63 0 14 Plasmodium falciparum TG01 PlasmoDB 5833.0 GCA_900632065.1_PfTG01-3 GCA_900632065.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632065.1 Plasmodium fragile strain nilgiri GenBank GCA_000956335.1 yes 0 247 0 Plasmodium fragile strain nilgiri PlasmoDB 5857.0 GCF_000956335.1_Plas_frag_nilgiri_V1 GCA_000956335.1 GCF_000956335.1 True Plasmodium fragile apicomplexans P.fragile (nilgiri 2015) https://genome.ucsc.edu/h/GCF_000956335.1 +Plasmodium gaboni strain G01 GenBank GCA_900097045.1 no 82 0 14 Plasmodium gaboni strain G01 PlasmoDB 647221.0 GCA_900097045.1_PGABG01 GCA_900097045.1 False Plasmodium gaboni apicomplexans P.gaboni (2021) https://genome.ucsc.edu/h/GCA_900097045.1 Plasmodium gaboni strain SY75 GenBank GCA_001602025.1 yes 818 0 14 Plasmodium gaboni strain SY75 PlasmoDB 647221.0 GCF_001602025.1_ASM160202v1 GCA_001602025.1 GCF_001602025.1 True Plasmodium gaboni apicomplexans P.gaboni (SY75 2016) https://genome.ucsc.edu/h/GCF_001602025.1 Plasmodium gallinaceum 8A GenBank GCA_900005855.1 yes 152 0 0 Plasmodium gallinaceum 8A PlasmoDB 5849.0 GCF_900005855.1_PGAL8A GCA_900005855.1 GCF_900005855.1 False Plasmodium gallinaceum apicomplexans P.gallinaceum (8A 2016) https://genome.ucsc.edu/h/GCF_900005855.1 Porcisia hertigi MCOE/PA/1965/C119 INSDC GCA_017918235.1 yes 0 38 36 Porcisia hertigi MCOE/PA/1965/C119 TriTrypDB 2761500.0 GCA_017918235.1_LU_Pher_1.0 GCA_017918235.1 False Porcisia hertigi Porcisia hertigi (C119 2021) https://genome.ucsc.edu/h/GCA_017918235.1 Pediculus humanus USDA INSDC GCA_000006295.1 yes 0 1882 0 Pediculus humanus USDA VectorBase 121224.0 GCF_000006295.1_JCVI_LOUSE_1.0 GCA_000006295.1 GCF_000006295.1 True Pediculus humanus corporis human body louse https://genome.ucsc.edu/h/GCF_000006295.1 +Plasmodium knowlesi strain A1H1 INSDC GCA_900162085.1 no 0 0 14 Plasmodium knowlesi strain A1H1 PlasmoDB 5850.0 GCA_900162085.1_PkA1H1_v1 GCA_900162085.1 False Plasmodium knowlesi apicomplexans P.knowlesi (2017) https://genome.ucsc.edu/h/GCA_900162085.1 +Plasmodium knowlesi strain Malayan Strain Pk1 A GenBank GCA_002140095.1 no 0 28 0 Plasmodium knowlesi strain Malayan Strain Pk1 A PlasmoDB 5850.0 GCA_002140095.1_PKNOHv1 GCA_002140095.1 False Plasmodium knowlesi apicomplexans P.knowlesi (Malayan Strain Pk1 A 2017) https://genome.ucsc.edu/h/GCA_002140095.1 Pichia kudriavzevii strain CBS5147 INSDC GCA_003054405.1 no 0 0 5 Pichia kudriavzevii strain CBS5147 FungiDB 4909.0 GCA_003054405.1_ASM305440v1 GCA_003054405.1 False Pichia kudriavzevii budding yeast P.kudriavzevii (CBS5147 2018) https://genome.ucsc.edu/h/GCA_003054405.1 Pichia kudriavzevii strain CBS573 INSDC GCA_003054445.1 yes 0 0 5 Pichia kudriavzevii strain CBS573 FungiDB 4909.0 GCF_003054445.1_ASM305444v1 GCA_003054445.1 GCF_003054445.1 False Pichia kudriavzevii budding yeast P.kudriavzevii https://genome.ucsc.edu/h/GCF_003054445.1 Pneumocystis sp. macacae isolate P2C INSDC GCA_018127085.1 yes 0 3 16 Pneumocystis sp. 'macacae' P2C FungiDB 2698480.0 GCA_018127085.1_P2C.v1.0 GCA_018127085.1 False Pneumocystis sp. 'macacae' ascomycetes P.sp. 'macacae' (P2C 2021) https://genome.ucsc.edu/h/GCA_018127085.1 Plasmodium malariae UG01 GenBank GCA_900090045.1 yes 47 0 14 Plasmodium malariae UG01 PlasmoDB 5858.0 GCF_900090045.1_PmUG01 GCA_900090045.1 GCF_900090045.1 False Plasmodium malariae Plasmodium malariae (2016) https://genome.ucsc.edu/h/GCF_900090045.1 Pseudoloma neurophilia strain MK1 GenBank GCA_001432165.1 yes 1603 0 0 Pseudoloma neurophilia strain MK1 MicrosporidiaDB 146866.0 GCA_001432165.1_ASM143216v1 GCA_001432165.1 False Pseudoloma neurophilia microsporidians P.neurophilia (MK1 2015) https://genome.ucsc.edu/h/GCA_001432165.1 Pneumocystis oryctolagi CS1 INSDC GCA_017311285.1 yes 0 38 0 Pneumocystis oryctolagi CS1 FungiDB 42067.0 GCA_017311285.1_Pneumocystis_oryctolagi_MERGE_1.1 GCA_017311285.1 False Pneumocystis oryctolagi ascomycetes P.oryctolagi (RABM 2021) https://genome.ucsc.edu/h/GCA_017311285.1 +Plasmodium ovale curtisi GH01 GenBank GCA_900090035.2 yes 638 0 14 Plasmodium ovale curtisi GH01 PlasmoDB 36330.0 GCA_900090035.2_PocGH01 GCA_900090035.2 False Plasmodium ovale malaria parasite P. ovale (2016) https://genome.ucsc.edu/h/GCA_900090035.2 +Plasmodium ovale wallikeri PowCR01 INSDC GCA_900090025.2 no 0 763 14 Plasmodium ovale wallikeri PowCR01 PlasmoDB 36330.0 GCA_900090025.2_PowCR01 GCA_900090025.2 False Plasmodium ovale malaria parasite P. ovale (2016) https://genome.ucsc.edu/h/GCA_900090025.2 Phlebotomus papatasi Israel INSDC GCA_000262795.1 no 0 106826 0 Phlebotomus papatasi Israel VectorBase 29031.0 GCA_000262795.1_Ppap_1.0 GCA_000262795.1 False Phlebotomus papatasi fly P.papatasi (2012) https://genome.ucsc.edu/h/GCA_000262795.1 Phlebotomus papatasi M1 INSDC GCF_024763615.1 yes 0 640 5 Phlebotomus papatasi M1 VectorBase 29031.0 GCF_024763615.1_Ppap_2.1 GCA_024763615.2 GCF_024763615.1 False Phlebotomus papatasi fly P.papatasi (M1 2022) https://genome.ucsc.edu/h/GCF_024763615.1 +Plasmodium praefalciparum strain G01 INSDC GCA_900095595.1 yes 0 39 14 Plasmodium praefalciparum strain G01 PlasmoDB 880534.0 GCA_900095595.1_PPRFG01 GCA_900095595.1 False Plasmodium sp. gorilla clade G1 apicomplexans P.sp. gorilla clade G1 (2018) https://genome.ucsc.edu/h/GCA_900095595.1 Plasmodium reichenowi CDC GenBank GCA_000723685.1 yes 356 0 14 Plasmodium reichenowi CDC PlasmoDB 5854.0 GCF_000723685.1_PREICH001 GCA_000723685.1 GCF_000723685.1 True Plasmodium reichenowi apicomplexans P.reichenowi (CDC 2014) https://genome.ucsc.edu/h/GCF_000723685.1 +Plasmodium reichenowi G01 GenBank GCA_900097025.1 no 34 0 14 Plasmodium reichenowi G01 PlasmoDB 5854.0 GCA_900097025.1_PRG01 GCA_900097025.1 False Plasmodium reichenowi apicomplexans P.reichenowi (2018) https://genome.ucsc.edu/h/GCA_900097025.1 Plasmodium relictum SGS1-like GenBank GCA_900005765.1 yes 460 0 14 Plasmodium relictum SGS1-like PlasmoDB 85471.0 GCF_900005765.1_PRELSG GCA_900005765.1 GCF_900005765.1 False Plasmodium relictum apicomplexans P.relictum (SGS1 2016) https://genome.ucsc.edu/h/GCF_900005765.1 Puccinia sorghi strain RO10H11247 INSDC GCA_001263375.1 yes 0 15715 0 Puccinia sorghi strain RO10H11247 FungiDB 27349.0 GCA_001263375.1_ASM126337v1 GCA_001263375.1 False Puccinia sorghi rust P.sorghi (RO10H11247 2015) https://genome.ucsc.edu/h/GCA_001263375.1 Puccinia striiformis strain 93-210 INSDC GCA_002920065.1 yes 0 492 0 Puccinia striiformis strain 93-210 FungiDB 27350.0 GCA_002920065.1_ASM292006v1 GCA_002920065.1 False Puccinia striiformis rust P.striiformis (93-210 2018) https://genome.ucsc.edu/h/GCA_002920065.1 Puccinia striiformis 93TX-2 INSDC GCA_002920205.1 no 0 561 0 Puccinia striiformis 93TX-2 FungiDB 27350.0 GCA_002920205.1_ASM292020v1 GCA_002920205.1 False Puccinia striiformis rust P.striiformis (93TX-2 2018) https://genome.ucsc.edu/h/GCA_002920205.1 Paecilomyces variotii CBS 101075 INSDC GCF_004022145.1 yes 0 86 0 Paecilomyces variotii CBS 101075 FungiDB 264951.0 GCF_004022145.1_Paevar1 GCA_004022145.1 GCF_004022145.1 True Paecilomyces variotii ascomycetes B.spectabilis https://genome.ucsc.edu/h/GCF_004022145.1 +Plasmodium vinckei Cameroon EL INSDC GCA_903994265.1 no 0 0 14 Plasmodium vinckei Cameroon EL PlasmoDB 5860.0 GCA_903994265.1_PVSEL_v1 GCA_903994265.1 False Plasmodium vinckei apicomplexans P.vinckei (2020) https://genome.ucsc.edu/h/GCA_903994265.1 +Plasmodium vinckei brucechwatti DA INSDC GCA_903994205.1 no 0 0 14 Plasmodium vinckei brucechwatti DA PlasmoDB 119398.0 GCA_903994205.1_PVBDA_v1 GCA_903994205.1 False Plasmodium vinckei brucechwatti apicomplexans P.vinckei brucechwatti (2020) https://genome.ucsc.edu/h/GCA_903994205.1 +Plasmodium vinckei lentum DE INSDC GCA_903994225.1 no 0 0 14 Plasmodium vinckei lentum DE PlasmoDB 138297.0 GCA_903994225.1_PVLDE_v1 GCA_903994225.1 False Plasmodium vinckei lentum apicomplexans P.vinckei lentum (2020) https://genome.ucsc.edu/h/GCA_903994225.1 +Plasmodium vinckei petteri strain CR GenBank GCA_000524515.1 no 0 66 0 Plasmodium vinckei petteri strain CR PlasmoDB 138298.0 GCA_000524515.1_Plas_vinc_pett_CR_V1 GCA_000524515.1 False Plasmodium vinckei petteri apicomplexans P.vinckei petteri (CR 2014) https://genome.ucsc.edu/h/GCA_000524515.1 +Plasmodium vinckei petteri CR 2020 INSDC GCA_903994235.1 no 0 0 14 Plasmodium vinckei petteri CR 2020 PlasmoDB 138298.0 GCA_903994235.1_PVPCR_v1 GCA_903994235.1 False Plasmodium vinckei petteri apicomplexans P.vinckei petteri (2020) https://genome.ucsc.edu/h/GCA_903994235.1 Plasmodium vinckei vinckei CY INSDC GCA_900681995.1 yes 0 0 14 Plasmodium vinckei vinckei CY PlasmoDB 54757.0 GCF_900681995.1_PVVCY_v1 GCA_900681995.1 GCF_900681995.1 True Plasmodium vinckei vinckei apicomplexans P.vinckei vinckei (2019) https://genome.ucsc.edu/h/GCF_900681995.1 Plasmodium vinckei vinckei strain vinckei GenBank GCA_000709005.1 no 0 49 0 Plasmodium vinckei vinckei strain vinckei PlasmoDB 54757.0 GCF_000709005.1_Plas_vinc_vinckei_V1 GCA_000709005.1 GCF_000709005.1 True Plasmodium vinckei vinckei apicomplexans P.vinckei (vinckei 2014) https://genome.ucsc.edu/h/GCF_000709005.1 +Plasmodium vivax P01 GenBank GCA_900093555.2 yes 226 0 14 Plasmodium vivax P01 PlasmoDB 5855.0 GCA_900093555.2_GCA_900093555 GCA_900093555.2 False Plasmodium vivax malaria parasite P. vivax (PvP01 2019) https://genome.ucsc.edu/h/GCA_900093555.2 +Plasmodium vivax PAM INSDC GCA_949152365.1 no 0 28 0 Plasmodium vivax PAM PlasmoDB 5855.0 GCA_949152365.1_PVPAM GCA_949152365.1 False Plasmodium vivax malaria parasite P. vivax (Pv01-19 2023) https://genome.ucsc.edu/h/GCA_949152365.1 +Plasmodium vivax PvSY56 INSDC GCA_003402215.1 no 0 14 0 Plasmodium vivax PvSY56 PlasmoDB 5855.0 GCA_003402215.1_PvSY56_v1 GCA_003402215.1 False Plasmodium vivax malaria parasite P. vivax (PvSY56 2018) https://genome.ucsc.edu/h/GCA_003402215.1 +Plasmodium vivax PvW1 INSDC GCA_914969965.1 no 0 19 0 Plasmodium vivax PvW1 PlasmoDB 5855.0 GCA_914969965.1_5987STDY8548200 GCA_914969965.1 False Plasmodium vivax malaria parasite P. vivax (PvW1 2021) https://genome.ucsc.edu/h/GCA_914969965.1 Pneumocystis wakefieldiae 2A INSDC GCA_017301755.1 yes 0 0 17 Pneumocystis wakefieldiae 2A FungiDB 38082.0 GCA_017301755.1_ASM1730175v1 GCA_017301755.1 False Pneumocystis wakefieldiae ascomycetes P.wakefieldiae (2A 2021) https://genome.ucsc.edu/h/GCA_017301755.1 Plasmodium yoelii yoelii 17X GenBank GCA_900002385.2 yes 0 0 14 Plasmodium yoelii yoelii 17X PlasmoDB 5861.0 GCF_900002385.2_GCA_900002385 GCA_900002385.2 GCF_900002385.2 False Plasmodium yoelii apicomplexans P.yoelii (17X 2019) https://genome.ucsc.edu/h/GCF_900002385.2 +Plasmodium yoelii yoelii 17XNL 2023 INSDC GCA_020844765.3 no 0 0 14 Plasmodium yoelii yoelii 17XNL 2023 PlasmoDB 73239.0 GCA_020844765.3_17XNL_PSU_2 GCA_020844765.3 False Plasmodium yoelii yoelii apicomplexans P.yoelii yoelii (17XNL clone 1.1 2023) https://genome.ucsc.edu/h/GCA_020844765.3 +Plasmodium yoelii yoelii YM INSDC GCA_900002395.1 no 0 181 14 Plasmodium yoelii yoelii YM PlasmoDB 5861.0 GCA_900002395.1_PYYM01 GCA_900002395.1 False Plasmodium yoelii apicomplexans P.yoelii (YM 2014) https://genome.ucsc.edu/h/GCA_900002395.1 Rhipicephalus annulatus KleinGrass INSDC GCA_013436015.1 yes 0 16339 0 Rhipicephalus annulatus KleinGrass VectorBase 34611.0 GCA_013436015.1_TxGen_Rann GCA_013436015.1 False Rhipicephalus annulatus mite/tick R.annulatus (Klein Grass 2020) https://genome.ucsc.edu/h/GCA_013436015.1 Rhizophagus irregularis A1 (DAOM-664342) GenBank GCA_001593125.1 no 11196 0 0 Rhizophagus irregularis A1 (DAOM-664342) FungiDB 588596.0 GCA_001593125.1_ASM159312v1 GCA_001593125.1 False Rhizophagus irregularis glomeromycetes (A1 2016) https://genome.ucsc.edu/h/GCA_001593125.1 Rhizophagus irregularis C2 INSDC GCA_020716745.1 no 0 0 33 Rhizophagus irregularis C2 FungiDB 588596.0 GCA_020716745.1_ASM2071674v1 GCA_020716745.1 False Rhizophagus irregularis glomeromycetes (C2 2021) https://genome.ucsc.edu/h/GCA_020716745.1 @@ -508,6 +591,8 @@ Stomoxys calcitrans USDA INSDC GCA_001015335.1 yes 0 12042 0 Stomoxys calcitrans Sabethes cyaneus ScyaPA1 INSDC GCF_943734655.1 yes 0 5 3 Sabethes cyaneus ScyaPA1 VectorBase 53552.0 GCF_943734655.1_idSabCyanKW18_F2 GCA_943734655.2 GCF_943734655.1 False Sabethes cyaneus mosquito S.cyaneus (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734655.1 Synchytrium endobioticum MB42 INSDC GCA_006535955.1 yes 0 786 0 Synchytrium endobioticum MB42 FungiDB 286115.0 GCA_006535955.1_ASM653595v1 GCA_006535955.1 False Synchytrium endobioticum chytrids & allies (MB42 2019) https://genome.ucsc.edu/h/GCA_006535955.1 Saccharomycodes ludwigii UTAD17 INSDC GCA_900491785.1 yes 0 1360 0 Saccharomycodes ludwigii UTAD17 FungiDB 36035.0 GCA_900491785.1_S_ludwigii_v1 GCA_900491785.1 False Saccharomycodes ludwigii budding yeast S.ludwigii (UTAD17 2018) https://genome.ucsc.edu/h/GCA_900491785.1 +Sarcocystis neurona SN3 GenBank GCA_000727475.1 yes 701 171 0 Sarcocystis neurona SN3 ToxoDB 42890.0 GCA_000727475.1_ASM72747v1 GCA_000727475.1 False Sarcocystis neurona apicomplexans S.neurona (SN3 2014) https://genome.ucsc.edu/h/GCA_000727475.1 +Sarcocystis neurona SO SN1 GenBank GCA_000875885.1 no 0 3066 0 Sarcocystis neurona SO SN1 ToxoDB 42890.0 GCA_000875885.1_ASM87588v1 GCA_000875885.1 False Sarcocystis neurona apicomplexans S.neurona (SN1 2015) https://genome.ucsc.edu/h/GCA_000875885.1 Saccharomyces paradoxus CBS432 INSDC GCA_002079055.1 yes 0 0 16 Saccharomyces paradoxus CBS432 FungiDB 27291.0 GCF_002079055.1_ASM207905v1 GCA_002079055.1 GCF_002079055.1 False Saccharomyces paradoxus budding yeast S.paradoxus https://genome.ucsc.edu/h/GCF_002079055.1 Sarcoptes scabiei Arlian INSDC GCA_000828355.1 yes 0 18859 0 Sarcoptes scabiei Arlian VectorBase 52283.0 GCA_000828355.1_SarSca1.0 GCA_000828355.1 False Sarcoptes scabiei mite/tick S.scabiei (Arlian Lab 2015) https://genome.ucsc.edu/h/GCA_000828355.1 Trichoderma atroviride strain JCM 9410 INSDC GCA_001599035.1 yes 0 23 0 Trichoderma atroviride strain JCM 9410 FungiDB 63577.0 GCA_001599035.1_JCM_9410_assembly_v001 GCA_001599035.1 False Trichoderma atroviride ascomycetes T.atroviride (JCM 9410 2016) https://genome.ucsc.edu/h/GCA_001599035.1 @@ -542,10 +627,13 @@ Trypanosoma cruzi strain Ycl6 INSDC GCA_003594465.1 no 0 6967 0 Trypanosoma cruz Trypanosoma cruzi marinkellei strain B7 GenBank GCA_000300495.1 no 0 16783 0 Trypanosoma cruzi marinkellei strain B7 TriTrypDB 85056.0 GCA_000300495.1_ASM30049v1 GCA_000300495.1 False Trypanosoma cruzi marinkellei Trypanosoma cruzi marinkellei (B7 2012) https://genome.ucsc.edu/h/GCA_000300495.1 Trypanosoma equiperdum OVI INSDC GCA_001457755.2 yes 0 2026 0 Trypanosoma equiperdum OVI TriTrypDB 5694.0 GCF_001457755.1_Trypanosoma_equiperdum_OVI_V2 GCA_001457755.2 GCF_001457755.1 True Trypanosoma equiperdum Trypanosoma equiperdum (OVI 2016) https://genome.ucsc.edu/h/GCF_001457755.1 Trypanosoma evansi strain STIB 805 GenBank GCA_917563935.1 yes 0 0 13 Trypanosoma evansi strain STIB 805 TriTrypDB 5697.0 GCA_917563935.1_Assembly1 GCA_917563935.1 False Trypanosoma evansi Trypanosoma evansi (2021) https://genome.ucsc.edu/h/GCA_917563935.1 +Toxoplasma gondii strain ME49xCTG F1 S27 INSDC GCA_014898695.1 no 0 48 0 Toxoplasma gondii strain ME49xCTG F1 S27 ToxoDB 5811.0 GCA_014898695.1_ASM1489869v1 GCA_014898695.1 False Toxoplasma gondii apicomplexans T.gondii (ME49xCTG S27 2020) https://genome.ucsc.edu/h/GCA_014898695.1 +Toxoplasma gondii RH 2016 GenBank GCA_001593265.1 no 441 0 0 Toxoplasma gondii RH 2016 ToxoDB 383379.0 GCA_001593265.1_ToxRH1.0 GCA_001593265.1 False Toxoplasma gondii RH apicomplexans T.gondii (RH 2016) https://genome.ucsc.edu/h/GCA_001593265.1 Trypanosoma grayi ANR4 GenBank GCA_000691245.1 yes 2871 0 0 Trypanosoma grayi ANR4 TriTrypDB 71804.0 GCF_000691245.1_Tgr_V1 GCA_000691245.1 GCF_000691245.1 True Trypanosoma grayi Trypanosoma grayi (ANR4 2014 kinetoplastids) https://genome.ucsc.edu/h/GCF_000691245.1 Trachipleistophora hominis Unknown strain GenBank GCA_000316135.1 yes 0 310 0 Trachipleistophora hominis Unknown strain MicrosporidiaDB 72359.0 GCA_000316135.1_ASM31613v1 GCA_000316135.1 False Trachipleistophora hominis microsporidians T.hominis (2013) https://genome.ucsc.edu/h/GCA_000316135.1 Triatoma infestans isolate FIOC_28 INSDC GCA_011037195.1 yes 0 14951 0 Triatoma infestans isolate FIOC_28 VectorBase 30076.0 GCA_011037195.1_UVM_Tinf_1.0 GCA_011037195.1 False Triatoma infestans bugs T.infestans (FIOC_28 2020) https://genome.ucsc.edu/h/GCA_011037195.1 Talaromyces marneffei TM4 INSDC GCA_003971505.1 no 0 0 8 Talaromyces marneffei TM4 FungiDB 37727.0 GCA_003971505.1_ASM397150v1 GCA_003971505.1 False Talaromyces marneffei ascomycetes T.marneffei (TM4 2018) https://genome.ucsc.edu/h/GCA_003971505.1 +Trypanosoma melophagium St. Kilda INSDC GCA_022059095.1 yes 0 64 0 Trypanosoma melophagium St. Kilda TriTrypDB 715481.0 GCF_022059095.1_T.mel.1 GCA_022059095.1 GCF_022059095.1 True Trypanosoma melophagium Trypanosoma melophagium (St. Kilda St. Kilda 2022 refseq) https://genome.ucsc.edu/h/GCF_022059095.1 Trichophyton mentagrophytes TIMM 2789 INSDC GCA_003118255.1 yes 0 16543 0 Trichophyton mentagrophytes TIMM 2789 FungiDB 523103.0 GCA_003118255.1_ABySS_70bp_45k_152cov_v1 GCA_003118255.1 False Trichophyton mentagrophytes ascomycetes T.mentagrophytes (TIMM 2789 2018) https://genome.ucsc.edu/h/GCA_003118255.1 Tubulinosema ratisbonensis Franzen INSDC GCA_004000155.1 yes 0 952 0 Tubulinosema ratisbonensis Franzen MicrosporidiaDB 291195.0 GCA_004000155.1_ASM400015v1 GCA_004000155.1 False Tubulinosema ratisbonensis microsporidians T.ratisbonensis (Franzen 2019) https://genome.ucsc.edu/h/GCA_004000155.1 Trichoderma reesei QM6a 2017 INSDC GCA_002006585.1 no 0 0 7 Trichoderma reesei QM6a 2017 FungiDB 431241.0 GCA_002006585.1_ASM200658v1 GCA_002006585.1 False Trichoderma reesei QM6a ascomycetes T.reesei (QM6a 2017) https://genome.ucsc.edu/h/GCA_002006585.1