diff --git a/.prettierignore b/.prettierignore index 156b926..a951ecd 100644 --- a/.prettierignore +++ b/.prettierignore @@ -15,3 +15,6 @@ venv # releases /CHANGELOG.md + +#catalog +/catalog diff --git a/README.md b/README.md index be5cc05..a460d3e 100644 --- a/README.md +++ b/README.md @@ -21,13 +21,13 @@ Create a Python virtual environment and install requirements: ```shell python3 -m venv ./venv source ./venv/bin/activate -pip install -r ./files/requirements.txt +pip install -r ./catalog-build/requirements.txt ``` Then run the script: ```shell -python3 ./files/build-genomes-files.py +python3 ./catalog-build/build-files-from-ncbi.py ``` The environment can be deactivated by running `deactivate`, and re-activated by running `source ./venv/bin/activate` @@ -38,5 +38,5 @@ again. Using the Python environment described above, run the script: ```shell -python3 ./files/build-files-from-ncbi.py +python3 ./catalog-build/build-files-from-ncbi.py ``` diff --git a/app/apis/catalog/brc-analytics-catalog/common/entities.ts b/app/apis/catalog/brc-analytics-catalog/common/entities.ts index f08f78a..e6bf2ce 100644 --- a/app/apis/catalog/brc-analytics-catalog/common/entities.ts +++ b/app/apis/catalog/brc-analytics-catalog/common/entities.ts @@ -26,7 +26,6 @@ export interface BRCDataCatalogGenome { species: string; speciesTaxonomyId: string; strain: string | null; - tags: string[]; ucscBrowserUrl: string | null; } @@ -36,7 +35,6 @@ export interface BRCDataCatalogOrganism { genomes: BRCDataCatalogGenome[]; ncbiTaxonomyId: string; species: string; - tags: string[]; } export interface EntitiesResponse { diff --git a/files/build-catalog.ts b/catalog-build/build-catalog.ts similarity index 92% rename from files/build-catalog.ts rename to catalog-build/build-catalog.ts index c60bbb7..eee0e0a 100644 --- a/files/build-catalog.ts +++ b/catalog-build/build-catalog.ts @@ -6,7 +6,7 @@ import { } from "../app/apis/catalog/brc-analytics-catalog/common/entities"; import { SourceGenome } from "./entities"; -const SOURCE_PATH_GENOMES = "files/source/genomes-from-ncbi.tsv"; +const SOURCE_PATH_GENOMES = "catalog-build/source/genomes-from-ncbi.tsv"; buildCatalog(); @@ -15,10 +15,10 @@ async function buildCatalog(): Promise { const organisms = buildOrganisms(genomes); console.log("Genomes:", genomes.length); - await saveJson("files/out/genomes.json", genomes); + await saveJson("catalog/genomes.json", genomes); console.log("Organisms:", genomes.length); - await saveJson("files/out/organisms.json", organisms); + await saveJson("catalog/organisms.json", organisms); console.log("Done"); } @@ -43,7 +43,6 @@ async function buildGenomes(): Promise { species: row.species, speciesTaxonomyId: row.speciesTaxonomyId, strain: parseStringOrNull(row.strain), - tags: row.CustomTags.split(/,\s*/), ucscBrowserUrl: parseStringOrNull(row.ucscBrowser), }; }); @@ -77,7 +76,6 @@ function buildOrganism( genomes: [...(organism?.genomes ?? []), genome], ncbiTaxonomyId: genome.speciesTaxonomyId, species: genome.species, - tags: Array.from(new Set([...(organism?.tags ?? []), ...genome.tags])), }; } diff --git a/files/build-files-from-ncbi.py b/catalog-build/build-files-from-ncbi.py similarity index 85% rename from files/build-files-from-ncbi.py rename to catalog-build/build-files-from-ncbi.py index 3f6b3df..6e2055a 100644 --- a/files/build-files-from-ncbi.py +++ b/catalog-build/build-files-from-ncbi.py @@ -2,12 +2,17 @@ import requests import urllib.parse import re +import yaml -SOURCE_LIST_URL = "https://docs.google.com/spreadsheets/d/1Gg9sw2Qw765tOx2To53XkTAn-RAMiBtqYrfItlLXXrc/gviz/tq?tqx=out:csv&sheet=Sheet1.csv" +ASSEMBLIES_PATH = "catalog-build/source/assemblies.yml" -ASSEMBLIES_URL = "https://hgdownload.soe.ucsc.edu/hubs/BRC/assemblyList.json" +UCSC_ASSEMBLIES_URL = "https://hgdownload.soe.ucsc.edu/hubs/BRC/assemblyList.json" -GENOMES_OUTPUT_PATH = "files/source/genomes-from-ncbi.tsv" +GENOMES_OUTPUT_PATH = "catalog-build/source/genomes-from-ncbi.tsv" + +def read_assemblies(): + with open(ASSEMBLIES_PATH) as stream: + return pd.DataFrame(yaml.safe_load(stream)["assemblies"]) def get_paginated_ncbi_results(base_url, query_description): page = 1 @@ -93,19 +98,15 @@ def add_gene_model_url(genomes_df: pd.DataFrame): def build_files(): print("Building files") - source_list_df = pd.read_csv(SOURCE_LIST_URL, keep_default_na=False) + source_list_df = read_assemblies() - base_genomes_df = get_genomes_df(source_list_df["Reference"]) + base_genomes_df = get_genomes_df(source_list_df["accession"]) species_df = get_species_df(base_genomes_df["taxonomyId"]) - genomes_with_species_df = ( - base_genomes_df - .merge(source_list_df[["Reference", "CustomTags"]], how="left", left_on="accession", right_on="Reference").drop(columns=["Reference"]) - .merge(species_df, how="left", on="taxonomyId") - ) + genomes_with_species_df = base_genomes_df.merge(species_df, how="left", on="taxonomyId") - assemblies_df = pd.DataFrame(requests.get(ASSEMBLIES_URL).json()["data"])[["ucscBrowser", "genBank", "refSeq"]] + assemblies_df = pd.DataFrame(requests.get(UCSC_ASSEMBLIES_URL).json()["data"])[["ucscBrowser", "genBank", "refSeq"]] gen_bank_merge_df = genomes_with_species_df.merge(assemblies_df, how="left", left_on="accession", right_on="genBank") ref_seq_merge_df = genomes_with_species_df.merge(assemblies_df, how="left", left_on="accession", right_on="refSeq") diff --git a/files/build-genomes-files.py b/catalog-build/build-genomes-files.py similarity index 100% rename from files/build-genomes-files.py rename to catalog-build/build-genomes-files.py diff --git a/files/entities.ts b/catalog-build/entities.ts similarity index 94% rename from files/entities.ts rename to catalog-build/entities.ts index e10a951..ba5bc01 100644 --- a/files/entities.ts +++ b/catalog-build/entities.ts @@ -3,7 +3,6 @@ export interface SourceGenome { annotationStatus: string; chromosomeCount: string; coverage: string; - CustomTags: string; gcPercent: string; geneModelUrl: string; isRef: string; diff --git a/files/requirements.txt b/catalog-build/requirements.txt similarity index 92% rename from files/requirements.txt rename to catalog-build/requirements.txt index 9926474..ca4d9ed 100644 --- a/files/requirements.txt +++ b/catalog-build/requirements.txt @@ -5,6 +5,7 @@ numpy==2.1.0 pandas==2.2.2 python-dateutil==2.9.0.post0 pytz==2024.1 +PyYAML==6.0.2 requests==2.32.3 six==1.16.0 tzdata==2024.1 diff --git a/catalog-build/source/assemblies.yml b/catalog-build/source/assemblies.yml new file mode 100644 index 0000000..ea001f5 --- /dev/null +++ b/catalog-build/source/assemblies.yml @@ -0,0 +1,70 @@ +assemblies: + # plasmodium falciparum + - accession: GCF_000002765.6 + source: plasmodb.org + # plasmodium vivax + - accession: GCF_000002415.2 + ncbi_dataset: true + - accession: GCA_900093555.2 + source: plasmodb.org + # plasmodium yoelii + - accession: GCF_900002385.2 + source: plasmodb.org + # plasmodium vinckei + - accession: GCF_900681995.1 + source: plasmodb.org + # culex p. pallens + - accession: GCF_016801865.2 + source: vectorbase.org + # culex p. quinquefasciatus + - accession: GCF_015732765.1 + source: vectorbase.org + # anopheles gambiae + - accession: GCF_943734735.2 + ncbi_dataset: true + - accession: GCF_000005575.2 + source: vectorbase.org + # toxoplasma gondii + - accession: GCF_000006565.2 + source: toxodb.org + # mycobacterium tuberculosis + - accession: GCF_000195955.2 + # coccidioides posadasii + - accession: GCF_018416015.2 + ncbi_dataset: true + - accession: GCA_000170175.2 + source: fungidb.org + # coccidioides immitis + - accession: GCF_000149335.2 + source: fungidb.org + # trypanosoma cruzi + - accession: GCF_000209065.1 + source: tritrypdb.org + # trypanosoma brucei + - accession: GCF_000002445.2 + source: tritrypdb.org + # leishmania major + - accession: GCF_000002725.2 + source: tritrypdb.org + # leishmania donovani + - accession: GCF_000227135.1 + source: tritrypdb.org + # leishmania braziliensis + # danielle's favorite + - accession: GCF_000002845.2 + source: tritrypdb.org + # covid + - accession: GCF_009858895.2 + # mpox + - accession: GCF_000857045.1 + # aspergillus fumigatus + - accession: GCF_000002655.1 + source: fungidb.org + # candida albicans + - accession: GCF_000182965.3 + source: fungidb.org + # crypococcus neoformans + - accession: GCF_000091045.1 + ncbi_dataset: true + - accession: GCA_000149245.3 + source: fungidb.org diff --git a/catalog-build/source/genomes-from-ncbi.tsv b/catalog-build/source/genomes-from-ncbi.tsv new file mode 100644 index 0000000..47e515d --- /dev/null +++ b/catalog-build/source/genomes-from-ncbi.tsv @@ -0,0 +1,26 @@ +strain taxonomyId accession isRef level chromosomeCount length scaffoldCount scaffoldN50 scaffoldL50 coverage gcPercent annotationStatus pairedAccession species speciesTaxonomyId ucscBrowser genBank refSeq geneModelUrl +H37Rv 83332 GCF_000195955.2 True Complete Genome 1.0 4411532 1 4411532 1 65.5 GCA_000195955.2 Mycobacterium tuberculosis 1773 https://genome.ucsc.edu/h/GCF_000195955.2 GCA_000195955.2 GCF_000195955.2 + 36329 GCF_000002765.6 True Complete Genome 14.0 23292622 14 1687656 5 100.0x 19.5 Full annotation GCA_000002765.3 Plasmodium falciparum 5833 https://genome.ucsc.edu/h/GCF_000002765.6 GCA_000002765.3 GCF_000002765.6 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/765/GCF_000002765.6/genes/GCF_000002765.6_GCA_000002765.ncbiRefSeq.gtf.gz +Friedlin 347515 GCF_000002725.2 True Complete Genome 36.0 32855089 36 1091540 11 59.5 Full annotation GCA_000002725.2 Leishmania major 5664 https://genome.ucsc.edu/h/GCF_000002725.2 GCA_000002725.2 GCF_000002725.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/725/GCF_000002725.2/genes/GCF_000002725.2_ASM272v2.ncbiRefSeq.gtf.gz +17X 5861 GCF_900002385.2 True Complete Genome 14.0 23043114 14 2046250 5 100.0x 21.5 Full annotation GCA_900002385.2 Plasmodium yoelii 5861 https://genome.ucsc.edu/h/GCF_900002385.2 GCA_900002385.2 GCF_900002385.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/900/002/385/GCF_900002385.2/genes/GCF_900002385.2_GCA_900002385.ncbiRefSeq.gtf.gz +Silveira 443226 GCF_018416015.2 True Complete Genome 9.0 28193268 9 8079863 2 475.0x 46.5 Full annotation GCA_018416015.2 Coccidioides posadasii 199306 https://genome.ucsc.edu/h/GCF_018416015.2 GCA_018416015.2 GCF_018416015.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/018/416/015/GCF_018416015.2/genes/GCF_018416015.2_ASM1841601v2.ncbiRefSeq.gtf.gz + 54757 GCF_900681995.1 True Chromosome 14.0 18338688 14 1692345 5 155.0x 23.0 Full annotation GCA_900681995.1 Plasmodium vinckei 5860 https://genome.ucsc.edu/h/GCF_900681995.1 GCA_900681995.1 GCF_900681995.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/900/681/995/GCF_900681995.1/genes/GCF_900681995.1_PVVCY_v1.ncbiRefSeq.gtf.gz +SC5314 237561 GCF_000182965.3 True Chromosome 8.0 14282666 8 2231883 3 700.0x 33.5 Full annotation GCA_000182965.3 Candida albicans 5476 https://genome.ucsc.edu/h/GCF_000182965.3 GCA_000182965.3 GCF_000182965.3 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/182/965/GCF_000182965.3/genes/GCF_000182965.3_ASM18296v3.ncbiRefSeq.gtf.gz +JEC21 214684 GCF_000091045.1 True Chromosome 14.0 19051922 14 1438950 6 48.5 Full annotation GCA_000091045.1 Cryptococcus neoformans 5207 https://genome.ucsc.edu/h/GCF_000091045.1 GCA_000091045.1 GCF_000091045.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/091/045/GCF_000091045.1/genes/GCF_000091045.1_ASM9104v1.ncbiRefSeq.gtf.gz +BPK282A1 5661 GCF_000227135.1 True Chromosome 36.0 32444968 36 1024085 11 59.5 Full annotation GCA_000227135.2 Leishmania donovani 5661 https://genome.ucsc.edu/h/GCF_000227135.1 GCA_000227135.2 GCF_000227135.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/227/135/GCF_000227135.1/genes/GCF_000227135.1_ASM22713v2.ncbiRefSeq.gtf.gz +Af293 330879 GCF_000002655.1 True Chromosome 8.0 29384958 8 3948441 4 50.0 Full annotation GCA_000002655.1 Aspergillus fumigatus 746128 https://genome.ucsc.edu/h/GCF_000002655.1 GCA_000002655.1 GCF_000002655.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/655/GCF_000002655.1/genes/GCF_000002655.1_ASM265v1.ncbiRefSeq.gtf.gz +ME49 508771 GCF_000006565.2 True Chromosome 14.0 65633124 2276 4973582 6 26.5x 52.5 GCA_000006565.2 Toxoplasma gondii 5811 https://genome.ucsc.edu/h/GCF_000006565.2 GCA_000006565.2 GCF_000006565.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/006/565/GCF_000006565.2/genes/GCF_000006565.2_TGA4.ncbiRefSeq.gtf.gz + 185431 GCF_000002445.2 True Chromosome 11.0 26075494 12 2481190 4 46.5 Full annotation GCA_000002445.1 Trypanosoma brucei 5691 https://genome.ucsc.edu/h/GCF_000002445.2 GCA_000002445.1 GCF_000002445.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/445/GCF_000002445.2/genes/GCF_000002445.2_ASM244v1.ncbiRefSeq.gtf.gz + 7165 GCF_943734735.2 True Chromosome 3.0 264451381 190 99149756 2 54.0x 44.5 Full annotation GCA_943734735.2 Anopheles gambiae 7165 https://genome.ucsc.edu/h/GCF_943734735.2 GCA_943734735.2 GCF_943734735.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/735/GCF_943734735.2/genes/GCF_943734735.2_idAnoGambNW_F1_1.ncbiRefSeq.gtf.gz +Salvador I 5855 GCF_000002415.2 True Chromosome 14.0 27007701 2747 1678596 6 42.5 Full annotation GCA_000002415.2 Plasmodium vivax 5855 https://genome.ucsc.edu/h/GCF_000002415.2 GCA_000002415.2 GCF_000002415.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/415/GCF_000002415.2/genes/GCF_000002415.2_ASM241v2.ncbiRefSeq.gtf.gz +JHB 7176 GCF_015732765.1 True Chromosome 3.0 573214445 56 201550677 2 76.0x 37.0 Full annotation GCA_015732765.1 Culex quinquefasciatus 7176 https://genome.ucsc.edu/h/GCF_015732765.1 GCA_015732765.1 GCF_015732765.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/015/732/765/GCF_015732765.1/genes/GCF_015732765.1_VPISU_Cqui_1.0_pri_paternal.ncbiRefSeq.gtf.gz + 42434 GCF_016801865.2 True Chromosome 3.0 566339288 289 186194774 2 250.0x 37.0 Full annotation GCA_016801865.2 Culex pipiens 7175 https://genome.ucsc.edu/h/GCF_016801865.2 GCA_016801865.2 GCF_016801865.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/016/801/865/GCF_016801865.2/genes/GCF_016801865.2_TS_CPP_V2.ncbiRefSeq.gtf.gz +MHOM/BR/75/M2904 420245 GCF_000002845.2 True Chromosome 35.0 32068771 138 992961 11 58.0 GCA_000002845.2 Leishmania braziliensis 5660 https://genome.ucsc.edu/h/GCF_000002845.2 GCA_000002845.2 GCF_000002845.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/845/GCF_000002845.2/genes/GCF_000002845.2_ASM284v2.ncbiRefSeq.gtf.gz +CL Brener 5693 GCF_000209065.1 True Scaffold 89937456 29495 88624 212 51.5 Full annotation GCA_000209065.1 Trypanosoma cruzi 5693 https://genome.ucsc.edu/h/GCF_000209065.1 GCA_000209065.1 GCF_000209065.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/209/065/GCF_000209065.1/genes/GCF_000209065.1_ASM20906v1.ncbiRefSeq.gtf.gz +RS 246410 GCF_000149335.2 True Scaffold 28947925 6 4323945 3 46.0 Full annotation GCA_000149335.2 Coccidioides immitis 5501 https://genome.ucsc.edu/h/GCF_000149335.2 GCA_000149335.2 GCF_000149335.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/149/335/GCF_000149335.2/genes/GCF_000149335.2_ASM14933v2.ncbiRefSeq.gtf.gz + 2697049 GCF_009858895.2 False Complete Genome 1.0 29903 1 29903 1 38.0 GCA_009858895.3 Severe acute respiratory syndrome-related coronavirus 694009 https://genome.ucsc.edu/h/GCF_009858895.2 GCA_009858895.3 GCF_009858895.2 +Zaire-96-I-16 10244 GCF_000857045.1 False Complete Genome 1.0 196858 1 196858 1 33.0 GCA_000857045.1 Monkeypox virus 10244 https://genome.ucsc.edu/h/GCF_000857045.1 GCA_000857045.1 GCF_000857045.1 +H99 235443 GCA_000149245.3 False Chromosome 14.0 18891193 14 1422463 6 11.8x 48.0 GCF_000149245.1 Cryptococcus neoformans 5207 https://genome.ucsc.edu/h/GCF_000149245.1 GCA_000149245.3 GCF_000149245.1 + 5855 GCA_900093555.2 False Chromosome 16.0 29040213 242 1761288 6 100.0x 40.0 Plasmodium vivax 5855 https://genome.ucsc.edu/h/GCA_900093555.2 GCA_900093555.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/093/555/GCA_900093555.2/genes/GCA_900093555.2_GCA_900093555.augustus.gtf.gz +Silveira 443226 GCA_000170175.2 False Scaffold 27583241 54 1220107 8 5.0x 46.5 Coccidioides posadasii 199306 https://genome.ucsc.edu/h/GCA_000170175.2 GCA_000170175.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/170/175/GCA_000170175.2/genes/GCA_000170175.2_CPS2.augustus.gtf.gz +PEST 180454 GCF_000005575.2 False Chromosome 6.0 265011681 8144 12309988 9 44.5 Full annotation GCA_000005575.1 Anopheles gambiae 7165 https://genome.ucsc.edu/h/GCF_000005575.2 GCA_000005575.1 GCF_000005575.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/005/575/GCF_000005575.2/genes/GCF_000005575.2_AgamP3.ncbiRefSeq.gtf.gz diff --git a/files/out/genomes.json b/catalog/genomes.json similarity index 93% rename from files/out/genomes.json rename to catalog/genomes.json index b123379..bc2896a 100644 --- a/files/out/genomes.json +++ b/catalog/genomes.json @@ -16,9 +16,6 @@ "species": "Cryptococcus neoformans", "speciesTaxonomyId": "5207", "strain": "H99", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000149245.1" }, { @@ -38,9 +35,6 @@ "species": "Coccidioides posadasii", "speciesTaxonomyId": "199306", "strain": "Silveira", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000170175.2" }, { @@ -60,9 +54,6 @@ "species": "Plasmodium vivax", "speciesTaxonomyId": "5855", "strain": null, - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_900093555.2" }, { @@ -82,9 +73,6 @@ "species": "Plasmodium vivax", "speciesTaxonomyId": "5855", "strain": "Salvador I", - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002415.2" }, { @@ -104,9 +92,6 @@ "species": "Trypanosoma brucei", "speciesTaxonomyId": "5691", "strain": null, - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002445.2" }, { @@ -126,9 +111,6 @@ "species": "Aspergillus fumigatus", "speciesTaxonomyId": "746128", "strain": "Af293", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002655.1" }, { @@ -148,9 +130,6 @@ "species": "Leishmania major", "speciesTaxonomyId": "5664", "strain": "Friedlin", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002725.2" }, { @@ -170,9 +149,6 @@ "species": "Plasmodium falciparum", "speciesTaxonomyId": "5833", "strain": null, - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002765.6" }, { @@ -192,9 +168,6 @@ "species": "Leishmania braziliensis", "speciesTaxonomyId": "5660", "strain": "MHOM/BR/75/M2904", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002845.2" }, { @@ -214,9 +187,6 @@ "species": "Anopheles gambiae", "speciesTaxonomyId": "7165", "strain": "PEST", - "tags": [ - "vectorbase.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000005575.2" }, { @@ -236,9 +206,6 @@ "species": "Toxoplasma gondii", "speciesTaxonomyId": "5811", "strain": "ME49", - "tags": [ - "toxodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000006565.2" }, { @@ -258,9 +225,6 @@ "species": "Cryptococcus neoformans", "speciesTaxonomyId": "5207", "strain": "JEC21", - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000091045.1" }, { @@ -280,9 +244,6 @@ "species": "Coccidioides immitis", "speciesTaxonomyId": "5501", "strain": "RS", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000149335.2" }, { @@ -302,9 +263,6 @@ "species": "Candida albicans", "speciesTaxonomyId": "5476", "strain": "SC5314", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000182965.3" }, { @@ -324,10 +282,6 @@ "species": "Mycobacterium tuberculosis", "speciesTaxonomyId": "1773", "strain": "H37Rv", - "tags": [ - "TB", - "Outbreak" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000195955.2" }, { @@ -347,9 +301,6 @@ "species": "Trypanosoma cruzi", "speciesTaxonomyId": "5693", "strain": "CL Brener", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000209065.1" }, { @@ -369,9 +320,6 @@ "species": "Leishmania donovani", "speciesTaxonomyId": "5661", "strain": "BPK282A1", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000227135.1" }, { @@ -391,10 +339,6 @@ "species": "Monkeypox virus", "speciesTaxonomyId": "10244", "strain": "Zaire-96-I-16", - "tags": [ - "MPOX", - "Outbreak" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000857045.1" }, { @@ -414,10 +358,6 @@ "species": "Severe acute respiratory syndrome-related coronavirus", "speciesTaxonomyId": "694009", "strain": null, - "tags": [ - "COVID", - "Outbreak" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_009858895.2" }, { @@ -437,9 +377,6 @@ "species": "Culex quinquefasciatus", "speciesTaxonomyId": "7176", "strain": "JHB", - "tags": [ - "vectorbase.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_015732765.1" }, { @@ -459,9 +396,6 @@ "species": "Culex pipiens", "speciesTaxonomyId": "7175", "strain": null, - "tags": [ - "vectorbase.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_016801865.2" }, { @@ -481,9 +415,6 @@ "species": "Coccidioides posadasii", "speciesTaxonomyId": "199306", "strain": "Silveira", - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_018416015.2" }, { @@ -503,9 +434,6 @@ "species": "Plasmodium yoelii", "speciesTaxonomyId": "5861", "strain": "17X", - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_900002385.2" }, { @@ -525,9 +453,6 @@ "species": "Plasmodium vinckei", "speciesTaxonomyId": "5860", "strain": null, - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_900681995.1" }, { @@ -547,9 +472,6 @@ "species": "Anopheles gambiae", "speciesTaxonomyId": "7165", "strain": null, - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_943734735.2" } ] diff --git a/files/out/organisms.json b/catalog/organisms.json similarity index 86% rename from files/out/organisms.json rename to catalog/organisms.json index 4c8ab02..8d607bc 100644 --- a/files/out/organisms.json +++ b/catalog/organisms.json @@ -22,19 +22,11 @@ "species": "Monkeypox virus", "speciesTaxonomyId": "10244", "strain": "Zaire-96-I-16", - "tags": [ - "MPOX", - "Outbreak" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000857045.1" } ], "ncbiTaxonomyId": "10244", - "species": "Monkeypox virus", - "tags": [ - "MPOX", - "Outbreak" - ] + "species": "Monkeypox virus" }, { "assemblyCount": 1, @@ -59,19 +51,11 @@ "species": "Mycobacterium tuberculosis", "speciesTaxonomyId": "1773", "strain": "H37Rv", - "tags": [ - "TB", - "Outbreak" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000195955.2" } ], "ncbiTaxonomyId": "1773", - "species": "Mycobacterium tuberculosis", - "tags": [ - "TB", - "Outbreak" - ] + "species": "Mycobacterium tuberculosis" }, { "assemblyCount": 2, @@ -96,9 +80,6 @@ "species": "Coccidioides posadasii", "speciesTaxonomyId": "199306", "strain": "Silveira", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_000170175.2" }, { @@ -118,18 +99,11 @@ "species": "Coccidioides posadasii", "speciesTaxonomyId": "199306", "strain": "Silveira", - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_018416015.2" } ], "ncbiTaxonomyId": "199306", - "species": "Coccidioides posadasii", - "tags": [ - "fungidb.org", - "NcbiDatasets" - ] + "species": "Coccidioides posadasii" }, { "assemblyCount": 2, @@ -155,9 +129,6 @@ "species": "Cryptococcus neoformans", "speciesTaxonomyId": "5207", "strain": "H99", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000149245.1" }, { @@ -177,18 +148,11 @@ "species": "Cryptococcus neoformans", "speciesTaxonomyId": "5207", "strain": "JEC21", - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000091045.1" } ], "ncbiTaxonomyId": "5207", - "species": "Cryptococcus neoformans", - "tags": [ - "fungidb.org", - "NcbiDatasets" - ] + "species": "Cryptococcus neoformans" }, { "assemblyCount": 1, @@ -213,17 +177,11 @@ "species": "Candida albicans", "speciesTaxonomyId": "5476", "strain": "SC5314", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000182965.3" } ], "ncbiTaxonomyId": "5476", - "species": "Candida albicans", - "tags": [ - "fungidb.org" - ] + "species": "Candida albicans" }, { "assemblyCount": 1, @@ -248,17 +206,11 @@ "species": "Coccidioides immitis", "speciesTaxonomyId": "5501", "strain": "RS", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000149335.2" } ], "ncbiTaxonomyId": "5501", - "species": "Coccidioides immitis", - "tags": [ - "fungidb.org" - ] + "species": "Coccidioides immitis" }, { "assemblyCount": 1, @@ -283,17 +235,11 @@ "species": "Leishmania braziliensis", "speciesTaxonomyId": "5660", "strain": "MHOM/BR/75/M2904", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002845.2" } ], "ncbiTaxonomyId": "5660", - "species": "Leishmania braziliensis", - "tags": [ - "tritrypdb.org" - ] + "species": "Leishmania braziliensis" }, { "assemblyCount": 1, @@ -318,17 +264,11 @@ "species": "Leishmania donovani", "speciesTaxonomyId": "5661", "strain": "BPK282A1", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000227135.1" } ], "ncbiTaxonomyId": "5661", - "species": "Leishmania donovani", - "tags": [ - "tritrypdb.org" - ] + "species": "Leishmania donovani" }, { "assemblyCount": 1, @@ -353,17 +293,11 @@ "species": "Leishmania major", "speciesTaxonomyId": "5664", "strain": "Friedlin", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002725.2" } ], "ncbiTaxonomyId": "5664", - "species": "Leishmania major", - "tags": [ - "tritrypdb.org" - ] + "species": "Leishmania major" }, { "assemblyCount": 1, @@ -388,17 +322,11 @@ "species": "Trypanosoma brucei", "speciesTaxonomyId": "5691", "strain": null, - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002445.2" } ], "ncbiTaxonomyId": "5691", - "species": "Trypanosoma brucei", - "tags": [ - "tritrypdb.org" - ] + "species": "Trypanosoma brucei" }, { "assemblyCount": 1, @@ -423,17 +351,11 @@ "species": "Trypanosoma cruzi", "speciesTaxonomyId": "5693", "strain": "CL Brener", - "tags": [ - "tritrypdb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000209065.1" } ], "ncbiTaxonomyId": "5693", - "species": "Trypanosoma cruzi", - "tags": [ - "tritrypdb.org" - ] + "species": "Trypanosoma cruzi" }, { "assemblyCount": 1, @@ -458,17 +380,11 @@ "species": "Toxoplasma gondii", "speciesTaxonomyId": "5811", "strain": "ME49", - "tags": [ - "toxodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000006565.2" } ], "ncbiTaxonomyId": "5811", - "species": "Toxoplasma gondii", - "tags": [ - "toxodb.org" - ] + "species": "Toxoplasma gondii" }, { "assemblyCount": 1, @@ -493,17 +409,11 @@ "species": "Plasmodium falciparum", "speciesTaxonomyId": "5833", "strain": null, - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002765.6" } ], "ncbiTaxonomyId": "5833", - "species": "Plasmodium falciparum", - "tags": [ - "plasmodb.org" - ] + "species": "Plasmodium falciparum" }, { "assemblyCount": 2, @@ -528,9 +438,6 @@ "species": "Plasmodium vivax", "speciesTaxonomyId": "5855", "strain": null, - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCA_900093555.2" }, { @@ -550,18 +457,11 @@ "species": "Plasmodium vivax", "speciesTaxonomyId": "5855", "strain": "Salvador I", - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002415.2" } ], "ncbiTaxonomyId": "5855", - "species": "Plasmodium vivax", - "tags": [ - "plasmodb.org", - "NcbiDatasets" - ] + "species": "Plasmodium vivax" }, { "assemblyCount": 1, @@ -586,17 +486,11 @@ "species": "Plasmodium vinckei", "speciesTaxonomyId": "5860", "strain": null, - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_900681995.1" } ], "ncbiTaxonomyId": "5860", - "species": "Plasmodium vinckei", - "tags": [ - "plasmodb.org" - ] + "species": "Plasmodium vinckei" }, { "assemblyCount": 1, @@ -621,17 +515,11 @@ "species": "Plasmodium yoelii", "speciesTaxonomyId": "5861", "strain": "17X", - "tags": [ - "plasmodb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_900002385.2" } ], "ncbiTaxonomyId": "5861", - "species": "Plasmodium yoelii", - "tags": [ - "plasmodb.org" - ] + "species": "Plasmodium yoelii" }, { "assemblyCount": 1, @@ -656,19 +544,11 @@ "species": "Severe acute respiratory syndrome-related coronavirus", "speciesTaxonomyId": "694009", "strain": null, - "tags": [ - "COVID", - "Outbreak" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_009858895.2" } ], "ncbiTaxonomyId": "694009", - "species": "Severe acute respiratory syndrome-related coronavirus", - "tags": [ - "COVID", - "Outbreak" - ] + "species": "Severe acute respiratory syndrome-related coronavirus" }, { "assemblyCount": 2, @@ -694,9 +574,6 @@ "species": "Anopheles gambiae", "speciesTaxonomyId": "7165", "strain": "PEST", - "tags": [ - "vectorbase.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000005575.2" }, { @@ -716,18 +593,11 @@ "species": "Anopheles gambiae", "speciesTaxonomyId": "7165", "strain": null, - "tags": [ - "NcbiDatasets" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_943734735.2" } ], "ncbiTaxonomyId": "7165", - "species": "Anopheles gambiae", - "tags": [ - "vectorbase.org", - "NcbiDatasets" - ] + "species": "Anopheles gambiae" }, { "assemblyCount": 1, @@ -752,17 +622,11 @@ "species": "Culex pipiens", "speciesTaxonomyId": "7175", "strain": null, - "tags": [ - "vectorbase.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_016801865.2" } ], "ncbiTaxonomyId": "7175", - "species": "Culex pipiens", - "tags": [ - "vectorbase.org" - ] + "species": "Culex pipiens" }, { "assemblyCount": 1, @@ -787,17 +651,11 @@ "species": "Culex quinquefasciatus", "speciesTaxonomyId": "7176", "strain": "JHB", - "tags": [ - "vectorbase.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_015732765.1" } ], "ncbiTaxonomyId": "7176", - "species": "Culex quinquefasciatus", - "tags": [ - "vectorbase.org" - ] + "species": "Culex quinquefasciatus" }, { "assemblyCount": 1, @@ -822,16 +680,10 @@ "species": "Aspergillus fumigatus", "speciesTaxonomyId": "746128", "strain": "Af293", - "tags": [ - "fungidb.org" - ], "ucscBrowserUrl": "https://genome.ucsc.edu/h/GCF_000002655.1" } ], "ncbiTaxonomyId": "746128", - "species": "Aspergillus fumigatus", - "tags": [ - "fungidb.org" - ] + "species": "Aspergillus fumigatus" } ] diff --git a/files/source/genomes-from-ncbi.tsv b/files/source/genomes-from-ncbi.tsv deleted file mode 100644 index e7eb81d..0000000 --- a/files/source/genomes-from-ncbi.tsv +++ /dev/null @@ -1,26 +0,0 @@ -strain taxonomyId accession isRef level chromosomeCount length scaffoldCount scaffoldN50 scaffoldL50 coverage gcPercent annotationStatus pairedAccession CustomTags species speciesTaxonomyId ucscBrowser genBank refSeq geneModelUrl -H37Rv 83332 GCF_000195955.2 True Complete Genome 1.0 4411532 1 4411532 1 65.5 GCA_000195955.2 TB, Outbreak Mycobacterium tuberculosis 1773 https://genome.ucsc.edu/h/GCF_000195955.2 GCA_000195955.2 GCF_000195955.2 - 36329 GCF_000002765.6 True Complete Genome 14.0 23292622 14 1687656 5 100.0x 19.5 Full annotation GCA_000002765.3 plasmodb.org Plasmodium falciparum 5833 https://genome.ucsc.edu/h/GCF_000002765.6 GCA_000002765.3 GCF_000002765.6 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/765/GCF_000002765.6/genes/GCF_000002765.6_GCA_000002765.ncbiRefSeq.gtf.gz -Friedlin 347515 GCF_000002725.2 True Complete Genome 36.0 32855089 36 1091540 11 59.5 Full annotation GCA_000002725.2 tritrypdb.org Leishmania major 5664 https://genome.ucsc.edu/h/GCF_000002725.2 GCA_000002725.2 GCF_000002725.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/725/GCF_000002725.2/genes/GCF_000002725.2_ASM272v2.ncbiRefSeq.gtf.gz -17X 5861 GCF_900002385.2 True Complete Genome 14.0 23043114 14 2046250 5 100.0x 21.5 Full annotation GCA_900002385.2 plasmodb.org Plasmodium yoelii 5861 https://genome.ucsc.edu/h/GCF_900002385.2 GCA_900002385.2 GCF_900002385.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/900/002/385/GCF_900002385.2/genes/GCF_900002385.2_GCA_900002385.ncbiRefSeq.gtf.gz -Silveira 443226 GCF_018416015.2 True Complete Genome 9.0 28193268 9 8079863 2 475.0x 46.5 Full annotation GCA_018416015.2 NcbiDatasets Coccidioides posadasii 199306 https://genome.ucsc.edu/h/GCF_018416015.2 GCA_018416015.2 GCF_018416015.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/018/416/015/GCF_018416015.2/genes/GCF_018416015.2_ASM1841601v2.ncbiRefSeq.gtf.gz - 54757 GCF_900681995.1 True Chromosome 14.0 18338688 14 1692345 5 155.0x 23.0 Full annotation GCA_900681995.1 plasmodb.org Plasmodium vinckei 5860 https://genome.ucsc.edu/h/GCF_900681995.1 GCA_900681995.1 GCF_900681995.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/900/681/995/GCF_900681995.1/genes/GCF_900681995.1_PVVCY_v1.ncbiRefSeq.gtf.gz -SC5314 237561 GCF_000182965.3 True Chromosome 8.0 14282666 8 2231883 3 700.0x 33.5 Full annotation GCA_000182965.3 fungidb.org Candida albicans 5476 https://genome.ucsc.edu/h/GCF_000182965.3 GCA_000182965.3 GCF_000182965.3 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/182/965/GCF_000182965.3/genes/GCF_000182965.3_ASM18296v3.ncbiRefSeq.gtf.gz -JEC21 214684 GCF_000091045.1 True Chromosome 14.0 19051922 14 1438950 6 48.5 Full annotation GCA_000091045.1 NcbiDatasets Cryptococcus neoformans 5207 https://genome.ucsc.edu/h/GCF_000091045.1 GCA_000091045.1 GCF_000091045.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/091/045/GCF_000091045.1/genes/GCF_000091045.1_ASM9104v1.ncbiRefSeq.gtf.gz -BPK282A1 5661 GCF_000227135.1 True Chromosome 36.0 32444968 36 1024085 11 59.5 Full annotation GCA_000227135.2 tritrypdb.org Leishmania donovani 5661 https://genome.ucsc.edu/h/GCF_000227135.1 GCA_000227135.2 GCF_000227135.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/227/135/GCF_000227135.1/genes/GCF_000227135.1_ASM22713v2.ncbiRefSeq.gtf.gz -Af293 330879 GCF_000002655.1 True Chromosome 8.0 29384958 8 3948441 4 50.0 Full annotation GCA_000002655.1 fungidb.org Aspergillus fumigatus 746128 https://genome.ucsc.edu/h/GCF_000002655.1 GCA_000002655.1 GCF_000002655.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/655/GCF_000002655.1/genes/GCF_000002655.1_ASM265v1.ncbiRefSeq.gtf.gz -ME49 508771 GCF_000006565.2 True Chromosome 14.0 65633124 2276 4973582 6 26.5x 52.5 GCA_000006565.2 toxodb.org Toxoplasma gondii 5811 https://genome.ucsc.edu/h/GCF_000006565.2 GCA_000006565.2 GCF_000006565.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/006/565/GCF_000006565.2/genes/GCF_000006565.2_TGA4.ncbiRefSeq.gtf.gz - 185431 GCF_000002445.2 True Chromosome 11.0 26075494 12 2481190 4 46.5 Full annotation GCA_000002445.1 tritrypdb.org Trypanosoma brucei 5691 https://genome.ucsc.edu/h/GCF_000002445.2 GCA_000002445.1 GCF_000002445.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/445/GCF_000002445.2/genes/GCF_000002445.2_ASM244v1.ncbiRefSeq.gtf.gz - 7165 GCF_943734735.2 True Chromosome 3.0 264451381 190 99149756 2 54.0x 44.5 Full annotation GCA_943734735.2 NcbiDatasets Anopheles gambiae 7165 https://genome.ucsc.edu/h/GCF_943734735.2 GCA_943734735.2 GCF_943734735.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/735/GCF_943734735.2/genes/GCF_943734735.2_idAnoGambNW_F1_1.ncbiRefSeq.gtf.gz -Salvador I 5855 GCF_000002415.2 True Chromosome 14.0 27007701 2747 1678596 6 42.5 Full annotation GCA_000002415.2 NcbiDatasets Plasmodium vivax 5855 https://genome.ucsc.edu/h/GCF_000002415.2 GCA_000002415.2 GCF_000002415.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/415/GCF_000002415.2/genes/GCF_000002415.2_ASM241v2.ncbiRefSeq.gtf.gz -JHB 7176 GCF_015732765.1 True Chromosome 3.0 573214445 56 201550677 2 76.0x 37.0 Full annotation GCA_015732765.1 vectorbase.org Culex quinquefasciatus 7176 https://genome.ucsc.edu/h/GCF_015732765.1 GCA_015732765.1 GCF_015732765.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/015/732/765/GCF_015732765.1/genes/GCF_015732765.1_VPISU_Cqui_1.0_pri_paternal.ncbiRefSeq.gtf.gz - 42434 GCF_016801865.2 True Chromosome 3.0 566339288 289 186194774 2 250.0x 37.0 Full annotation GCA_016801865.2 vectorbase.org Culex pipiens 7175 https://genome.ucsc.edu/h/GCF_016801865.2 GCA_016801865.2 GCF_016801865.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/016/801/865/GCF_016801865.2/genes/GCF_016801865.2_TS_CPP_V2.ncbiRefSeq.gtf.gz -MHOM/BR/75/M2904 420245 GCF_000002845.2 True Chromosome 35.0 32068771 138 992961 11 58.0 GCA_000002845.2 tritrypdb.org Leishmania braziliensis 5660 https://genome.ucsc.edu/h/GCF_000002845.2 GCA_000002845.2 GCF_000002845.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/002/845/GCF_000002845.2/genes/GCF_000002845.2_ASM284v2.ncbiRefSeq.gtf.gz -CL Brener 5693 GCF_000209065.1 True Scaffold 89937456 29495 88624 212 51.5 Full annotation GCA_000209065.1 tritrypdb.org Trypanosoma cruzi 5693 https://genome.ucsc.edu/h/GCF_000209065.1 GCA_000209065.1 GCF_000209065.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/209/065/GCF_000209065.1/genes/GCF_000209065.1_ASM20906v1.ncbiRefSeq.gtf.gz -RS 246410 GCF_000149335.2 True Scaffold 28947925 6 4323945 3 46.0 Full annotation GCA_000149335.2 fungidb.org Coccidioides immitis 5501 https://genome.ucsc.edu/h/GCF_000149335.2 GCA_000149335.2 GCF_000149335.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/149/335/GCF_000149335.2/genes/GCF_000149335.2_ASM14933v2.ncbiRefSeq.gtf.gz - 2697049 GCF_009858895.2 False Complete Genome 1.0 29903 1 29903 1 38.0 GCA_009858895.3 COVID, Outbreak Severe acute respiratory syndrome-related coronavirus 694009 https://genome.ucsc.edu/h/GCF_009858895.2 GCA_009858895.3 GCF_009858895.2 -Zaire-96-I-16 10244 GCF_000857045.1 False Complete Genome 1.0 196858 1 196858 1 33.0 GCA_000857045.1 MPOX, Outbreak Monkeypox virus 10244 https://genome.ucsc.edu/h/GCF_000857045.1 GCA_000857045.1 GCF_000857045.1 -H99 235443 GCA_000149245.3 False Chromosome 14.0 18891193 14 1422463 6 11.8x 48.0 GCF_000149245.1 fungidb.org Cryptococcus neoformans 5207 https://genome.ucsc.edu/h/GCF_000149245.1 GCA_000149245.3 GCF_000149245.1 - 5855 GCA_900093555.2 False Chromosome 16.0 29040213 242 1761288 6 100.0x 40.0 plasmodb.org Plasmodium vivax 5855 https://genome.ucsc.edu/h/GCA_900093555.2 GCA_900093555.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/093/555/GCA_900093555.2/genes/GCA_900093555.2_GCA_900093555.augustus.gtf.gz -Silveira 443226 GCA_000170175.2 False Scaffold 27583241 54 1220107 8 5.0x 46.5 fungidb.org Coccidioides posadasii 199306 https://genome.ucsc.edu/h/GCA_000170175.2 GCA_000170175.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/170/175/GCA_000170175.2/genes/GCA_000170175.2_CPS2.augustus.gtf.gz -PEST 180454 GCF_000005575.2 False Chromosome 6.0 265011681 8144 12309988 9 44.5 Full annotation GCA_000005575.1 vectorbase.org Anopheles gambiae 7165 https://genome.ucsc.edu/h/GCF_000005575.2 GCA_000005575.1 GCF_000005575.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/005/575/GCF_000005575.2/genes/GCF_000005575.2_AgamP3.ncbiRefSeq.gtf.gz diff --git a/files/source/genomes.tsv b/files/source/genomes.tsv deleted file mode 100644 index 3796fa0..0000000 --- a/files/source/genomes.tsv +++ /dev/null @@ -1,745 +0,0 @@ -Organism Genome Source Genome Version/Assembly ID Is Reference Strain Contigs Supercontigs Chromosomes Species Strain VEuPathDB Project taxId asmId genBank refSeq identical sciName comName ucscBrowser geneModelUrl -Edhazardia aedis USNM 41457 GenBank GCA_000230595.3 yes 1429 0 0 Edhazardia aedis USNM 41457 MicrosporidiaDB 1003232 GCA_000230595.3_Edha_aedis_V4b GCA_000230595.3 False Edhazardia aedis USNM 41457 microsporidians E.aedis (USNM 41457 2015) https://genome.ucsc.edu/h/GCA_000230595.3 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/230/595/GCA_000230595.3/genes/GCA_000230595.3_Edha_aedis_V4b.augustus.gtf.gz -Kluyveromyces marxianus DMKU3-1042 INSDC GCF_001417885.1 yes 0 0 8 Kluyveromyces marxianus DMKU3-1042 FungiDB 1003335 GCF_001417885.1_Kmar_1.0 GCA_001417885.1 GCF_001417885.1 True Kluyveromyces marxianus DMKU3-1042 budding yeast K.marxianus (DMKU3-1042 2014 refseq) https://genome.ucsc.edu/h/GCF_001417885.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/001/417/885/GCF_001417885.1/genes/GCF_001417885.1_Kmar_1.0.ncbiRefSeq.gtf.gz -Aspergillus luchuensis IFO 4308 GenBank GCA_000239835.2 no 1016 146 0 Aspergillus luchuensis IFO 4308 FungiDB 1033177 GCA_000239835.2_Akaw_assembly01 GCA_000239835.2 False Aspergillus luchuensis IFO 4308 ascomycetes A.luchuensis IFO 4308 (IFO4308 2011) https://genome.ucsc.edu/h/GCA_000239835.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/239/835/GCA_000239835.2/genes/GCA_000239835.2_Akaw_assembly01.augustus.gtf.gz -Epichloe glyceriae E277 INSDC GCA_000225285.2 yes 3076 0 0 Epichloe glyceriae E277 FungiDB 1035635 GCA_000225285.2_EpiGly_1.0 GCA_000225285.2 False Epichloe glyceriae E277 ascomycetes E.glyceriae (E277 2011) https://genome.ucsc.edu/h/GCA_000225285.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/225/285/GCA_000225285.2/genes/GCA_000225285.2_EpiGly_1.0.augustus.gtf.gz -Aspergillus versicolor CBS 583.65 GenBank GCA_001890125.1 yes 0 51 0 Aspergillus versicolor CBS 583.65 FungiDB 1036611 GCF_001890125.1_Aspve1 GCA_001890125.1 GCF_001890125.1 True Aspergillus versicolor CBS 583.65 ascomycetes A.versicolor CBS 583.65 https://genome.ucsc.edu/h/GCF_001890125.1 -Aspergillus sydowii CBS 593.65 GenBank GCA_001890705.1 yes 0 97 0 Aspergillus sydowii CBS 593.65 FungiDB 1036612 GCF_001890705.1_Aspsy1 GCA_001890705.1 GCF_001890705.1 True Aspergillus sydowii CBS 593.65 ascomycetes A.sydowii CBS 593.65 https://genome.ucsc.edu/h/GCF_001890705.1 -Nosema apis BRL 01 INSDC GCA_000447185.1 yes 0 554 0 Nosema apis BRL 01 MicrosporidiaDB 1037528 GCA_000447185.1_NapisBRLv01 GCA_000447185.1 False Vairimorpha apis BRL 01 microsporidians V.apis (BRL 01 2013) https://genome.ucsc.edu/h/GCA_000447185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/447/185/GCA_000447185.1/genes/GCA_000447185.1_NapisBRLv01.augustus.gtf.gz -Trypanosoma vivax Y486 GenBank GCA_000227375.1 yes 8279 0 11 Trypanosoma vivax Y486 TriTrypDB 1055687 GCA_000227375.1_ASM22737v1 GCA_000227375.1 False Trypanosoma vivax Y486 Trypanosoma vivax (Y486 2011) https://genome.ucsc.edu/h/GCA_000227375.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/227/375/GCA_000227375.1/genes/GCA_000227375.1_ASM22737v1.augustus.gtf.gz -Trypanosoma congolense IL3000 GenBank GCA_000227395.2 yes 2828 0 11 Trypanosoma congolense IL3000 TriTrypDB 1068625 GCA_000227395.2_ASM22739v2 GCA_000227395.2 False Trypanosoma congolense IL3000 Trypanosoma congolense (IL3000 2011) https://genome.ucsc.edu/h/GCA_000227395.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/227/395/GCA_000227395.2/genes/GCA_000227395.2_ASM22739v2.augustus.gtf.gz -Pneumocystis murina B123 INSDC GCA_000349005.2 yes 0 20 0 Pneumocystis murina B123 FungiDB 1069680 GCF_000349005.2_Pneumo_murina_B123_V4 GCA_000349005.2 GCF_000349005.2 True Pneumocystis murina B123 ascomycetes P.murina B123 https://genome.ucsc.edu/h/GCF_000349005.2 -Aspergillus wentii DTO 134E9 GenBank GCA_001890725.1 yes 0 27 0 Aspergillus wentii DTO 134E9 FungiDB 1073089 GCF_001890725.1_Aspwe1 GCA_001890725.1 GCF_001890725.1 True Aspergillus wentii DTO 134E9 ascomycetes A.wentii DTO 134E9 https://genome.ucsc.edu/h/GCF_001890725.1 -Penicilliopsis zonata CBS 506.65 GenBank GCA_001890105.1 yes 0 246 0 Penicilliopsis zonata CBS 506.65 FungiDB 1073090 GCF_001890105.1_Aspzo1 GCA_001890105.1 GCF_001890105.1 True Penicilliopsis zonata CBS 506.65 ascomycetes P.zonata CBS 506.65 https://genome.ucsc.edu/h/GCF_001890105.1 -Toxoplasma gondii ARI GenBank GCA_000250965.2 no 0 2723 0 Toxoplasma gondii ARI ToxoDB 1074872 GCA_000250965.2_TGARI_v2 GCA_000250965.2 False Toxoplasma gondii ARI apicomplexans T.gondii (ARI 2016) https://genome.ucsc.edu/h/GCA_000250965.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/250/965/GCA_000250965.2/genes/GCA_000250965.2_TGARI_v2.augustus.gtf.gz -Toxoplasma gondii COUG GenBank GCA_000338675.2 no 4075 105 0 Toxoplasma gondii COUG ToxoDB 1074873 GCA_000338675.2_TGCOUG_v2 GCA_000338675.2 False Toxoplasma gondii COUG apicomplexans T.gondii (COUG 2017) https://genome.ucsc.edu/h/GCA_000338675.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/338/675/GCA_000338675.2/genes/GCA_000338675.2_TGCOUG_v2.augustus.gtf.gz -Entamoeba nuttalli P19 GenBank GCF_000257125.1 yes 0 5233 0 Entamoeba nuttalli P19 AmoebaDB 1076696 GCA_000257125.1_ENU1_v1 GCA_000257125.1 GCF_000257125.1 True Entamoeba nuttalli P19 E.nuttalli (P19 2012) https://genome.ucsc.edu/h/GCA_000257125.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/257/125/GCF_000257125.1/genes/GCF_000257125.1_ENU1_v1.augustus.gtf.gz -Pyronema omphalodes CBS 100304 INSDC GCA_024516155.1 yes 0 260 0 Pyronema omphalodes CBS 100304 FungiDB 337075 GCA_024516155.1_Pyrom1 GCA_024516155.1 False Pyronema omphalodes ascomycetes P.omphalodes (CBS 144459 2022) https://genome.ucsc.edu/h/GCA_024516155.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/024/516/155/GCA_024516155.1/genes/GCA_024516155.1_Pyrom1.augustus.gtf.gz -Fusarium odoratissimum NRRL 54006 GenBank GCA_000260195.2 no 0 418 0 Fusarium odoratissimum NRRL 54006 FungiDB 1089451 GCF_000260195.1_FO_II5_V1 GCA_000260195.2 GCF_000260195.1 True Fusarium odoratissimum NRRL 54006 ascomycetes F.odoratissimum NRRL 54006 https://genome.ucsc.edu/h/GCF_000260195.1 -Fusarium oxysporum f. sp. melonis 26406 GenBank GCA_000260495.2 no 0 1146 0 Fusarium oxysporum f. sp. melonis 26406 FungiDB 1089452 GCA_000260495.2_FO_melonis_V1 GCA_000260495.2 False Fusarium oxysporum f. sp. melonis 26406 ascomycetes F.oxysporum f. sp. melonis (26406 2014) https://genome.ucsc.edu/h/GCA_000260495.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/260/495/GCA_000260495.2/genes/GCA_000260495.2_FO_melonis_V1.augustus.gtf.gz -Phytophthora sojae strain P6497 GenBank GCA_000149755.2 yes 0 82 0 Phytophthora sojae strain P6497 FungiDB 67593 GCF_000149755.1_P.sojae_V3.0 GCA_000149755.2 GCF_000149755.1 True Phytophthora sojae downy mildews (P6497 2011) https://genome.ucsc.edu/h/GCF_000149755.1 -Taphrina deformans PYCC 5710 INSDC GCA_000312925.2 yes 0 394 0 Taphrina deformans PYCC 5710 FungiDB 1097556 GCA_000312925.2_ASM31292v2 GCA_000312925.2 False Taphrina deformans PYCC 5710 peach leaf curl fungus (PYCC 5710 2013) https://genome.ucsc.edu/h/GCA_000312925.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/312/925/GCA_000312925.2/genes/GCA_000312925.2_ASM31292v2.augustus.gtf.gz -Claviceps purpurea 20.1 INSDC GCA_000347355.1 yes 0 191 0 Claviceps purpurea 20.1 FungiDB 1111077 GCA_000347355.1_ASM34735v1 GCA_000347355.1 False Claviceps purpurea 20.1 ergot fungus (20.1 2012) https://genome.ucsc.edu/h/GCA_000347355.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/347/355/GCA_000347355.1/genes/GCA_000347355.1_ASM34735v1.augustus.gtf.gz -Plasmodium cynomolgi strain B GenBank GCA_000321355.1 no 0 1649 14 Plasmodium cynomolgi strain B PlasmoDB 1120755 GCF_000321355.1_PcynB_1.0 GCA_000321355.1 GCF_000321355.1 True Plasmodium cynomolgi strain B apicomplexans P.cynomolgi strain (B 2012) https://genome.ucsc.edu/h/GCF_000321355.1 -Macrophomina phaseolina MS6 INSDC GCA_000302655.1 yes 0 1506 0 Macrophomina phaseolina MS6 FungiDB 1126212 GCA_000302655.1_MphMS6_1.0 GCA_000302655.1 False Macrophomina phaseolina MS6 charcoal rot (MS6 2012) https://genome.ucsc.edu/h/GCA_000302655.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/302/655/GCA_000302655.1/genes/GCA_000302655.1_MphMS6_1.0.augustus.gtf.gz -Toxoplasma gondii GAB2-2007-GAL-DOM2 GenBank GCA_000325525.2 no 0 2481 0 Toxoplasma gondii GAB2-2007-GAL-DOM2 ToxoDB 1130820 GCA_000325525.2_TGGABGALDOM2_v2.1 GCA_000325525.2 False Toxoplasma gondii GAB2-2007-GAL-DOM2 apicomplexans T.gondii (GAB2-2007-GAL-DOM2 2014) https://genome.ucsc.edu/h/GCA_000325525.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/325/525/GCA_000325525.2/genes/GCA_000325525.2_TGGABGALDOM2_v2.1.augustus.gtf.gz -Toxoplasma gondii TgCatPRC2 GenBank GCA_000256725.2 no 0 3060 0 Toxoplasma gondii TgCatPRC2 ToxoDB 1130821 GCA_000256725.2_TGCATPRC2_v2 GCA_000256725.2 False Toxoplasma gondii TgCatPRC2 apicomplexans T.gondii (TgCatPRC2 2016) https://genome.ucsc.edu/h/GCA_000256725.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/256/725/GCA_000256725.2/genes/GCA_000256725.2_TGCATPRC2_v2.augustus.gtf.gz -Babesia microti strain RI GenBank GCA_000691945.2 yes 0 0 4 Babesia microti strain RI PiroplasmaDB 1133968 GCF_000691945.2_ASM69194v2 GCA_000691945.2 GCF_000691945.2 False Babesia microti strain RI apicomplexans B.microti strain (RI 2015) https://genome.ucsc.edu/h/GCF_000691945.2 -Pleurotus ostreatus PC15 INSDC GCA_000697685.1 yes 0 12 0 Pleurotus ostreatus PC15 FungiDB 1137138 GCA_000697685.1_PleosPC15_2 GCA_000697685.1 False Pleurotus ostreatus PC15 oyster mushroom (PC15 2014) https://genome.ucsc.edu/h/GCA_000697685.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/697/685/GCA_000697685.1/genes/GCA_000697685.1_PleosPC15_2.augustus.gtf.gz -Pleurotus ostreatus PC9 INSDC GCF_014466165.1 no 0 16 0 Pleurotus ostreatus PC9 FungiDB 5322 GCF_014466165.1_ASM1446616v1 GCA_014466165.1 GCF_014466165.1 False Pleurotus ostreatus oyster mushroom https://genome.ucsc.edu/h/GCF_014466165.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/014/466/165/GCF_014466165.1/genes/GCF_014466165.1_ASM1446616v1.ncbiRefSeq.gtf.gz -Aspergillus luchuensis CBS 106.47 GenBank GCA_001890685.1 yes 0 100 0 Aspergillus luchuensis CBS 106.47 FungiDB 1137211 GCA_001890685.1_Aspfo1 GCA_001890685.1 False Aspergillus luchuensis CBS 106.47 ascomycetes A.luchuensis (CBS 106.47 2016) https://genome.ucsc.edu/h/GCA_001890685.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/890/685/GCA_001890685.1/genes/GCA_001890685.1_Aspfo1.augustus.gtf.gz -Anncaliia algerae Undeen GenBank GCA_000313815.1 no 8427 0 0 Anncaliia algerae Undeen MicrosporidiaDB 723287 GCA_000313815.1_ASM31381v1 GCA_000313815.1 False Anncaliia algerae microsporidians A.algerae (Undeen 2012) https://genome.ucsc.edu/h/GCA_000313815.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/313/815/GCA_000313815.1/genes/GCA_000313815.1_ASM31381v1.augustus.gtf.gz -Saprolegnia diclina VS20 GenBank GCA_000281045.1 yes 0 390 0 Saprolegnia diclina VS20 FungiDB 1156394 GCF_000281045.1_Sap_diclina_VS20_V1 GCA_000281045.1 GCF_000281045.1 True Saprolegnia diclina VS20 oomycetes (VS20 2013) https://genome.ucsc.edu/h/GCF_000281045.1 -Hortaea werneckii EXF-2000 INSDC GCA_002127715.1 yes 0 628 0 Hortaea werneckii EXF-2000 FungiDB 1157616 GCA_002127715.1_HwerPB1 GCA_002127715.1 False Hortaea werneckii EXF-2000 ascomycetes H.werneckii (EXF-2000 2017) https://genome.ucsc.edu/h/GCA_002127715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/127/715/GCA_002127715.1/genes/GCA_002127715.1_HwerPB1.augustus.gtf.gz -Aspergillus glaucus CBS 516.65 GenBank GCA_001890805.1 yes 0 82 0 Aspergillus glaucus CBS 516.65 FungiDB 1160497 GCF_001890805.1_Aspgl1 GCA_001890805.1 GCF_001890805.1 True Aspergillus glaucus CBS 516.65 ascomycetes A.glaucus CBS 516.65 https://genome.ucsc.edu/h/GCF_001890805.1 -Chromera velia CCMP2878 GenBank GCA_018398765.1 yes 0 5963 0 Chromera velia CCMP2878 CryptoDB 1169474 GCA_018398765.1_ASM1839876v1 GCA_018398765.1 False Chromera velia CCMP2878 C.velia (CCMP2878 2021) https://genome.ucsc.edu/h/GCA_018398765.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/018/398/765/GCA_018398765.1/genes/GCA_018398765.1_ASM1839876v1.augustus.gtf.gz -Vitrella brassicaformis CCMP3155 GenBank GCA_001179505.1 yes 0 1064 0 Vitrella brassicaformis CCMP3155 CryptoDB 1169540 GCA_001179505.1_Vbrassicaformis GCA_001179505.1 False Vitrella brassicaformis CCMP3155 V.brassicaformis CCMP3155 (2015) https://genome.ucsc.edu/h/GCA_001179505.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/179/505/GCA_001179505.1/genes/GCA_001179505.1_Vbrassicaformis.augustus.gtf.gz -Penicillium digitatum Pd1 INSDC GCF_000315645.1 yes 0 53 0 Penicillium digitatum Pd1 FungiDB 1170230 GCF_000315645.1_PdigPd1_v1 GCA_000315645.2 GCF_000315645.1 False Penicillium digitatum Pd1 ascomycetes P.digitatum (Pd1 2012 refseq) https://genome.ucsc.edu/h/GCF_000315645.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/315/645/GCF_000315645.1/genes/GCF_000315645.1_PdigPd1_v1.ncbiRefSeq.gtf.gz -Encephalitozoon romaleae SJ-2008 GenBank GCA_000280035.2 yes 0 0 13 Encephalitozoon romaleae SJ-2008 MicrosporidiaDB 1178016 GCF_000280035.1_ASM28003v2 GCA_000280035.2 GCF_000280035.1 True Encephalitozoon romaleae SJ-2008 microsporidians E.romaleae SJ-2008 https://genome.ucsc.edu/h/GCF_000280035.1 -Cladophialophora psammophila CBS 110553 INSDC GCA_000585535.1 yes 0 123 0 Cladophialophora psammophila CBS 110553 FungiDB 1182543 GCF_000585535.1_Clad_psam_CBS_110553_V1 GCA_000585535.1 GCF_000585535.1 True Cladophialophora psammophila CBS 110553 ascomycetes C.psammophila CBS 110553 https://genome.ucsc.edu/h/GCF_000585535.1 -Cladophialophora yegresii CBS 114405 INSDC GCA_000585515.1 yes 0 8 0 Cladophialophora yegresii CBS 114405 FungiDB 1182544 GCF_000585515.1_Clad_yegr_CBS_114405_V1 GCA_000585515.1 GCF_000585515.1 True Cladophialophora yegresii CBS 114405 ascomycetes C.yegresii CBS 114405 https://genome.ucsc.edu/h/GCF_000585515.1 -Exophiala aquamarina CBS 119918 INSDC GCA_000709125.1 yes 0 151 0 Exophiala aquamarina CBS 119918 FungiDB 1182545 GCF_000709125.1_Exop_aqua_CBS_119918_V1 GCA_000709125.1 GCF_000709125.1 True Exophiala aquamarina CBS 119918 ascomycetes E.aquamarina CBS 119918 https://genome.ucsc.edu/h/GCF_000709125.1 -Trichosporon asahii var. asahii CBS 2479 INSDC GCA_000293215.1 yes 0 77 0 Trichosporon asahii var. asahii CBS 2479 FungiDB 1186058 GCF_000293215.1_Trichosporon_asahii_1 GCA_000293215.1 GCF_000293215.1 True Trichosporon asahii var. asahii CBS 2479 basidiomycetes T.asahii var. asahii CBS 2479 https://genome.ucsc.edu/h/GCF_000293215.1 -Toxoplasma gondii CtCo5 GenBank GCA_000278365.1 no 6177 0 0 Toxoplasma gondii CtCo5 ToxoDB 1194599 GCA_000278365.1_ASM27836v1 GCA_000278365.1 False Toxoplasma gondii CtCo5 apicomplexans T.gondii (CtCo5 2012) https://genome.ucsc.edu/h/GCA_000278365.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/278/365/GCA_000278365.1/genes/GCA_000278365.1_ASM27836v1.augustus.gtf.gz -Verticillium dahliae JR2 INSDC GCA_000400815.2 yes 0 0 8 Verticillium dahliae JR2 FungiDB 1202531 GCA_000400815.2_VDAG_JR2v.4.0 GCA_000400815.2 False Verticillium dahliae JR2 ascomycetes V.dahliae (JR2 2014) https://genome.ucsc.edu/h/GCA_000400815.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/400/815/GCA_000400815.2/genes/GCA_000400815.2_VDAG_JR2v.4.0.augustus.gtf.gz -Leishmania aethiopica L147 GenBank GCA_000444285.2 yes 0 124 36 Leishmania aethiopica L147 TriTrypDB 1206056 GCA_000444285.2_Leishmania_aethiopica-L147-2.0.3 GCA_000444285.2 False Leishmania aethiopica L147 Leishmania aethiopica (L147 2016) https://genome.ucsc.edu/h/GCA_000444285.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/444/285/GCA_000444285.2/genes/GCA_000444285.2_Leishmania_aethiopica-L147-2.0.3.augustus.gtf.gz -Leishmania tropica L590 GenBank GCA_000410715.1 yes 0 124 36 Leishmania tropica L590 TriTrypDB 1206058 GCA_000410715.1_Leishmania_tropica_L590-2.0.2 GCA_000410715.1 False Leishmania tropica L590 Leishmania tropica (L590 2013) https://genome.ucsc.edu/h/GCA_000410715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/410/715/GCA_000410715.1/genes/GCA_000410715.1_Leishmania_tropica_L590-2.0.2.augustus.gtf.gz -Trypanosoma cruzi Tula cl2 GenBank GCA_000365225.1 no 43931 1780 0 Trypanosoma cruzi Tula cl2 TriTrypDB 1206070 GCA_000365225.1_Trypanosoma_cruzi_Tula_cl2-1.0.1 GCA_000365225.1 False Trypanosoma cruzi Tula cl2 Trypanosoma cruzi (Tula cl2 2013) https://genome.ucsc.edu/h/GCA_000365225.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/365/225/GCA_000365225.1/genes/GCA_000365225.1_Trypanosoma_cruzi_Tula_cl2-1.0.1.augustus.gtf.gz -Toxoplasma gondii RH-88 INSDC GCA_013099955.1 no 0 183 13 Toxoplasma gondii RH-88 ToxoDB 5811 GCA_013099955.1_tgrh88 GCA_013099955.1 False Toxoplasma gondii apicomplexans T.gondii (RH-88 2020) https://genome.ucsc.edu/h/GCA_013099955.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/099/955/GCA_013099955.1/genes/GCA_013099955.1_tgrh88.augustus.gtf.gz -Pneumocystis jirovecii SE8 GenBank GCA_000333975.2 yes 0 328 0 Pneumocystis jirovecii SE8 FungiDB 42068 GCA_000333975.2_ASM33397v2 GCA_000333975.2 False Pneumocystis jirovecii ascomycetes P.jirovecii (SE8 2012) https://genome.ucsc.edu/h/GCA_000333975.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/333/975/GCA_000333975.2/genes/GCA_000333975.2_ASM33397v2.augustus.gtf.gz -Cyphellophora europaea CBS 101466 GenBank GCA_000365145.2 yes 0 19 0 Cyphellophora europaea CBS 101466 FungiDB 1220924 GCF_000365145.1_Phia_euro_CBS_101466_V1 GCA_000365145.2 GCF_000365145.1 True Cyphellophora europaea CBS 101466 ascomycetes C.europaea CBS 101466 https://genome.ucsc.edu/h/GCF_000365145.1 -Mucor circinelloides 1006PhL GenBank GCA_000401635.1 yes 0 470 0 Mucor circinelloides 1006PhL FungiDB 1220926 GCA_000401635.1_Muco_sp_1006Ph_V1 GCA_000401635.1 False Mucor circinelloides 1006PhL fungi M.circinelloides (1006PhL 2013) https://genome.ucsc.edu/h/GCA_000401635.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/401/635/GCA_000401635.1/genes/GCA_000401635.1_Muco_sp_1006Ph_V1.augustus.gtf.gz -Pythium aphanidermatum DAOM BR444 GenBank GCA_000387445.2 yes 0 1774 0 Pythium aphanidermatum DAOM BR444 FungiDB 1223555 GCA_000387445.2_pag1_scaffolds_v1 GCA_000387445.2 False Pythium aphanidermatum DAOM BR444 oomycetes (DAOM BR444 2013) https://genome.ucsc.edu/h/GCA_000387445.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/387/445/GCA_000387445.2/genes/GCA_000387445.2_pag1_scaffolds_v1.augustus.gtf.gz -Pythium arrhenomanes ATCC 12531 GenBank GCA_000387505.2 yes 0 10972 0 Pythium arrhenomanes ATCC 12531 FungiDB 1223556 GCA_000387505.2_par_scaffolds_v1 GCA_000387505.2 False Pythium arrhenomanes ATCC 12531 oomycetes (ATCC 12531 2013) https://genome.ucsc.edu/h/GCA_000387505.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/387/505/GCA_000387505.2/genes/GCA_000387505.2_par_scaffolds_v1.augustus.gtf.gz -Globisporangium irregulare DAOM BR486 GenBank GCA_000387425.2 yes 0 5887 0 Globisporangium irregulare DAOM BR486 FungiDB 1223557 GCA_000387425.2_pir_scaffolds_v1 GCA_000387425.2 False Globisporangium irregulare DAOM BR486 oomycetes (DAOM BR486 2013) https://genome.ucsc.edu/h/GCA_000387425.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/387/425/GCA_000387425.2/genes/GCA_000387425.2_pir_scaffolds_v1.augustus.gtf.gz -Globisporangium iwayamae DAOM BR242034 GenBank GCA_000387465.2 yes 0 11542 0 Globisporangium iwayamae DAOM BR242034 FungiDB 1223558 GCA_000387465.2_piw_scaffolds_v1 GCA_000387465.2 False Globisporangium iwayamae DAOM BR242034 oomycetes (DAOM BR242034 2013) https://genome.ucsc.edu/h/GCA_000387465.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/387/465/GCA_000387465.2/genes/GCA_000387465.2_piw_scaffolds_v1.augustus.gtf.gz -Globisporangium ultimum var. sporangiiferum BR650 GenBank GCA_000387525.2 no 0 5482 0 Globisporangium ultimum var. sporangiiferum BR650 FungiDB 1223559 GCA_000387525.2_pug3_scaffolds_v1 GCA_000387525.2 False Globisporangium ultimum var. sporangiiferum BR650 oomycetes (DAOM BR650 2013) https://genome.ucsc.edu/h/GCA_000387525.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/387/525/GCA_000387525.2/genes/GCA_000387525.2_pug3_scaffolds_v1.augustus.gtf.gz -Phytopythium vexans DAOM BR484 GenBank GCA_000387545.2 yes 0 3685 0 Phytopythium vexans DAOM BR484 FungiDB 1223560 GCA_000387545.2_pve_scaffolds_v1 GCA_000387545.2 False Phytopythium vexans DAOM BR484 oomycetes (DAOM BR484 2013) https://genome.ucsc.edu/h/GCA_000387545.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/387/545/GCA_000387545.2/genes/GCA_000387545.2_pve_scaffolds_v1.augustus.gtf.gz -Fusarium proliferatum ET1 GenBank GCA_900067095.1 yes 32 0 0 Fusarium proliferatum ET1 FungiDB 1227346 GCF_900067095.1_F._proliferatum_ET1_version_1 GCA_900067095.1 GCF_900067095.1 True Fusarium proliferatum ET1 ascomycetes F.proliferatum ET1 https://genome.ucsc.edu/h/GCF_900067095.1 -Fusarium oxysporum f. sp. cubense race 1 GenBank GCA_000350345.1 no 0 1341 0 Fusarium oxysporum f. sp. cubense race 1 FungiDB 1229664 GCA_000350345.1_Foc1_1.0 GCA_000350345.1 False Fusarium oxysporum f. sp. cubense race 1 ascomycetes F.oxysporum f. sp. cubense (race 1 2013) https://genome.ucsc.edu/h/GCA_000350345.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/350/345/GCA_000350345.1/genes/GCA_000350345.1_Foc1_1.0.augustus.gtf.gz -Malassezia sympodialis ATCC 42132 INSDC GCA_900149145.1 yes 0 0 8 Malassezia sympodialis ATCC 42132 FungiDB 1230383 GCA_900149145.1_Msy_ATCC_42132_Feb2016 GCA_900149145.1 False Malassezia sympodialis ATCC 42132 basidiomycetes M.sympodialis (ATCC 42132 2017) https://genome.ucsc.edu/h/GCA_900149145.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/149/145/GCA_900149145.1/genes/GCA_900149145.1_Msy_ATCC_42132_Feb2016.augustus.gtf.gz -Plasmodium inui San Antonio 1 GenBank GCA_000524495.1 yes 0 323 0 Plasmodium inui San Antonio 1 PlasmoDB 1237626 GCF_000524495.1_Plas_inui_San_Antonio_1_V1 GCA_000524495.1 GCF_000524495.1 True Plasmodium inui San Antonio 1 apicomplexans P.inui (San Antonio 1 2014) https://genome.ucsc.edu/h/GCF_000524495.1 -Anncaliia algerae PRA109 GenBank GCA_000385855.2 yes 0 7113 0 Anncaliia algerae PRA109 MicrosporidiaDB 1240240 GCA_000385855.2_Annc_alge_PRA109_V4 GCA_000385855.2 False Anncaliia algerae PRA109 microsporidians A.algerae (PRA109 2014) https://genome.ucsc.edu/h/GCA_000385855.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/385/855/GCA_000385855.2/genes/GCA_000385855.2_Annc_alge_PRA109_V4.augustus.gtf.gz -Emmonsia crescens UAMH 3008 INSDC GCA_001008285.1 yes 0 1734 0 Emmonsia crescens UAMH 3008 FungiDB 1247875 GCA_001008285.1_ASM100828v1 GCA_001008285.1 False Emmonsia crescens UAMH 3008 ascomycetes E.crescens (UAMH 3008 2015) https://genome.ucsc.edu/h/GCA_001008285.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/008/285/GCA_001008285.1/genes/GCA_001008285.1_ASM100828v1.augustus.gtf.gz -Acanthamoeba castellanii str. Neff GenBank GCA_000313135.1 yes 0 384 0 Acanthamoeba castellanii str. Neff AmoebaDB 1257118 GCF_000313135.1_Acastellanii.strNEFF_v1 GCA_000313135.1 GCF_000313135.1 True Acanthamoeba castellanii str. Neff A.castellanii str. (Neff 2013) https://genome.ucsc.edu/h/GCF_000313135.1 -Ophiostoma piceae UAMH 11346 INSDC GCA_000410735.1 yes 0 45 0 Ophiostoma piceae UAMH 11346 FungiDB 1262450 GCA_000410735.1_Opiceae_UAMHv01 GCA_000410735.1 False Ophiostoma piceae UAMH 11346 ascomycetes O.piceae (UAMH 11346 2013) https://genome.ucsc.edu/h/GCA_000410735.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/410/735/GCA_000410735.1/genes/GCA_000410735.1_Opiceae_UAMHv01.augustus.gtf.gz -Lichtheimia corymbifera JMRC:FSU:9682 INSDC GCA_000723665.1 yes 0 209 0 Lichtheimia corymbifera JMRC:FSU:9682 FungiDB 1263082 GCA_000723665.1_454Minimus GCA_000723665.1 False Lichtheimia corymbifera JMRC:FSU:9682 mucoromycotan L.corymbifera JMRC:FSU:9682 (FSU 9682 2014) https://genome.ucsc.edu/h/GCA_000723665.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/723/665/GCA_000723665.1/genes/GCA_000723665.1_454Minimus.augustus.gtf.gz -Plasmodium vivax Sal-1 GenBank GCA_000002415.2 no 2733 0 14 Plasmodium vivax Sal-1 PlasmoDB 5855 GCF_000002415.2_ASM241v2 GCA_000002415.2 GCF_000002415.2 False Plasmodium vivax malaria parasite P. vivax (Salvador I 2009) https://genome.ucsc.edu/h/GCF_000002415.2 -Blumeria graminis f. sp. tritici 96224 INSDC GCA_900519115.1 yes 0 0 12 Blumeria graminis f. sp. tritici 96224 FungiDB 62690 GCA_900519115.1_Bgt_genome_v3.16 GCA_900519115.1 False Blumeria graminis f. sp. tritici grass mildew (2019) https://genome.ucsc.edu/h/GCA_900519115.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/519/115/GCA_900519115.1/genes/GCA_900519115.1_Bgt_genome_v3.16.augustus.gtf.gz -Plasmodium cynomolgi strain M GenBank GCA_900180395.1 yes 40 0 14 Plasmodium cynomolgi strain M PlasmoDB 5827 GCA_900180395.1_PcyM GCA_900180395.1 False Plasmodium cynomolgi apicomplexans P.cynomolgi (M 2017) https://genome.ucsc.edu/h/GCA_900180395.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/180/395/GCA_900180395.1/genes/GCA_900180395.1_PcyM.augustus.gtf.gz -Metarhizium anisopliae ARSEF 549 INSDC GCA_000814975.1 yes 0 74 0 Metarhizium anisopliae ARSEF 549 FungiDB 1276135 GCA_000814975.1_MAN_1.0 GCA_000814975.1 False Metarhizium anisopliae ARSEF 549 ascomycetes M.anisopliae (ARSEF 549 2015) https://genome.ucsc.edu/h/GCA_000814975.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/814/975/GCA_000814975.1/genes/GCA_000814975.1_MAN_1.0.augustus.gtf.gz -Zymoseptoria tritici ST99CH_3D1 INSDC GCA_900184105.1 no 0 0 21 Zymoseptoria tritici ST99CH_3D1 FungiDB 1276537 GCA_900184105.1_ST99CH_3D1 GCA_900184105.1 False Zymoseptoria tritici ST99CH_3D1 ascomycetes Z.tritici ST99CH_3D1 (2017) https://genome.ucsc.edu/h/GCA_900184105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/184/105/GCA_900184105.1/genes/GCA_900184105.1_ST99CH_3D1.augustus.gtf.gz -Cladophialophora carrionii CBS 160.54 INSDC GCA_000365165.2 no 0 19 0 Cladophialophora carrionii CBS 160.54 FungiDB 1279043 GCF_000365165.1_Clad_carr_CBS_160_54_V1 GCA_000365165.2 GCF_000365165.1 True Cladophialophora carrionii CBS 160.54 ascomycetes C.carrionii CBS 160.54 https://genome.ucsc.edu/h/GCF_000365165.1 -Fusarium fujikuroi IMI 58289 GenBank GCA_900079805.1 yes 0 0 12 Fusarium fujikuroi IMI 58289 FungiDB 1279085 GCF_900079805.1_Fusarium_fujikuroi_IMI58289_V2 GCA_900079805.1 GCF_900079805.1 True Fusarium fujikuroi IMI 58289 ascomycetes F.fujikuroi IMI 58289 https://genome.ucsc.edu/h/GCF_900079805.1 -Stachybotrys chartarum IBT 40293 INSDC GCA_000732565.1 yes 0 2342 0 Stachybotrys chartarum IBT 40293 FungiDB 1280524 GCA_000732565.1_S40293v1 GCA_000732565.1 False Stachybotrys chartarum IBT 40293 ascomycetes S.chartarum (IBT 40293 2014) https://genome.ucsc.edu/h/GCA_000732565.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/732/565/GCA_000732565.1/genes/GCA_000732565.1_S40293v1.augustus.gtf.gz -Anncaliia algerae PRA339 GenBank GCA_000385875.2 no 0 431 0 Anncaliia algerae PRA339 MicrosporidiaDB 1288291 GCA_000385875.2_Annc_alge_insect_USDA_JJB_V2 GCA_000385875.2 False Anncaliia algerae PRA339 microsporidians A.algerae (PRA339 2014) https://genome.ucsc.edu/h/GCA_000385875.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/385/875/GCA_000385875.2/genes/GCA_000385875.2_Annc_alge_insect_USDA_JJB_V2.augustus.gtf.gz -Leishmania panamensis MHOM/COL/81/L13 GenBank GCA_000340495.1 yes 0 820 36 Leishmania panamensis MHOM/COL/81/L13 TriTrypDB 1295824 GCA_000340495.1_Leishmania_panamensis_L13-1.3.1 GCA_000340495.1 False Leishmania panamensis MHOM/COL/81/L13 Leishmania panamensis (MHOM/COL/81/L13 2013) https://genome.ucsc.edu/h/GCA_000340495.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/340/495/GCA_000340495.1/genes/GCA_000340495.1_Leishmania_panamensis_L13-1.3.1.augustus.gtf.gz -Leishmania braziliensis MHOM/BR/75/M2903 GenBank GCA_000340355.2 no 0 709 35 Leishmania braziliensis MHOM/BR/75/M2903 TriTrypDB 1295825 GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6 GCA_000340355.2 False Leishmania braziliensis MHOM/BR/75/M2903 Leishmania braziliensis (MHOM/BR/75/M2903 2016 kinetoplastids) https://genome.ucsc.edu/h/GCA_000340355.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/340/355/GCA_000340355.2/genes/GCA_000340355.2_Leishmania_braziliensis_M2903-1.0.6.augustus.gtf.gz -Cryptococcus gattii EJB2 GenBank GCA_000835745.1 no 0 282 0 Cryptococcus gattii VGI EJB2 FungiDB 1296103 GCA_000835745.1_Cryp_gatt_EJB2_V1 GCA_000835745.1 False Cryptococcus gattii EJB2 basidiomycetes C.gattii (EJB2 2015) https://genome.ucsc.edu/h/GCA_000835745.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/835/745/GCA_000835745.1/genes/GCA_000835745.1_Cryp_gatt_EJB2_V1.augustus.gtf.gz -Cryptococcus gattii NT-10 GenBank GCA_000935105.1 no 0 226 0 Cryptococcus gattii VGI NT10 FungiDB 1296108 GCA_000935105.1_Cryp_gatt_NT-10_V1 GCA_000935105.1 False Cryptococcus gattii NT-10 basidiomycetes C.gattii (NT-10 2015) https://genome.ucsc.edu/h/GCA_000935105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/935/105/GCA_000935105.1/genes/GCA_000935105.1_Cryp_gatt_NT-10_V1.augustus.gtf.gz -Cryptococcus gattii CA1873 GenBank GCA_000855695.1 no 0 33 0 Cryptococcus gattii VGIII CA1873 FungiDB 1296111 GCA_000855695.1_Cryp_gatt_CA1873_V1 GCA_000855695.1 False Cryptococcus bacillisporus CA1873 basidiomycetes C.bacillisporus (CA1873 2015) https://genome.ucsc.edu/h/GCA_000855695.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/855/695/GCA_000855695.1/genes/GCA_000855695.1_Cryp_gatt_CA1873_V1.augustus.gtf.gz -Kwoniella heveanensis CBS 569 GenBank GCA_000507425.3 yes 0 242 0 Kwoniella heveanensis CBS 569 FungiDB 1296119 GCA_000507425.3_Cryp_heve_CBS569_V2 GCA_000507425.3 False Kwoniella heveanensis CBS 569 basidiomycetes K.heveanensis (CBS 569 2016) https://genome.ucsc.edu/h/GCA_000507425.3 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/507/425/GCA_000507425.3/genes/GCA_000507425.3_Cryp_heve_CBS569_V2.augustus.gtf.gz -Mastigamoeba balamuthi ATCC 30984 INSDC GCA_902651635.1 yes 0 1925 0 Mastigamoeba balamuthi ATCC 30984 AmoebaDB 108607 GCA_902651635.1_mastiga_genome_v5.1 GCA_902651635.1 False Mastigamoeba balamuthi M.balamuthi (2019) https://genome.ucsc.edu/h/GCA_902651635.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/902/651/635/GCA_902651635.1/genes/GCA_902651635.1_mastiga_genome_v5.1.augustus.gtf.gz -Lentinus tigrinus ALCF2SS1-7 INSDC GCA_003813185.1 yes 0 207 0 Lentinus tigrinus ALCF2SS1-7 FungiDB 1328758 GCA_003813185.1_Lenti7_1 GCA_003813185.1 GCF_003813185.1 True Lentinus tigrinus ALCF2SS1-7 basidiomycetes L.tigrinus (ALCF2SS1-7 2018) https://genome.ucsc.edu/h/GCA_003813185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/813/185/GCA_003813185.1/genes/GCA_003813185.1_Lenti7_1.augustus.gtf.gz -Aspergillus niger ATCC 13496 GenBank GCA_003344705.1 no 0 133 0 Aspergillus niger ATCC 13496 FungiDB 1353008 GCA_003344705.1_Aspni_bvT_1 GCA_003344705.1 False Aspergillus niger ATCC 13496 ascomycetes A.niger (ATCC 13496 2018) https://genome.ucsc.edu/h/GCA_003344705.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/344/705/GCA_003344705.1/genes/GCA_003344705.1_Aspni_bvT_1.augustus.gtf.gz -Ordospora colligata OC4 GenBank GCA_000803265.1 yes 15 0 0 Ordospora colligata OC4 MicrosporidiaDB 1354746 GCF_000803265.1_ASM80326v1 GCA_000803265.1 GCF_000803265.1 True Ordospora colligata OC4 microsporidians O.colligata OC4 https://genome.ucsc.edu/h/GCF_000803265.1 -Encephalitozoon cuniculi EcunIII-L GenBank GCA_001078035.1 no 0 0 15 Encephalitozoon cuniculi EcunIII-L MicrosporidiaDB 1355160 GCA_001078035.1_ECIIIL GCA_001078035.1 False Encephalitozoon cuniculi EcunIII-L microsporidians E.cuniculi (EcunIII-L 2015) https://genome.ucsc.edu/h/GCA_001078035.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/078/035/GCA_001078035.1/genes/GCA_001078035.1_ECIIIL.augustus.gtf.gz -Spraguea lophii 42_110 GenBank GCA_000430065.1 yes 1392 0 0 Spraguea lophii 42_110 MicrosporidiaDB 1358809 GCA_000430065.1_Sprlop1.0 GCA_000430065.1 False Spraguea lophii 42_110 microsporidians S.lophii (42_110 2013) https://genome.ucsc.edu/h/GCA_000430065.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/430/065/GCA_000430065.1/genes/GCA_000430065.1_Sprlop1.0.augustus.gtf.gz -Plasmodium falciparum HB3 GenBank GCA_900631985.1 no 12 0 14 Plasmodium falciparum HB3 PlasmoDB 5833 GCA_900631985.1_PfHB3-3 GCA_900631985.1 False Plasmodium falciparum malaria parasite P. falciparum (HB3 2018) https://genome.ucsc.edu/h/GCA_900631985.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/631/985/GCA_900631985.1/genes/GCA_900631985.1_PfHB3-3.augustus.gtf.gz -Aspergillus campestris IBT 28561 GenBank GCA_002847485.1 yes 62 0 0 Aspergillus campestris IBT 28561 FungiDB 1392248 GCF_002847485.1_Aspcam1 GCA_002847485.1 GCF_002847485.1 True Aspergillus campestris IBT 28561 ascomycetes A.campestris IBT 28561 https://genome.ucsc.edu/h/GCF_002847485.1 -Aspergillus steynii IBT 23096 GenBank GCA_002849105.1 yes 37 0 0 Aspergillus steynii IBT 23096 FungiDB 1392250 GCF_002849105.1_Aspste1 GCA_002849105.1 GCF_002849105.1 True Aspergillus steynii IBT 23096 ascomycetes A.steynii IBT 23096 https://genome.ucsc.edu/h/GCF_002849105.1 -Aspergillus novofumigatus IBT 16806 GenBank GCA_002847465.1 yes 62 0 0 Aspergillus novofumigatus IBT 16806 FungiDB 1392255 GCF_002847465.1_Aspnov1 GCA_002847465.1 GCF_002847465.1 True Aspergillus novofumigatus IBT 16806 ascomycetes A.novofumigatus IBT 16806 https://genome.ucsc.edu/h/GCF_002847465.1 -Aspergillus ochraceoroseus IBT 24754 GenBank GCA_002846915.2 yes 34 0 0 Aspergillus ochraceoroseus IBT 24754 FungiDB 1392256 GCF_002846915.1_Aspergillus_ochraceoroseus_IBT_24754_v1.1 GCA_002846915.2 GCF_002846915.1 True Aspergillus ochraceoroseus IBT 24754 ascomycetes A.ochraceoroseus IBT 24754 https://genome.ucsc.edu/h/GCF_002846915.1 -Cryptococcus neoformans var. neoformans XL280 INSDC GCA_002216205.1 no 0 32 5 Cryptococcus neoformans var. neoformans XL280 FungiDB 1396488 GCA_002216205.1_ASM221620v1 GCA_002216205.1 False Cryptococcus neoformans var. neoformans XL280 basidiomycetes C.neoformans var. neoformans (XL280 2017) https://genome.ucsc.edu/h/GCA_002216205.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/216/205/GCA_002216205.1/genes/GCA_002216205.1_ASM221620v1.augustus.gtf.gz -Sporothrix schenckii 1099-18 GenBank GCA_000961545.1 yes 15 0 0 Sporothrix schenckii 1099-18 FungiDB 1397361 GCF_000961545.1_S_schenckii_v1 GCA_000961545.1 GCF_000961545.1 True Sporothrix schenckii 1099-18 ascomycetes S.schenckii (1099-18 2015 refseq) https://genome.ucsc.edu/h/GCF_000961545.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/961/545/GCA_000961545.1/genes/GCA_000961545.1_S_schenckii_v1.ncbiRefSeq.gtf.gz -Sporothrix brasiliensis 5110 GenBank GCA_000820605.1 yes 12 0 0 Sporothrix brasiliensis 5110 FungiDB 1398154 GCF_000820605.1_S_brasiliensis_5110_v1 GCA_000820605.1 GCF_000820605.1 True Sporothrix brasiliensis 5110 ascomycetes S.brasiliensis 5110 https://genome.ucsc.edu/h/GCF_000820605.1 -Pneumocystis jirovecii RU7 INSDC GCA_001477535.1 no 0 70 0 Pneumocystis jirovecii RU7 FungiDB 1408657 GCF_001477535.1_Pneu_jiro_RU7_V2 GCA_001477535.1 GCF_001477535.1 True Pneumocystis jirovecii RU7 ascomycetes P.jirovecii RU7 https://genome.ucsc.edu/h/GCF_001477535.1 -Pneumocystis carinii B80 INSDC GCF_001477545.1 yes 0 62 0 Pneumocystis carinii B80 FungiDB 1408658 GCF_001477545.1_Pneu_cari_B80_V3 GCA_001477545.1 GCF_001477545.1 True Pneumocystis carinii B80 ascomycetes P.carinii B80 https://genome.ucsc.edu/h/GCF_001477545.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/001/477/545/GCF_001477545.1/genes/GCF_001477545.1_Pneu_cari_B80_V3.ncbiRefSeq.gtf.gz -Trypanosoma cruzi Dm28c 2014 GenBank GCA_000496795.1 no 1210 0 0 Trypanosoma cruzi Dm28c 2014 TriTrypDB 1416333 GCA_000496795.1_T.cruzi.Dm28c_v01 GCA_000496795.1 False Trypanosoma cruzi Dm28c Trypanosoma cruzi (Dm28c 2013) https://genome.ucsc.edu/h/GCA_000496795.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/496/795/GCA_000496795.1/genes/GCA_000496795.1_T.cruzi.Dm28c_v01.augustus.gtf.gz -Fonsecaea pedrosoi CBS 271.37 GenBank GCA_000835455.1 yes 0 11 0 Fonsecaea pedrosoi CBS 271.37 FungiDB 1442368 GCF_000835455.1_Fons_pedr_CBS_271_37_V1 GCA_000835455.1 GCF_000835455.1 True Fonsecaea pedrosoi CBS 271.37 ascomycetes F.pedrosoi CBS 271.37 https://genome.ucsc.edu/h/GCF_000835455.1 -Rhinocladiella mackenziei CBS 650.93 INSDC GCA_000835555.1 yes 0 17 0 Rhinocladiella mackenziei CBS 650.93 FungiDB 1442369 GCF_000835555.1_Rhin_mack_CBS_650_93_V1 GCA_000835555.1 GCF_000835555.1 True Rhinocladiella mackenziei CBS 650.93 ascomycetes R.mackenziei CBS 650.93 https://genome.ucsc.edu/h/GCF_000835555.1 -Cladophialophora bantiana CBS 173.52 INSDC GCA_000835475.1 yes 0 60 0 Cladophialophora bantiana CBS 173.52 FungiDB 1442370 GCF_000835475.1_Clad_bant_CBS_173_52_V1 GCA_000835475.1 GCF_000835475.1 True Cladophialophora bantiana CBS 173.52 ascomycetes C.bantiana CBS 173.52 https://genome.ucsc.edu/h/GCF_000835475.1 -Fonsecaea multimorphosa CBS 102226 INSDC GCA_000836435.1 yes 0 67 0 Fonsecaea multimorphosa CBS 102226 FungiDB 1442371 GCF_000836435.1_Fons_mult_CBS_102226_V1 GCA_000836435.1 GCF_000836435.1 True Fonsecaea multimorphosa CBS 102226 ascomycetes F.multimorphosa CBS 102226 https://genome.ucsc.edu/h/GCF_000836435.1 -Emergomyces pasteurianus Ep9510 INSDC GCA_001883825.1 yes 0 1643 0 Emergomyces pasteurianus Ep9510 FungiDB 1447872 GCA_001883825.1_Emmo_past_UAMH9510_V1 GCA_001883825.1 False Emergomyces pasteurianus Ep9510 ascomycetes E.pasteurianus Ep9510 (UAMH 9510 2016) https://genome.ucsc.edu/h/GCA_001883825.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/883/825/GCA_001883825.1/genes/GCA_001883825.1_Emmo_past_UAMH9510_V1.augustus.gtf.gz -Aspergillus eucalypticola CBS 122712 INSDC GCA_003184535.1 yes 0 131 0 Aspergillus eucalypticola CBS 122712 FungiDB 1448314 GCF_003184535.1_Aspeuc1 GCA_003184535.1 GCF_003184535.1 True Aspergillus eucalypticola CBS 122712 ascomycetes A.eucalypticola CBS 122712 https://genome.ucsc.edu/h/GCF_003184535.1 -Aspergillus uvarum CBS 121591 INSDC GCA_003184745.1 yes 0 172 0 Aspergillus uvarum CBS 121591 FungiDB 1448315 GCF_003184745.1_Aspuva1 GCA_003184745.1 GCF_003184745.1 True Aspergillus uvarum CBS 121591 ascomycetes A.uvarum CBS 121591 https://genome.ucsc.edu/h/GCF_003184745.1 -Aspergillus ibericus CBS 121593 INSDC GCA_003184845.1 yes 0 116 0 Aspergillus ibericus CBS 121593 FungiDB 1448316 GCF_003184845.1_Aspibe1 GCA_003184845.1 GCF_003184845.1 True Aspergillus ibericus CBS 121593 ascomycetes A.ibericus CBS 121593 https://genome.ucsc.edu/h/GCF_003184845.1 -Aspergillus sclerotiicarbonarius CBS 121057 INSDC GCA_003184635.1 yes 0 166 0 Aspergillus sclerotiicarbonarius CBS 121057 FungiDB 1448318 GCA_003184635.1_Aspscle1 GCA_003184635.1 False Aspergillus sclerotiicarbonarius CBS 121057 ascomycetes A.sclerotiicarbonarius (CBS 121057 2018) https://genome.ucsc.edu/h/GCA_003184635.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/184/635/GCA_003184635.1/genes/GCA_003184635.1_Aspscle1.augustus.gtf.gz -Aspergillus fijiensis CBS 313.89 INSDC GCA_003184825.1 yes 0 149 0 Aspergillus fijiensis CBS 313.89 FungiDB 1448319 GCF_003184825.1_Aspfij1 GCA_003184825.1 GCF_003184825.1 True Aspergillus fijiensis CBS 313.89 ascomycetes A.fijiensis CBS 313.89 https://genome.ucsc.edu/h/GCF_003184825.1 -Aspergillus ellipticus CBS 707.79 INSDC GCA_003184645.1 yes 0 518 0 Aspergillus ellipticus CBS 707.79 FungiDB 1448320 GCA_003184645.1_Aspell1 GCA_003184645.1 False Aspergillus ellipticus CBS 707.79 ascomycetes A.ellipticus (CBS 707.79 2018) https://genome.ucsc.edu/h/GCA_003184645.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/184/645/GCA_003184645.1/genes/GCA_003184645.1_Aspell1.augustus.gtf.gz -Aspergillus heteromorphus CBS 117.55 INSDC GCA_003184545.1 yes 0 205 0 Aspergillus heteromorphus CBS 117.55 FungiDB 1448321 GCF_003184545.1_Asphet1 GCA_003184545.1 GCF_003184545.1 True Aspergillus heteromorphus CBS 117.55 ascomycetes A.heteromorphus CBS 117.55 https://genome.ucsc.edu/h/GCF_003184545.1 -Aspergillus homomorphus CBS 101889 INSDC GCA_003184865.1 yes 0 152 0 Aspergillus homomorphus CBS 101889 FungiDB 1450537 GCF_003184865.1_Asphom1 GCA_003184865.1 GCF_003184865.1 True Aspergillus homomorphus CBS 101889 ascomycetes A.homomorphus CBS 101889 https://genome.ucsc.edu/h/GCF_003184865.1 -Theileria equi strain WA GenBank GCA_000342415.1 yes 0 8 2 Theileria equi strain WA PiroplasmaDB 1537102 GCF_000342415.1_JCVI-bewag-v1.1 GCA_000342415.1 GCF_000342415.1 True Theileria equi strain WA apicomplexans T.equi strain (WA 2012) https://genome.ucsc.edu/h/GCF_000342415.1 -Cryptosporidium sp. chipmunk LX-2015 GenBank GCA_000831705.1 yes 853 0 0 Cryptosporidium sp. chipmunk LX-2015 CryptoDB 1603071 GCA_000831705.1_ASM83170v1 GCA_000831705.1 False Cryptosporidium sp. chipmunk LX-2015 apicomplexans C.sp. (chipmunk LX-2015 2015) https://genome.ucsc.edu/h/GCA_000831705.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/831/705/GCA_000831705.1/genes/GCA_000831705.1_ASM83170v1.augustus.gtf.gz -Nematocida ironsii ERTm5 INSDC GCA_001642415.1 yes 0 186 0 Nematocida ironsii ERTm5 MicrosporidiaDB 1805481 GCA_001642415.1_ASM164241v1 GCA_001642415.1 False Nematocida sp. ERTm5 microsporidians N.sp. (ERTm5 2016) https://genome.ucsc.edu/h/GCA_001642415.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/642/415/GCA_001642415.1/genes/GCA_001642415.1_ASM164241v1.augustus.gtf.gz -Trypanosoma brucei brucei TREU927 GenBank GCA_000002445.1 yes 115 0 16 Trypanosoma brucei brucei TREU927 TriTrypDB 185431 GCF_000002445.2_ASM244v1 GCA_000002445.1 GCF_000002445.2 True Trypanosoma brucei brucei TREU927 Trypanosoma brucei brucei (927/4 GUTat10.1 2005 kinetoplastids) https://genome.ucsc.edu/h/GCF_000002445.2 -Amphiamblys sp. WSBS2006 GenBank GCA_001875675.1 yes 1727 0 0 unclassified Amphiamblys WSBS2006 MicrosporidiaDB 1866961 GCA_001875675.1_ASM187567v1 GCA_001875675.1 False Amphiamblys sp. WSBS2006 microsporidians A.sp. (WSBS2006 2016) https://genome.ucsc.edu/h/GCA_001875675.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/875/675/GCA_001875675.1/genes/GCA_001875675.1_ASM187567v1.augustus.gtf.gz -Cryptococcus neoformans var. neoformans JEC21 GenBank GCA_000091045.1 yes 0 0 14 Cryptococcus neoformans var. neoformans JEC21 FungiDB 214684 GCF_000091045.1_ASM9104v1 GCA_000091045.1 GCF_000091045.1 True Cryptococcus neoformans var. neoformans JEC21 basidiomycetes C.neoformans (JEC21 2005 refseq) https://genome.ucsc.edu/h/GCF_000091045.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/091/045/GCA_000091045.1/genes/GCA_000091045.1_ASM9104v1.augustus.gtf.gz -Coccidioides posadasii C735 delta SOWgp GenBank GCA_000151335.1 no 0 55 0 Coccidioides posadasii C735 delta SOWgp FungiDB 222929 GCF_000151335.2_JCVI-cpa1-1.0 GCA_000151335.1 GCF_000151335.2 True Coccidioides posadasii C735 delta SOWgp ascomycetes C.posadasii (C735 delta SOWgp 2009 refseq) https://genome.ucsc.edu/h/GCF_000151335.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/151/335/GCA_000151335.1/genes/GCA_000151335.1_JCVI-cpa1-1.0.augustus.gtf.gz -Chaetothyriales sp. CBS 132003 INSDC GCA_003709865.1 yes 0 118 0 Chaetothyriales sp. CBS 132003 FungiDB 2249419 GCA_003709865.1_ASM370986v1 GCA_003709865.1 False Chaetothyriales sp. CBS 132003 ascomycetes C.sp. (CBS 132003 2018) https://genome.ucsc.edu/h/GCA_003709865.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/709/865/GCA_003709865.1/genes/GCA_003709865.1_ASM370986v1.augustus.gtf.gz -Aspergillus nidulans FGSC A4 GenBank GCA_000149205.2 yes 0 0 8 Aspergillus nidulans FGSC A4 FungiDB 227321 GCF_000149205.2_ASM14920v2 GCA_000149205.2 GCF_000149205.2 True Aspergillus nidulans FGSC A4 ascomycetes A.nidulans (FGSC A4 2012 refseq) https://genome.ucsc.edu/h/GCF_000149205.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/205/GCA_000149205.2/genes/GCA_000149205.2_ASM14920v2.augustus.gtf.gz -Fusarium graminearum PH-1 GenBank GCA_900044135.1 yes 0 1 4 Fusarium graminearum PH-1 FungiDB 5518 GCA_900044135.1_GZPH1RResV1 GCA_900044135.1 False Fusarium graminearum ascomycetes F.graminearum (PH-1 GZPH1RResV1 2016) https://genome.ucsc.edu/h/GCA_900044135.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/044/135/GCA_900044135.1/genes/GCA_900044135.1_GZPH1RResV1.augustus.gtf.gz -Cryptococcus neoformans var. grubii H99 GenBank GCA_000149245.3 no 0 0 14 Cryptococcus neoformans var. grubii H99 FungiDB 235443 GCF_000149245.1_CNA3 GCA_000149245.3 GCF_000149245.1 True Cryptococcus neoformans var. grubii H99 basidiomycetes C.neoformans var. grubii H99 https://genome.ucsc.edu/h/GCF_000149245.1 -Candida albicans SC5314 GenBank GCA_000182965.3 yes 0 0 8 Candida albicans SC5314 FungiDB 237561 GCF_000182965.3_ASM18296v3 GCA_000182965.3 GCF_000182965.3 True Candida albicans SC5314 budding yeast C.albicans SC5314 https://genome.ucsc.edu/h/GCF_000182965.3 -Ustilago maydis 521 GenBank GCA_000328475.2 yes 0 4 23 Ustilago maydis 521 FungiDB 5270 GCF_000328475.2_Umaydis521_2.0 GCA_000328475.2 GCF_000328475.2 True Mycosarcoma maydis smut fungi U.maydis 521 https://genome.ucsc.edu/h/GCF_000328475.2 -Coprinopsis cinerea okayama7#130 GenBank GCA_000182895.1 yes 0 67 0 Coprinopsis cinerea okayama7#130 FungiDB 240176 GCF_000182895.1_CC3 GCA_000182895.1 GCF_000182895.1 True Coprinopsis cinerea okayama7#130 basidiomycetes C.cinerea (okayama7#130 2010 refseq) https://genome.ucsc.edu/h/GCF_000182895.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/182/895/GCA_000182895.1/genes/GCA_000182895.1_CC3.augustus.gtf.gz -Pyricularia oryzae 70-15 GenBank GCA_000002495.2 yes 0 46 7 Pyricularia oryzae 70-15 FungiDB 242507 GCF_000002495.2_MG8 GCA_000002495.2 GCF_000002495.2 True Pyricularia oryzae 70-15 rice blast fungus https://genome.ucsc.edu/h/GCF_000002495.2 -Rhizopus delemar RA 99-880 GenBank GCA_000149305.1 yes 0 81 0 Rhizopus delemar RA 99-880 FungiDB 246409 GCA_000149305.1_RO3 GCA_000149305.1 GCF_000149305.1 True Rhizopus delemar RA 99-880 mucoromycotan R.delemar (RA 99-880 2009) https://genome.ucsc.edu/h/GCA_000149305.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/305/GCA_000149305.1/genes/GCA_000149305.1_RO3.augustus.gtf.gz -Coccidioides immitis RS GenBank GCA_000149335.2 yes 0 6 0 Coccidioides immitis RS FungiDB 246410 GCF_000149335.2_ASM14933v2 GCA_000149335.2 GCF_000149335.2 True Coccidioides immitis RS ascomycetes C.immitis RS https://genome.ucsc.edu/h/GCF_000149335.2 -Microsporidium sp. FI-F-10 INSDC GCA_021821965.1 yes 0 22 0 Microsporidium sp. FI-F-10 MicrosporidiaDB 3039483 GCF_021821965.1_FI-F-10_v._1 GCA_021821965.1 GCF_021821965.1 True Ordospora pajunii microsporidians O.pajunii (FI-F-10 2022) https://genome.ucsc.edu/h/GCF_021821965.1 -Phanerochaete chrysosporium RP-78 GenBank GCA_000167175.1 yes 0 232 0 Phanerochaete chrysosporium RP-78 FungiDB 273507 GCA_000167175.1_ASM16717v1 GCA_000167175.1 False Phanerochaete chrysosporium RP-78 basidiomycetes P.chrysosporium (RP-78 2004) https://genome.ucsc.edu/h/GCA_000167175.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/167/175/GCA_000167175.1/genes/GCA_000167175.1_ASM16717v1.augustus.gtf.gz -Cryptococcus neoformans var. neoformans B-3501A GenBank GCA_000149385.1 no 0 0 14 Cryptococcus neoformans var. neoformans B-3501A FungiDB 283643 GCF_000149385.1_ASM14938v1 GCA_000149385.1 GCF_000149385.1 True Cryptococcus neoformans var. neoformans B-3501A basidiomycetes C.neoformans var. neoformans B-3501A https://genome.ucsc.edu/h/GCF_000149385.1 -Kluyveromyces lactis NRRL Y-1140 INSDC GCA_000002515.1 yes 0 0 6 Kluyveromyces lactis NRRL Y-1140 FungiDB 28985 GCF_000002515.2_ASM251v1 GCA_000002515.1 GCF_000002515.2 False Kluyveromyces lactis budding yeast K.lactis https://genome.ucsc.edu/h/GCF_000002515.2 -Yarrowia lipolytica CLIB122 GenBank GCA_000002525.1 yes 0 0 6 Yarrowia lipolytica CLIB122 FungiDB 284591 GCF_000002525.2_ASM252v1 GCA_000002525.1 GCF_000002525.2 False Yarrowia lipolytica CLIB122 budding yeast Y.lipolytica (CLIB122 2004 refseq) https://genome.ucsc.edu/h/GCF_000002525.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/002/525/GCA_000002525.1/genes/GCA_000002525.1_ASM252v1.augustus.gtf.gz -Debaryomyces hansenii CBS767 INSDC GCA_000006445.2 yes 0 0 7 Debaryomyces hansenii CBS767 FungiDB 284592 GCF_000006445.2_ASM644v2 GCA_000006445.2 GCF_000006445.2 False Debaryomyces hansenii CBS767 budding yeast D.hansenii CBS767 https://genome.ucsc.edu/h/GCF_000006445.2 -Nakaseomyces glabratus CBS 138 GenBank GCA_000002545.2 yes 0 0 13 Nakaseomyces glabratus CBS 138 FungiDB 5478 GCF_000002545.3_ASM254v2 GCA_000002545.2 GCF_000002545.3 False Nakaseomyces glabratus budding yeast N.glabratus (CBS 138 2008 refseq) https://genome.ucsc.edu/h/GCF_000002545.3 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/002/545/GCA_000002545.2/genes/GCA_000002545.2_ASM254v2.augustus.gtf.gz -Encephalitozoon cuniculi GB-M1 GenBank GCA_000091225.2 yes 0 0 11 Encephalitozoon cuniculi GB-M1 MicrosporidiaDB 284813 GCF_000091225.2_ASM9122v2 GCA_000091225.2 GCF_000091225.2 True Encephalitozoon cuniculi GB-M1 microsporidians E.cuniculi (v2 GB-M1 2017) https://genome.ucsc.edu/h/GCF_000091225.2 -Porospora cf. gigantea A INSDC GCA_019968955.1 yes 0 787 0 Porospora gigantea A CryptoDB 2853593 GCF_019968955.1_MNHN_PgigA_v1 GCA_019968955.1 GCF_019968955.1 True Porospora cf. gigantea A apicomplexans P.cf. gigantea (A 2021) https://genome.ucsc.edu/h/GCF_019968955.1 -Acanthamoeba sp. SK_2022c INSDC GCA_027944975.1 no 0 20778 0 Acanthamoeba sp. SK_2022c AmoebaDB 2919603 GCA_027944975.1_ASM2794497v1 GCA_027944975.1 False Acanthamoeba sp. SK_2022c A.sp. (SK_2022c 2023) https://genome.ucsc.edu/h/GCA_027944975.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/027/944/975/GCA_027944975.1/genes/GCA_027944975.1_ASM2794497v1.augustus.gtf.gz -Acanthamoeba sp. SK_2022b INSDC GCA_027943245.1 no 0 1790 0 Acanthamoeba sp. SK_2022b AmoebaDB 2919604 GCA_027943245.1_ASM2794324v1 GCA_027943245.1 False Acanthamoeba sp. SK_2022b A.sp. (SK_2022b 2023) https://genome.ucsc.edu/h/GCA_027943245.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/027/943/245/GCA_027943245.1/genes/GCA_027943245.1_ASM2794324v1.augustus.gtf.gz -Acanthamoeba sp. SK_2022a INSDC GCA_027943295.1 no 0 2108 0 Acanthamoeba sp. SK_2022a AmoebaDB 2919605 GCA_027943295.1_ASM2794329v1 GCA_027943295.1 False Acanthamoeba sp. SK_2022a A.sp. (SK_2022a 2023) https://genome.ucsc.edu/h/GCA_027943295.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/027/943/295/GCA_027943295.1/genes/GCA_027943295.1_ASM2794329v1.augustus.gtf.gz -Entamoeba histolytica HM-1:IMSS GenBank GCA_000208925.2 yes 0 1496 0 Entamoeba histolytica HM-1:IMSS AmoebaDB 294381 GCF_000208925.1_JCVI_ESG2_1.0 GCA_000208925.2 GCF_000208925.1 True Entamoeba histolytica HM-1:IMSS E.histolytica (HM-1:IMSS 2008) https://genome.ucsc.edu/h/GCF_000208925.1 -Meyerozyma guilliermondii ATCC 6260 INSDC GCA_000149425.1 yes 0 9 0 Meyerozyma guilliermondii ATCC 6260 FungiDB 294746 GCF_000149425.1_ASM14942v1 GCA_000149425.1 GCF_000149425.1 True Meyerozyma guilliermondii ATCC 6260 budding yeast M.guilliermondii ATCC 6260 https://genome.ucsc.edu/h/GCF_000149425.1 -Candida tropicalis MYA-3404 GenBank GCA_000006335.3 yes 0 23 0 Candida tropicalis MYA-3404 FungiDB 294747 GCF_000006335.3_ASM633v3 GCA_000006335.3 GCF_000006335.3 True Candida tropicalis MYA-3404 budding yeast C.tropicalis MYA-3404 https://genome.ucsc.edu/h/GCF_000006335.3 -Candida albicans WO-1 GenBank GCA_000149445.2 no 0 16 0 Candida albicans WO-1 FungiDB 294748 GCA_000149445.2_ASM14944v2 GCA_000149445.2 False Candida albicans WO-1 budding yeast C.albicans (WO-1 2009) https://genome.ucsc.edu/h/GCA_000149445.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/445/GCA_000149445.2/genes/GCA_000149445.2_ASM14944v2.augustus.gtf.gz -Cryptococcus gattii VGII R265 GenBank GCA_002954075.1 yes 0 0 14 Cryptococcus gattii VGII R265 FungiDB 294750 GCF_002954075.1_C._deuterogattii_R265_chr GCA_002954075.1 GCF_002954075.1 False Cryptococcus deuterogattii R265 basidiomycetes C.deuterogattii (R265 2018) https://genome.ucsc.edu/h/GCF_002954075.1 -Chaetomium globosum CBS 148.51 INSDC GCA_000143365.1 yes 0 21 0 Chaetomium globosum CBS 148.51 FungiDB 306901 GCF_000143365.1_ASM14336v1 GCA_000143365.1 GCF_000143365.1 True Chaetomium globosum CBS 148.51 ascomycetes C.globosum CBS 148.51 https://genome.ucsc.edu/h/GCF_000143365.1 -Clavispora lusitaniae ATCC 42720 GenBank GCA_000003835.1 yes 0 9 0 Clavispora lusitaniae ATCC 42720 FungiDB 306902 GCF_000003835.1_ASM383v1 GCA_000003835.1 GCF_000003835.1 True Clavispora lusitaniae ATCC 42720 budding yeast C.lusitaniae (ATCC 42720 2009 refseq) https://genome.ucsc.edu/h/GCF_000003835.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/003/835/GCA_000003835.1/genes/GCA_000003835.1_ASM383v1.augustus.gtf.gz -Plasmodium chabaudi chabaudi GenBank GCA_900002335.2 yes 0 0 14 Plasmodium chabaudi chabaudi PlasmoDB 31271 GCF_900002335.3_GCA_900002335 GCA_900002335.2 GCF_900002335.3 False Plasmodium chabaudi chabaudi apicomplexans P.chabaudi chabaudi (AS 2019) https://genome.ucsc.edu/h/GCF_900002335.3 -Parastagonospora nodorum SN15 INSDC GCA_016801405.1 yes 0 0 23 Parastagonospora nodorum SN15 FungiDB 321614 GCA_016801405.1_ASM1680140v1 GCA_016801405.1 False Parastagonospora nodorum SN15 ascomycetes P.nodorum (SN15 2021) https://genome.ucsc.edu/h/GCA_016801405.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/016/801/405/GCA_016801405.1/genes/GCA_016801405.1_ASM1680140v1.augustus.gtf.gz -Aspergillus fumigatus Af293 GenBank GCA_000002655.1 yes 0 0 8 Aspergillus fumigatus Af293 FungiDB 330879 GCF_000002655.1_ASM265v1 GCA_000002655.1 GCF_000002655.1 True Aspergillus fumigatus Af293 ascomycetes A.fumigatus Af293 https://genome.ucsc.edu/h/GCF_000002655.1 -Aspergillus fischeri NRRL 181 GenBank GCA_000149645.4 yes 0 163 0 Aspergillus fischeri NRRL 181 FungiDB 331117 GCF_000149645.3_ASM14964v4 GCA_000149645.4 GCF_000149645.3 True Aspergillus fischeri NRRL 181 ascomycetes A.fischeri (v4 NRRL 181 2006) https://genome.ucsc.edu/h/GCF_000149645.3 -Botrytis cinerea B05.10 GenBank GCA_000143535.4 yes 0 0 18 Botrytis cinerea B05.10 FungiDB 332648 GCF_000143535.2_ASM14353v4 GCA_000143535.4 GCF_000143535.2 True Botrytis cinerea B05.10 ascomycetes B.cinerea B05.10 https://genome.ucsc.edu/h/GCF_000143535.2 -Aspergillus flavus NRRL3357 GenBank GCA_000006275.3 yes 0 282 0 Aspergillus flavus NRRL3357 FungiDB 332952 GCA_000006275.3_JCVI-afl1-v3.0 GCA_000006275.3 False Aspergillus flavus NRRL3357 ascomycetes A.flavus (NRRL3357 2020) https://genome.ucsc.edu/h/GCA_000006275.3 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/006/275/GCA_000006275.3/genes/GCA_000006275.3_JCVI-afl1-v3.0.augustus.gtf.gz -Theileria parva strain Muguga GenBank GCA_000165365.1 yes 0 6 2 Theileria parva strain Muguga PiroplasmaDB 333668 GCF_000165365.1_ASM16536v1 GCA_000165365.1 GCF_000165365.1 True Theileria parva strain Muguga apicomplexans T.parva strain (Muguga 2005) https://genome.ucsc.edu/h/GCF_000165365.1 -Fusarium verticillioides 7600 GenBank GCA_000149555.1 yes 0 10 11 Fusarium verticillioides 7600 FungiDB 334819 GCF_000149555.1_ASM14955v1 GCA_000149555.1 GCF_000149555.1 False Fusarium verticillioides 7600 ascomycetes F.verticillioides 7600 https://genome.ucsc.edu/h/GCF_000149555.1 -Zymoseptoria tritici IPO323 GenBank GCA_000219625.1 yes 0 0 21 Zymoseptoria tritici IPO323 FungiDB 336722 GCF_000219625.1_MYCGR_v2.0 GCA_000219625.1 GCF_000219625.1 True Zymoseptoria tritici IPO323 ascomycetes Z.tritici (IPO323 2011 refseq) https://genome.ucsc.edu/h/GCF_000219625.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/219/625/GCA_000219625.1/genes/GCA_000219625.1_MYCGR_v2.0.ncbiRefSeq.gtf.gz -Uncinocarpus reesii 1704 GenBank GCA_000003515.2 yes 0 44 0 Uncinocarpus reesii 1704 FungiDB 336963 GCF_000003515.1_ASM351v2 GCA_000003515.2 GCF_000003515.1 True Uncinocarpus reesii 1704 ascomycetes U.reesii 1704 https://genome.ucsc.edu/h/GCF_000003515.1 -Histoplasma capsulatum NAm1 GenBank GCA_000149585.1 no 0 276 0 Histoplasma capsulatum NAm1 FungiDB 2059318 GCF_000149585.1_ASM14958v1 GCA_000149585.1 GCF_000149585.1 True Histoplasma mississippiense ascomycetes H.capsulatum NAm1 https://genome.ucsc.edu/h/GCF_000149585.1 -Aspergillus terreus NIH2624 GenBank GCA_000149615.1 yes 0 26 0 Aspergillus terreus NIH2624 FungiDB 341663 GCF_000149615.1_ASM14961v1 GCA_000149615.1 GCF_000149615.1 True Aspergillus terreus NIH2624 ascomycetes A.terreus NIH2624 https://genome.ucsc.edu/h/GCF_000149615.1 -Aspergillus clavatus NRRL 1 GenBank GCA_000002715.1 yes 0 143 0 Aspergillus clavatus NRRL 1 FungiDB 344612 GCF_000002715.2_ASM271v1 GCA_000002715.1 GCF_000002715.2 True Aspergillus clavatus NRRL 1 ascomycetes A.clavatus NRRL 1 https://genome.ucsc.edu/h/GCF_000002715.2 -Leishmania major strain Friedlin GenBank GCA_000002725.2 yes 0 0 36 Leishmania major strain Friedlin TriTrypDB 347515 GCF_000002725.2_ASM272v2 GCA_000002725.2 GCF_000002725.2 True Leishmania major strain Friedlin Leishmania major (Friedlin 2011 kinetoplastids refseq) https://genome.ucsc.edu/h/GCF_000002725.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/002/725/GCA_000002725.2/genes/GCA_000002725.2_ASM272v2.augustus.gtf.gz -Dictyostelium discoideum AX4 INSDC GCF_000004695.1 yes 0 33 7 Dictyostelium discoideum AX4 AmoebaDB 352472 GCA_000004695.1_dicty_2.7 GCA_000004695.1 GCF_000004695.1 False Dictyostelium discoideum AX4 cellular slime molds (AX4 2009) https://genome.ucsc.edu/h/GCA_000004695.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/004/695/GCF_000004695.1/genes/GCF_000004695.1_dicty_2.7.augustus.gtf.gz -Plasmodium yoelii yoelii 17XNL GenBank GCA_000003085.2 no 5617 0 0 Plasmodium yoelii yoelii 17XNL PlasmoDB 73239 GCF_000003085.2_ASM308v2 GCA_000003085.2 GCF_000003085.2 True Plasmodium yoelii yoelii apicomplexans P.yoelii yoelii (17XNL 2002) https://genome.ucsc.edu/h/GCF_000003085.2 -Cryptosporidium hominis TU502 GenBank GCA_000006425.1 yes 1422 0 0 Cryptosporidium hominis TU502 CryptoDB 353151 GCF_000006425.1_ASM642v1 GCA_000006425.1 GCF_000006425.1 True Cryptosporidium hominis TU502 apicomplexans C.hominis (TU502 2004 refseq) https://genome.ucsc.edu/h/GCF_000006425.1 -Cryptosporidium parvum Iowa II GenBank GCA_000165345.1 yes 0 0 8 Cryptosporidium parvum Iowa II CryptoDB 353152 GCF_000165345.1_ASM16534v1 GCA_000165345.1 GCF_000165345.1 True Cryptosporidium parvum Iowa II apicomplexans C.parvum (Iowa type II 2007) https://genome.ucsc.edu/h/GCF_000165345.1 -Trypanosoma cruzi strain CL Brener GenBank GCA_000209065.1 no 29407 0 0 Trypanosoma cruzi strain CL Brener TriTrypDB 5693 GCF_000209065.1_ASM20906v1 GCA_000209065.1 GCF_000209065.1 True Trypanosoma cruzi Trypanosoma cruzi (CL Brener 2005 kinetoplastids) https://genome.ucsc.edu/h/GCF_000209065.1 -Theileria annulata strain Ankara GenBank GCA_000003225.1 yes 0 0 4 Theileria annulata strain Ankara PiroplasmaDB 5874 GCA_000003225.1_ASM322v1 GCA_000003225.1 GCF_000003225.2 False Theileria annulata apicomplexans T.annulata (Ankara isolate clone C9 2005) https://genome.ucsc.edu/h/GCA_000003225.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/003/225/GCA_000003225.1/genes/GCA_000003225.1_ASM322v1.augustus.gtf.gz -Plasmodium falciparum 3D7 GenBank GCA_000002765.3 yes 0 0 14 Plasmodium falciparum 3D7 PlasmoDB 36329 GCF_000002765.5_GCA_000002765 GCA_000002765.3 GCF_000002765.5 False Plasmodium falciparum 3D7 malaria parasite P. falciparum (3D7 2016 refseq) https://genome.ucsc.edu/h/GCF_000002765.5 -Trypanosoma cruzi strain Esmeraldo GenBank GCA_000327425.1 no 15007 796 0 Trypanosoma cruzi strain Esmeraldo TriTrypDB 366581 GCA_000327425.1_Trypanosoma_cruzi-5.1.3 GCA_000327425.1 False Trypanosoma cruzi strain Esmeraldo Trypanosoma cruzi strain (Esmeraldo cl. 3 2013) https://genome.ucsc.edu/h/GCA_000327425.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/327/425/GCA_000327425.1/genes/GCA_000327425.1_Trypanosoma_cruzi-5.1.3.augustus.gtf.gz -Neurospora crassa OR74A GenBank GCA_000182925.2 yes 0 13 7 Neurospora crassa OR74A FungiDB 367110 GCF_000182925.2_NC12 GCA_000182925.2 GCF_000182925.2 True Neurospora crassa OR74A ascomycetes N.crassa OR74A https://genome.ucsc.edu/h/GCF_000182925.2 -Cryptococcus gattii WM276 GenBank GCA_000185945.1 yes 0 0 14 Cryptococcus gattii VGI WM276 FungiDB 367775 GCF_000185945.1_ASM18594v1 GCA_000185945.1 GCF_000185945.1 True Cryptococcus gattii WM276 basidiomycetes C.gattii WM276 https://genome.ucsc.edu/h/GCF_000185945.1 -Entamoeba dispar SAW760 GenBank GCA_000209125.2 yes 0 3312 0 Entamoeba dispar SAW760 AmoebaDB 370354 GCF_000209125.1_JCVI_EDISG_1.0 GCA_000209125.2 GCF_000209125.1 True Entamoeba dispar SAW760 E.dispar (SAW760 2008) https://genome.ucsc.edu/h/GCF_000209125.1 -Entamoeba invadens IP1 GenBank GCA_000330505.1 yes 0 1144 0 Entamoeba invadens IP1 AmoebaDB 370355 GCF_000330505.1_EIA2_v2 GCA_000330505.1 GCF_000330505.1 True Entamoeba invadens IP1 E.invadens (IP1 2013) https://genome.ucsc.edu/h/GCF_000330505.1 -Lodderomyces elongisporus NRRL YB-4239 INSDC GCA_000149685.1 yes 0 27 0 Lodderomyces elongisporus NRRL YB-4239 FungiDB 379508 GCF_000149685.1_ASM14968v1 GCA_000149685.1 GCF_000149685.1 True Lodderomyces elongisporus NRRL YB-4239 budding yeast L.elongisporus (NRRL YB-4239 2007 refseq) https://genome.ucsc.edu/h/GCF_000149685.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/685/GCA_000149685.1/genes/GCA_000149685.1_ASM14968v1.augustus.gtf.gz -Aspergillus niger ATCC 1015 GenBank GCA_000230395.2 no 0 24 0 Aspergillus niger ATCC 1015 FungiDB 380704 GCA_000230395.2_ASPNI_v3.0 GCA_000230395.2 False Aspergillus niger ATCC 1015 ascomycetes A.niger (ATCC 1015 2011) https://genome.ucsc.edu/h/GCA_000230395.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/230/395/GCA_000230395.2/genes/GCA_000230395.2_ASPNI_v3.0.augustus.gtf.gz -Pseudocercospora fijiensis CIRAD86 INSDC GCA_000340215.1 yes 0 56 0 Pseudocercospora fijiensis CIRAD86 FungiDB 383855 GCF_000340215.1_Mycfi2 GCA_000340215.1 GCF_000340215.1 True Pseudocercospora fijiensis CIRAD86 ascomycetes P.fijiensis CIRAD86 https://genome.ucsc.edu/h/GCF_000340215.1 -Ascosphaera apis ARSEF 7405 INSDC GCA_001636715.1 yes 0 82 0 Ascosphaera apis ARSEF 7405 FungiDB 392613 GCA_001636715.1_AAP_1.0 GCA_001636715.1 False Ascosphaera apis ARSEF 7405 ascomycetes A.apis (ARSEF 7405 2016) https://genome.ucsc.edu/h/GCA_001636715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/636/715/GCA_001636715.1/genes/GCA_001636715.1_AAP_1.0.augustus.gtf.gz -Coccidioides immitis H538.4 GenBank GCA_000149815.1 no 0 553 0 Coccidioides immitis H538.4 FungiDB 396776 GCA_000149815.1_ASM14981v1 GCA_000149815.1 False Coccidioides immitis H538.4 ascomycetes C.immitis (H538.4 2006) https://genome.ucsc.edu/h/GCA_000149815.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/815/GCA_000149815.1/genes/GCA_000149815.1_ASM14981v1.augustus.gtf.gz -Schizosaccharomyces japonicus yFS275 GenBank GCA_000149845.2 yes 0 32 0 Schizosaccharomyces japonicus yFS275 FungiDB 402676 GCF_000149845.2_SJ5 GCA_000149845.2 GCF_000149845.2 True Schizosaccharomyces japonicus yFS275 ascomycetes S.japonicus yFS275 https://genome.ucsc.edu/h/GCF_000149845.2 -Batrachochytrium dendrobatidis JEL423 GenBank GCA_000149865.1 yes 0 69 0 Batrachochytrium dendrobatidis JEL423 FungiDB 403673 GCA_000149865.1_BD_JEL423 GCA_000149865.1 False Batrachochytrium dendrobatidis JEL423 chytrids B.dendrobatidis (JEL423 2006) https://genome.ucsc.edu/h/GCA_000149865.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/865/GCA_000149865.1/genes/GCA_000149865.1_BD_JEL423.augustus.gtf.gz -Phytophthora infestans T30-4 GenBank GCA_000142945.1 yes 0 4921 0 Phytophthora infestans T30-4 FungiDB 403677 GCF_000142945.1_ASM14294v1 GCA_000142945.1 GCF_000142945.1 True Phytophthora infestans T30-4 potato late blight agent (T30-4 2009) https://genome.ucsc.edu/h/GCF_000142945.1 -Coccidioides immitis RMSCC 2394 GenBank GCA_000149895.1 no 0 23 0 Coccidioides immitis RMSCC 2394 FungiDB 404692 GCA_000149895.1_ASM14989v1 GCA_000149895.1 False Coccidioides immitis RMSCC 2394 ascomycetes C.immitis (RMSCC 2394 2006) https://genome.ucsc.edu/h/GCA_000149895.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/895/GCA_000149895.1/genes/GCA_000149895.1_ASM14989v1.augustus.gtf.gz -Trichomonas vaginalis G3 GenBank GCA_000002825.1 no 0 64764 0 Trichomonas vaginalis G3 TrichDB 412133 GCF_000002825.2_ASM282v1 GCA_000002825.1 GCF_000002825.2 True Trichomonas vaginalis G3 trichomonads (G3; ATCC PRA-98 2007) https://genome.ucsc.edu/h/GCF_000002825.2 -Trichoderma virens Gv29-8 GenBank GCA_000170995.2 yes 93 0 0 Trichoderma virens Gv29-8 FungiDB 413071 GCF_000170995.1_TRIVI_v2.0 GCA_000170995.2 GCF_000170995.1 True Trichoderma virens Gv29-8 ascomycetes T.virens Gv29-8 https://genome.ucsc.edu/h/GCF_000170995.1 -Eimeria tenella strain Houghton GenBank GCA_000499545.1 no 0 4664 0 Eimeria tenella strain Houghton ToxoDB 5802 GCF_000499545.1_ETH001 GCA_000499545.1 GCF_000499545.1 True Eimeria tenella apicomplexans E.tenella (Houghton 2013) https://genome.ucsc.edu/h/GCF_000499545.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/499/545/GCA_000499545.1/genes/GCA_000499545.1_ETH001.augustus.gtf.gz -Puccinia graminis f. sp. tritici CRL 75-36-700-3 GenBank GCA_000149925.1 yes 0 392 0 Puccinia graminis f. sp. tritici CRL 75-36-700-3 FungiDB 418459 GCF_000149925.1_ASM14992v1 GCA_000149925.1 GCF_000149925.1 True Puccinia graminis f. sp. tritici CRL 75-36-700-3 rust fungi P.graminis f. sp. tritici CRL 75-36-700-3 https://genome.ucsc.edu/h/GCF_000149925.1 -Leishmania braziliensis MHOM/BR/75/M2904 GenBank GCA_000002845.2 yes 103 0 36 Leishmania braziliensis MHOM/BR/75/M2904 TriTrypDB 420245 GCF_000002845.2_ASM284v2 GCA_000002845.2 GCF_000002845.2 True Leishmania braziliensis MHOM/BR/75/M2904 Leishmania braziliensis (MHOM/BR/75/M2904 2011 kinetoplastids) https://genome.ucsc.edu/h/GCF_000002845.2 -Aspergillus niger CBS 513.88 GenBank GCA_000002855.2 yes 0 19 0 Aspergillus niger CBS 513.88 FungiDB 5061 GCF_000002855.4_ASM285v2 GCA_000002855.2 GCF_000002855.4 True Aspergillus niger ascomycetes A.niger (v4 2007) https://genome.ucsc.edu/h/GCF_000002855.4 -Malassezia restricta CBS 7877 INSDC GCA_003691605.1 no 0 0 9 Malassezia restricta CBS 7877 FungiDB 425264 GCA_003691605.1_ASM369160v1 GCA_003691605.1 False Malassezia restricta CBS 7877 basidiomycetes M.restricta (CBS 7877 2018) https://genome.ucsc.edu/h/GCA_003691605.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/691/605/GCA_003691605.1/genes/GCA_003691605.1_ASM369160v1.augustus.gtf.gz -Fusarium oxysporum f. sp. lycopersici 4287 GenBank GCA_000149955.2 yes 0 70 15 Fusarium oxysporum f. sp. lycopersici 4287 FungiDB 426428 GCF_000149955.1_ASM14995v2 GCA_000149955.2 GCF_000149955.1 False Fusarium oxysporum f. sp. lycopersici 4287 ascomycetes F.oxysporum (f. sp. lycopersici 4287 2015) https://genome.ucsc.edu/h/GCF_000149955.1 -Trypanosoma rangeli SC58 GenBank GCA_000492115.1 yes 7433 0 0 Trypanosoma rangeli SC58 TriTrypDB 429131 GCA_000492115.1_T_rangeli_SC58v1 GCA_000492115.1 False Trypanosoma rangeli SC58 Trypanosoma rangeli (SC58 2013) https://genome.ucsc.edu/h/GCA_000492115.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/492/115/GCA_000492115.1/genes/GCA_000492115.1_T_rangeli_SC58v1.augustus.gtf.gz -Trichoderma reesei QM6a GenBank GCA_000167675.2 yes 0 77 0 Trichoderma reesei QM6a FungiDB 431241 GCF_000167675.1_v2.0 GCA_000167675.2 GCF_000167675.1 True Trichoderma reesei QM6a ascomycetes T.reesei QM6a https://genome.ucsc.edu/h/GCF_000167675.1 -Globisporangium ultimum DAOM BR144 GenBank GCA_000143045.1 yes 0 975 0 Globisporangium ultimum DAOM BR144 FungiDB 431595 GCA_000143045.1_pug GCA_000143045.1 False Globisporangium ultimum DAOM BR144 oomycetes (DAOM BR144 2010) https://genome.ucsc.edu/h/GCA_000143045.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/143/045/GCA_000143045.1/genes/GCA_000143045.1_pug.augustus.gtf.gz -Toxoplasma gondii VEG GenBank GCA_000150015.2 no 0 1290 14 Toxoplasma gondii VEG ToxoDB 432359 GCA_000150015.2_TGVEG GCA_000150015.2 False Toxoplasma gondii VEG apicomplexans T.gondii (VEG 2013) https://genome.ucsc.edu/h/GCA_000150015.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/015/GCA_000150015.2/genes/GCA_000150015.2_TGVEG.augustus.gtf.gz -Leishmania infantum JPCM5 GenBank GCA_900500625.2 yes 0 0 36 Leishmania infantum JPCM5 TriTrypDB 5671 GCA_900500625.2_LINF GCA_900500625.2 False Leishmania infantum Leishmania infantum (2020) https://genome.ucsc.edu/h/GCA_900500625.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/500/625/GCA_900500625.2/genes/GCA_900500625.2_LINF.augustus.gtf.gz -Cryptosporidium muris RN66 GenBank GCF_000006515.1 yes 0 84 0 Cryptosporidium muris RN66 CryptoDB 441375 GCF_000006515.1_JCVI_cmg_v1.0 GCA_000006515.1 GCF_000006515.1 True Cryptosporidium muris RN66 apicomplexans C.muris (RN66 2008) https://genome.ucsc.edu/h/GCF_000006515.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/006/515/GCF_000006515.1/genes/GCF_000006515.1_JCVI_cmg_v1.0.ncbiRefSeq.gtf.gz -Talaromyces stipitatus ATCC 10500 GenBank GCA_000003125.1 yes 0 820 0 Talaromyces stipitatus ATCC 10500 FungiDB 441959 GCF_000003125.1_JCVI-TSTA1-3.0 GCA_000003125.1 GCF_000003125.1 True Talaromyces stipitatus ATCC 10500 ascomycetes T.stipitatus ATCC 10500 https://genome.ucsc.edu/h/GCF_000003125.1 -Talaromyces marneffei ATCC 18224 GenBank GCA_000001985.1 yes 0 452 0 Talaromyces marneffei ATCC 18224 FungiDB 441960 GCF_000001985.1_JCVI-PMFA1-2.0 GCA_000001985.1 GCF_000001985.1 True Talaromyces marneffei ATCC 18224 ascomycetes T.marneffei (ATCC 18224 2008 refseq) https://genome.ucsc.edu/h/GCF_000001985.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/001/985/GCA_000001985.1/genes/GCA_000001985.1_JCVI-PMFA1-2.0.augustus.gtf.gz -Coccidioides posadasii str. Silveira GenBank GCA_000170175.2 yes 0 54 0 Coccidioides posadasii str. Silveira FungiDB 443226 GCA_000170175.2_CPS2 GCA_000170175.2 False Coccidioides posadasii str. Silveira ascomycetes C.Silveira (Silveira 2011) https://genome.ucsc.edu/h/GCA_000170175.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/170/175/GCA_000170175.2/genes/GCA_000170175.2_CPS2.augustus.gtf.gz -Histoplasma capsulatum G186AR GenBank GCA_017355575.1 no 0 0 6 Histoplasma capsulatum G186AR FungiDB 447093 GCA_017355575.1_ASM1735557v1 GCA_017355575.1 False Histoplasma capsulatum G186AR ascomycetes H.capsulatum (G186AR 2021) https://genome.ucsc.edu/h/GCA_017355575.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/355/575/GCA_017355575.1/genes/GCA_017355575.1_ASM1735557v1.augustus.gtf.gz -Histoplasma capsulatum G217B GenBank GCA_017607445.1 yes 0 11 0 Histoplasma capsulatum G217B FungiDB 2902605 GCA_017607445.1_ASM1760744v1 GCA_017607445.1 False Histoplasma ohiense ascomycetes H.ohiense (G217B 2021) https://genome.ucsc.edu/h/GCA_017607445.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/607/445/GCA_017607445.1/genes/GCA_017607445.1_ASM1760744v1.augustus.gtf.gz -Blastomyces dermatitidis ATCC 26199 INSDC GCA_000166155.1 no 0 3282 0 Blastomyces dermatitidis ATCC 26199 FungiDB 447095 GCA_000166155.1_BD_ATCC26199_V2 GCA_000166155.1 False Blastomyces dermatitidis ATCC 26199 ascomycetes B.dermatitidis (ATCC 26199 2010) https://genome.ucsc.edu/h/GCA_000166155.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/166/155/GCA_000166155.1/genes/GCA_000166155.1_BD_ATCC26199_V2.augustus.gtf.gz -Aspergillus fumigatus A1163 GenBank GCA_000150145.1 no 0 55 0 Aspergillus fumigatus A1163 FungiDB 451804 GCA_000150145.1_ASM15014v1 GCA_000150145.1 False Aspergillus fumigatus A1163 ascomycetes A.fumigatus (A1163 2007) https://genome.ucsc.edu/h/GCA_000150145.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/145/GCA_000150145.1/genes/GCA_000150145.1_ASM15014v1.augustus.gtf.gz -Coccidioides posadasii RMSCC 3488 GenBank GCA_000150055.1 no 0 6 0 Coccidioides posadasii RMSCC 3488 FungiDB 454284 GCA_000150055.1_ASM15005v1 GCA_000150055.1 False Coccidioides posadasii RMSCC 3488 ascomycetes C.posadasii (RMSCC 3488 2007) https://genome.ucsc.edu/h/GCA_000150055.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/055/GCA_000150055.1/genes/GCA_000150055.1_ASM15005v1.augustus.gtf.gz -Coccidioides immitis RMSCC 3703 GenBank GCA_000150085.1 no 0 286 0 Coccidioides immitis RMSCC 3703 FungiDB 454286 GCA_000150085.1_ASM15008v1 GCA_000150085.1 False Coccidioides immitis RMSCC 3703 ascomycetes C.immitis (RMSCC 3703 2007) https://genome.ucsc.edu/h/GCA_000150085.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/085/GCA_000150085.1/genes/GCA_000150085.1_ASM15008v1.augustus.gtf.gz -Coccidioides posadasii RMSCC 2133 GenBank GCA_000150185.1 no 0 53 0 Coccidioides posadasii RMSCC 2133 FungiDB 469470 GCA_000150185.1_ASM15018v1 GCA_000150185.1 False Coccidioides posadasii RMSCC 2133 ascomycetes C.posadasii (RMSCC 2133 2007) https://genome.ucsc.edu/h/GCA_000150185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/185/GCA_000150185.1/genes/GCA_000150185.1_ASM15018v1.augustus.gtf.gz -Coccidioides posadasii RMSCC 3700 GenBank GCA_000150215.1 no 0 241 0 Coccidioides posadasii RMSCC 3700 FungiDB 469471 GCA_000150215.1_ASM15021v1 GCA_000150215.1 False Coccidioides posadasii RMSCC 3700 ascomycetes C.posadasii (RMSCC 3700 2007) https://genome.ucsc.edu/h/GCA_000150215.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/215/GCA_000150215.1/genes/GCA_000150215.1_ASM15021v1.augustus.gtf.gz -Coccidioides posadasii CPA 0001 GenBank GCA_000150245.1 no 0 255 0 Coccidioides posadasii CPA 0001 FungiDB 469472 GCA_000150245.1_ASM15024v1 GCA_000150245.1 False Coccidioides posadasii CPA 0001 ascomycetes C.posadasii (CPA 0001 2007) https://genome.ucsc.edu/h/GCA_000150245.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/245/GCA_000150245.1/genes/GCA_000150245.1_ASM15024v1.augustus.gtf.gz -Enterocytozoon bieneusi H348 GenBank GCA_000209485.1 yes 1730 3 0 Enterocytozoon bieneusi H348 MicrosporidiaDB 481877 GCF_000209485.1_ASM20948v1 GCA_000209485.1 GCF_000209485.1 True Enterocytozoon bieneusi H348 microsporidians E.bieneusi (H348 2009) https://genome.ucsc.edu/h/GCF_000209485.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/209/485/GCA_000209485.1/genes/GCA_000209485.1_ASM20948v1.augustus.gtf.gz -Paracoccidioides brasiliensis Pb03 GenBank GCA_000150475.2 yes 0 65 0 Paracoccidioides brasiliensis Pb03 FungiDB 482561 GCA_000150475.2_Paracocci_br_Pb03_V2 GCA_000150475.2 False Paracoccidioides brasiliensis Pb03 ascomycetes P.brasiliensis (Pb03 2014) https://genome.ucsc.edu/h/GCA_000150475.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/475/GCA_000150475.2/genes/GCA_000150475.2_Paracocci_br_Pb03_V2.augustus.gtf.gz -Schizosaccharomyces octosporus yFS286 GenBank GCA_000150505.2 yes 0 5 0 Schizosaccharomyces octosporus yFS286 FungiDB 483514 GCF_000150505.1_SO6 GCA_000150505.2 GCF_000150505.1 True Schizosaccharomyces octosporus yFS286 ascomycetes S.octosporus yFS286 https://genome.ucsc.edu/h/GCF_000150505.1 -Babesia bovis T2Bo GenBank GCA_000165395.2 yes 0 3 3 Babesia bovis T2Bo PiroplasmaDB 484906 GCF_000165395.2_ASM16539v2 GCA_000165395.2 GCF_000165395.2 False Babesia bovis T2Bo apicomplexans B.bovis (T2Bo 2021) https://genome.ucsc.edu/h/GCF_000165395.2 -Coccidioides posadasii RMSCC 1037 GenBank GCA_000150555.1 no 0 633 0 Coccidioides posadasii RMSCC 1037 FungiDB 490065 GCA_000150555.1_ASM15055v1 GCA_000150555.1 False Coccidioides posadasii RMSCC 1037 ascomycetes C.posadasii (RMSCC 1037 2008) https://genome.ucsc.edu/h/GCA_000150555.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/555/GCA_000150555.1/genes/GCA_000150555.1_ASM15055v1.augustus.gtf.gz -Coccidioides posadasii RMSCC 1038 GenBank GCA_000150585.1 no 0 551 0 Coccidioides posadasii RMSCC 1038 FungiDB 490066 GCA_000150585.1_ASM15058v1 GCA_000150585.1 False Coccidioides posadasii RMSCC 1038 ascomycetes C.posadasii (RMSCC 1038 2008) https://genome.ucsc.edu/h/GCA_000150585.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/585/GCA_000150585.1/genes/GCA_000150585.1_ASM15058v1.augustus.gtf.gz -Coccidioides posadasii CPA 0020 GenBank GCA_000150615.1 no 0 620 0 Coccidioides posadasii CPA 0020 FungiDB 490068 GCA_000150615.1_ASM15061v1 GCA_000150615.1 False Coccidioides posadasii CPA 0020 ascomycetes C.posadasii (CPA 0020 2008) https://genome.ucsc.edu/h/GCA_000150615.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/615/GCA_000150615.1/genes/GCA_000150615.1_ASM15061v1.augustus.gtf.gz -Coccidioides posadasii CPA 0066 GenBank GCA_000150645.1 no 0 473 0 Coccidioides posadasii CPA 0066 FungiDB 490069 GCA_000150645.1_ASM15064v1 GCA_000150645.1 False Coccidioides posadasii CPA 0066 ascomycetes C.posadasii (CPA 0066 2008) https://genome.ucsc.edu/h/GCA_000150645.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/645/GCA_000150645.1/genes/GCA_000150645.1_ASM15064v1.augustus.gtf.gz -Penicillium rubens Wisconsin 54-1255 GenBank GCA_000226395.1 yes 0 49 0 Penicillium rubens Wisconsin 54-1255 FungiDB 500485 GCF_000226395.1_PenChr_Nov2007 GCA_000226395.1 GCF_000226395.1 True Penicillium rubens Wisconsin 54-1255 ascomycetes P.rubens (Wisconsin 54-1255 2008 refseq) https://genome.ucsc.edu/h/GCF_000226395.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/226/395/GCA_000226395.1/genes/GCA_000226395.1_PenChr_Nov2007.augustus.gtf.gz -Paracoccidioides lutzii Pb01 GenBank GCA_000150705.2 yes 0 110 0 Paracoccidioides lutzii Pb01 FungiDB 502779 GCF_000150705.2_Paracocci_br_Pb01_V2 GCA_000150705.2 GCF_000150705.2 True Paracoccidioides lutzii Pb01 ascomycetes P.lutzii Pb01 https://genome.ucsc.edu/h/GCF_000150705.2 -Paracoccidioides brasiliensis Pb18 GenBank GCA_000150735.2 no 0 57 0 Paracoccidioides brasiliensis Pb18 FungiDB 502780 GCF_000150735.1_Paracocci_br_Pb18_V2 GCA_000150735.2 GCF_000150735.1 True Paracoccidioides brasiliensis Pb18 ascomycetes P.brasiliensis Pb18 https://genome.ucsc.edu/h/GCF_000150735.1 -Toxoplasma gondii GT1 GenBank GCA_000149715.2 no 2034 0 14 Toxoplasma gondii GT1 ToxoDB 507601 GCA_000149715.2_TGGT1 GCA_000149715.2 False Toxoplasma gondii GT1 apicomplexans T.gondii (GT1 2013) https://genome.ucsc.edu/h/GCA_000149715.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/149/715/GCA_000149715.2/genes/GCA_000149715.2_TGGT1.augustus.gtf.gz -Toxoplasma gondii ME49 GenBank GCF_000006565.2 yes 0 2248 14 Toxoplasma gondii ME49 ToxoDB 508771 GCF_000006565.2_TGA4 GCA_000006565.2 GCF_000006565.2 False Toxoplasma gondii ME49 Toxoplasma gondii (ME49 2013) https://genome.ucsc.edu/h/GCF_000006565.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/006/565/GCF_000006565.2/genes/GCF_000006565.2_TGA4.ncbiRefSeq.gtf.gz -Aspergillus oryzae RIB40 GenBank GCA_000184455.3 yes 3 0 8 Aspergillus oryzae RIB40 FungiDB 510516 GCF_000184455.2_ASM18445v3 GCA_000184455.3 GCF_000184455.2 True Aspergillus oryzae RIB40 ascomycetes A.oryzae RIB40 https://genome.ucsc.edu/h/GCF_000184455.2 -Neurospora tetrasperma FGSC 2508 GenBank GCA_000213175.1 yes 0 81 0 Neurospora tetrasperma FGSC 2508 FungiDB 510951 GCF_000213175.1_v2.0 GCA_000213175.1 GCF_000213175.1 True Neurospora tetrasperma FGSC 2508 ascomycetes N.tetrasperma FGSC 2508 https://genome.ucsc.edu/h/GCF_000213175.1 -Podospora anserina S mat+ INSDC GCA_000226545.1 yes 0 33 0 Podospora anserina S mat+ FungiDB 515849 GCF_000226545.1_ASM22654v1 GCA_000226545.1 GCF_000226545.1 True Podospora anserina S mat ascomycetes P.anserina S mat+ https://genome.ucsc.edu/h/GCF_000226545.1 -Nannizzia gypsea CBS 118893 INSDC GCA_000150975.2 yes 0 18 0 Nannizzia gypsea CBS 118893 FungiDB 535722 GCF_000150975.2_MS_CBS118893 GCA_000150975.2 GCF_000150975.2 True Nannizzia gypsea CBS 118893 ascomycetes N.gypsea CBS 118893 https://genome.ucsc.edu/h/GCF_000150975.2 -Histoplasma capsulatum H88 GenBank GCA_017310615.1 no 0 0 6 Histoplasma capsulatum H88 FungiDB 544711 GCA_017310615.1_ASM1731061v1 GCA_017310615.1 False Histoplasma capsulatum var. duboisii H88 ascomycetes H.capsulatum var. duboisii (H88 2021) https://genome.ucsc.edu/h/GCA_017310615.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/310/615/GCA_017310615.1/genes/GCA_017310615.1_ASM1731061v1.augustus.gtf.gz -Histoplasma capsulatum H143 GenBank GCA_000151035.1 no 0 48 0 Histoplasma capsulatum H143 FungiDB 544712 GCA_000151035.1_ASM15103v1 GCA_000151035.1 False Histoplasma capsulatum H143 ascomycetes H.capsulatum (H143 2009) https://genome.ucsc.edu/h/GCA_000151035.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/151/035/GCA_000151035.1/genes/GCA_000151035.1_ASM15103v1.augustus.gtf.gz -Microsporum canis CBS 113480 INSDC GCA_000151145.1 yes 0 16 0 Microsporum canis CBS 113480 FungiDB 554155 GCF_000151145.1_ASM15114v1 GCA_000151145.1 GCF_000151145.1 True Microsporum canis CBS 113480 ascomycetes M.canis CBS 113480 https://genome.ucsc.edu/h/GCF_000151145.1 -Saccharomyces cerevisiae S288C GenBank GCA_000146045.2 yes 0 0 16 Saccharomyces cerevisiae S288C FungiDB 559292 GCF_000146045.2_R64 GCA_000146045.2 GCF_000146045.2 False Saccharomyces cerevisiae S288C baker's yeast S288C (2014) https://genome.ucsc.edu/h/GCF_000146045.2 -Blastomyces dermatitidis ER-3 INSDC GCA_000003525.2 yes 0 25 0 Blastomyces dermatitidis ER-3 FungiDB 559297 GCF_000003525.1_BD_ER3_V1 GCA_000003525.2 GCF_000003525.1 True Blastomyces dermatitidis ER-3 ascomycetes B.dermatitidis (ER-3 2009 refseq) https://genome.ucsc.edu/h/GCF_000003525.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/003/525/GCA_000003525.2/genes/GCA_000003525.2_BD_ER3_V1.augustus.gtf.gz -Blastomyces gilchristii SLH14081 INSDC GCA_000003855.2 yes 0 100 0 Blastomyces gilchristii SLH14081 FungiDB 559298 GCF_000003855.2_BD_SLH14081_V1 GCA_000003855.2 GCF_000003855.2 True Blastomyces gilchristii SLH14081 ascomycetes B.gilchristii (SLH14081 2009 refseq) https://genome.ucsc.edu/h/GCF_000003855.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/003/855/GCA_000003855.2/genes/GCA_000003855.2_BD_SLH14081_V1.augustus.gtf.gz -Trichophyton rubrum CBS 118892 INSDC GCA_000151425.1 yes 0 35 0 Trichophyton rubrum CBS 118892 FungiDB 559305 GCF_000151425.1_ASM15142v1 GCA_000151425.1 GCF_000151425.1 True Trichophyton rubrum CBS 118892 ascomycetes T.rubrum CBS 118892 https://genome.ucsc.edu/h/GCF_000151425.1 -Hyaloperonospora arabidopsidis Emoy2 GenBank GCA_000173235.2 yes 0 3044 0 Hyaloperonospora arabidopsidis Emoy2 FungiDB 559515 GCA_000173235.2_HyaAraEmoy2_2.0 GCA_000173235.2 False Hyaloperonospora arabidopsidis Emoy2 downy mildews (Emoy2 2012) https://genome.ucsc.edu/h/GCA_000173235.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/173/235/GCA_000173235.2/genes/GCA_000173235.2_HyaAraEmoy2_2.0.augustus.gtf.gz -Trichophyton equinum CBS 127.97 INSDC GCA_000151175.1 yes 0 123 0 Trichophyton equinum CBS 127.97 FungiDB 559882 GCA_000151175.1_ASM15117v1 GCA_000151175.1 False Trichophyton equinum CBS 127.97 ascomycetes T.equinum (CBS 127.97 2008) https://genome.ucsc.edu/h/GCA_000151175.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/151/175/GCA_000151175.1/genes/GCA_000151175.1_ASM15117v1.augustus.gtf.gz -Neospora caninum Liverpool GenBank GCA_000208865.2 yes 52 0 14 Neospora caninum Liverpool ToxoDB 572307 GCF_000208865.1_ASM20886v2 GCA_000208865.2 GCF_000208865.1 True Neospora caninum Liverpool apicomplexans N.caninum (Liverpool 2011) https://genome.ucsc.edu/h/GCF_000208865.1 -Plasmodium falciparum Dd2 GenBank GCA_900632045.1 no 0 0 14 Plasmodium falciparum Dd2 PlasmoDB 5833 GCA_900632045.1_PfDd2-3 GCA_900632045.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632045.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/045/GCA_900632045.1/genes/GCA_900632045.1_PfDd2-3.augustus.gtf.gz -Thermothelomyces thermophilus ATCC 42464 INSDC GCA_000226095.1 yes 0 0 7 Thermothelomyces thermophilus ATCC 42464 FungiDB 573729 GCF_000226095.1_ASM22609v1 GCA_000226095.1 GCF_000226095.1 True Thermothelomyces thermophilus ATCC 42464 ascomycetes T.thermophilus ATCC 42464 https://genome.ucsc.edu/h/GCF_000226095.1 -Candida dubliniensis CD36 INSDC GCA_000026945.1 yes 0 0 8 Candida dubliniensis CD36 FungiDB 573826 GCF_000026945.1_ASM2694v1 GCA_000026945.1 GCF_000026945.1 True Candida dubliniensis CD36 budding yeast C.dubliniensis CD36 https://genome.ucsc.edu/h/GCF_000026945.1 -Candida parapsilosis CDC317 GenBank GCA_000182765.2 yes 0 0 8 Candida parapsilosis CDC317 FungiDB 5480 GCF_000182765.1_ASM18276v2 GCA_000182765.2 GCF_000182765.1 False Candida parapsilosis budding yeast C.parapsilosis https://genome.ucsc.edu/h/GCF_000182765.1 -Tremella mesenterica DSM 1558 GenBank GCA_000271645.1 yes 0 45 0 Tremella mesenterica DSM 1558 FungiDB 578456 GCF_000271645.1_Treme1 GCA_000271645.1 GCF_000271645.1 True Tremella mesenterica DSM 1558 witches' butter https://genome.ucsc.edu/h/GCF_000271645.1 -Schizophyllum commune H4-8 INSDC GCA_000143185.2 yes 0 25 0 Schizophyllum commune H4-8 FungiDB 578458 GCF_000143185.2_Schco3 GCA_000143185.2 GCF_000143185.2 True Schizophyllum commune H4-8 basidiomycetes S.commune (v2 H4-8 2022) https://genome.ucsc.edu/h/GCF_000143185.2 -Nosema ceranae BRL01 GenBank GCA_000182985.1 yes 5465 0 0 Nosema ceranae BRL01 MicrosporidiaDB 578460 GCF_000182985.1_ASM18298v1 GCA_000182985.1 GCF_000182985.1 True Nosema ceranae BRL01 microsporidians N.ceranae (BRL01 2009) https://genome.ucsc.edu/h/GCF_000182985.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/182/985/GCA_000182985.1/genes/GCA_000182985.1_ASM18298v1.augustus.gtf.gz -Nosema bombycis CQ1 GenBank GCA_000383075.1 yes 0 1607 0 Nosema bombycis CQ1 MicrosporidiaDB 578461 GCA_000383075.1_NosBomCQ1_v1.0 GCA_000383075.1 False Nosema bombycis CQ1 microsporidians N.bombycis (CQ1 2013) https://genome.ucsc.edu/h/GCA_000383075.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/383/075/GCA_000383075.1/genes/GCA_000383075.1_NosBomCQ1_v1.0.augustus.gtf.gz -Allomyces macrogynus ATCC 38327 GenBank GCA_000151295.1 yes 0 101 0 Allomyces macrogynus ATCC 38327 FungiDB 578462 GCA_000151295.1_A_macrogynus_V3 GCA_000151295.1 False Allomyces macrogynus ATCC 38327 blastocladiomycotan A.macrogynus (ATCC 38327 2010) https://genome.ucsc.edu/h/GCA_000151295.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/151/295/GCA_000151295.1/genes/GCA_000151295.1_A_macrogynus_V3.augustus.gtf.gz -Plasmodium berghei ANKA GenBank GCA_900002375.2 yes 5 0 14 Plasmodium berghei ANKA PlasmoDB 5823 GCF_900002375.2_GCA_900002375 GCA_900002375.2 GCF_900002375.2 False Plasmodium berghei ANKA apicomplexans P.berghei (ANKA 2019) https://genome.ucsc.edu/h/GCF_900002375.2 -Plasmodium falciparum NF54 INSDC GCA_009761475.1 no 0 28 0 Plasmodium falciparum NF54 PlasmoDB 5833 GCA_009761475.1_NF54_v1 GCA_009761475.1 False Plasmodium falciparum malaria parasite P. falciparum (NF54 2019) https://genome.ucsc.edu/h/GCA_009761475.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/761/475/GCA_009761475.1/genes/GCA_009761475.1_NF54_v1.augustus.gtf.gz -Plasmodium knowlesi strain H GenBank GCA_000006355.3 yes 148 0 14 Plasmodium knowlesi strain H PlasmoDB 5851 GCF_000006355.2_GCA_000006355.2 GCA_000006355.3 GCF_000006355.2 False Plasmodium knowlesi strain H apicomplexans P.knowlesi strain (H 2020) https://genome.ucsc.edu/h/GCF_000006355.2 -Giardia Assemblage B isolate GS GenBank GCA_000182405.1 no 2931 0 0 Giardia Assemblage B isolate GS GiardiaDB 598745 GCA_000182405.1_ASM18240v1 GCA_000182405.1 False Giardia intestinalis ATCC 50581 diplomonads (GS/M clone H7 2009) https://genome.ucsc.edu/h/GCA_000182405.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/182/405/GCA_000182405.1/genes/GCA_000182405.1_ASM18240v1.augustus.gtf.gz -Aspergillus carbonarius ITEM 5010 GenBank GCA_001990825.1 yes 0 829 0 Aspergillus carbonarius ITEM 5010 FungiDB 602072 GCA_001990825.1_Aspca3 GCA_001990825.1 False Aspergillus carbonarius ITEM 5010 ascomycetes A.carbonaris (ITEM 5010 2017) https://genome.ucsc.edu/h/GCA_001990825.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/990/825/GCA_001990825.1/genes/GCA_001990825.1_Aspca3.augustus.gtf.gz -Puccinia triticina 1-1 BBBD Race 1 GenBank GCA_000151525.2 yes 14818 0 0 Puccinia triticina 1-1 BBBD Race 1 FungiDB 630390 GCA_000151525.2_P_triticina_1_1_V2 GCA_000151525.2 False Puccinia triticina 1-1 BBBD Race 1 wheat leaf rust (1-1 BBBD Race 1 2016) https://genome.ucsc.edu/h/GCA_000151525.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/151/525/GCA_000151525.2/genes/GCA_000151525.2_P_triticina_1_1_V2.augustus.gtf.gz -Gaeumannomyces tritici R3-111a-1 INSDC GCA_000145635.1 yes 0 513 0 Gaeumannomyces tritici R3-111a-1 FungiDB 644352 GCF_000145635.1_Gae_graminis_V2 GCA_000145635.1 GCF_000145635.1 True Gaeumannomyces tritici R3-111a-1 ascomycetes G.tritici R3-111a-1 https://genome.ucsc.edu/h/GCF_000145635.1 -Magnaporthiopsis poae ATCC 64411 INSDC GCA_000193285.1 yes 0 205 0 Magnaporthiopsis poae ATCC 64411 FungiDB 644358 GCA_000193285.1_Mag_poae_ATCC_64411_V1 GCA_000193285.1 False Magnaporthiopsis poae ATCC 64411 ascomycetes M.poae (ATCC 64411 2011) https://genome.ucsc.edu/h/GCA_000193285.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/193/285/GCA_000193285.1/genes/GCA_000193285.1_Mag_poae_ATCC_64411_V1.augustus.gtf.gz -Colletotrichum graminicola M1.001 INSDC GCA_000149035.1 yes 0 653 0 Colletotrichum graminicola M1.001 FungiDB 645133 GCF_000149035.1_C_graminicola_M1_001_V1 GCA_000149035.1 GCF_000149035.1 True Colletotrichum graminicola M1.001 ascomycetes C.graminicola M1.001 https://genome.ucsc.edu/h/GCF_000149035.1 -Spizellomyces punctatus DAOM BR117 GenBank GCA_000182565.2 yes 0 38 0 Spizellomyces punctatus DAOM BR117 FungiDB 645134 GCF_000182565.1_S_punctatus_V1 GCA_000182565.2 GCF_000182565.1 True Spizellomyces punctatus DAOM BR117 chytrids S.punctatus DAOM BR117 https://genome.ucsc.edu/h/GCF_000182565.1 -Trichophyton tonsurans CBS 112818 INSDC GCA_000151455.1 yes 0 110 0 Trichophyton tonsurans CBS 112818 FungiDB 647933 GCA_000151455.1_ASM15145v1 GCA_000151455.1 False Trichophyton tonsurans CBS 112818 ascomycetes T.tonsurans (CBS 112818 2009) https://genome.ucsc.edu/h/GCA_000151455.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/151/455/GCA_000151455.1/genes/GCA_000151455.1_ASM15145v1.augustus.gtf.gz -Pseudogymnoascus destructans 20631-21 INSDC GCA_000184105.1 yes 0 1846 0 Pseudogymnoascus destructans 20631-21 FungiDB 658429 GCF_000184105.1_Geom_destructans_V1 GCA_000184105.1 GCF_000184105.1 True Pseudogymnoascus destructans 20631-21 ascomycetes P.destructans (20631-21 2010) https://genome.ucsc.edu/h/GCF_000184105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/184/105/GCA_000184105.1/genes/GCA_000184105.1_Geom_destructans_V1.augustus.gtf.gz -Giardia Assemblage E isolate P15 GenBank GCA_000182665.1 no 820 0 0 Giardia Assemblage E isolate P15 GiardiaDB 658858 GCA_000182665.1_ASM18266v1 GCA_000182665.1 False Giardia lamblia P15 diplomonads (P15 2010) https://genome.ucsc.edu/h/GCA_000182665.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/182/665/GCA_000182665.1/genes/GCA_000182665.1_ASM18266v1.augustus.gtf.gz -Fusarium oxysporum f. sp. conglutinans Fo5176 INSDC GCA_014154955.1 no 0 4 15 Fusarium oxysporum f. sp. conglutinans Fo5176 FungiDB 100902 GCA_014154955.1_SMRT_HiC_Fo5176 GCA_014154955.1 False Fusarium oxysporum f. sp. conglutinans ascomycetes F.oxysporum f. sp. conglutinans (Fo5176 2020) https://genome.ucsc.edu/h/GCA_014154955.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/154/955/GCA_014154955.1/genes/GCA_014154955.1_SMRT_HiC_Fo5176.augustus.gtf.gz -Fusarium oxysporum Fo47 GenBank GCA_000271705.2 no 0 124 0 Fusarium oxysporum Fo47 FungiDB 660027 GCA_000271705.2_FO_Fo47_V1 GCA_000271705.2 False Fusarium oxysporum Fo47 ascomycetes F.oxysporum (Fo47 2014) https://genome.ucsc.edu/h/GCA_000271705.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/271/705/GCA_000271705.2/genes/GCA_000271705.2_FO_Fo47_V1.augustus.gtf.gz -Fusarium oxysporum NRRL 32931 GenBank GCA_000271745.2 no 0 168 0 Fusarium oxysporum NRRL 32931 FungiDB 660029 GCF_000271745.1_FO_FOSC_3_a_V1 GCA_000271745.2 GCF_000271745.1 True Fusarium oxysporum NRRL 32931 ascomycetes F.oxysporum (NRRL 32931 2014 refseq) https://genome.ucsc.edu/h/GCF_000271745.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/271/745/GCA_000271745.2/genes/GCA_000271745.2_FO_FOSC_3_a_V1.augustus.gtf.gz -Fusarium vanettenii 77-13-4 INSDC GCA_000151355.1 yes 0 209 0 Fusarium vanettenii 77-13-4 FungiDB 660122 GCF_000151355.1_v2.0 GCA_000151355.1 GCF_000151355.1 True Fusarium vanettenii 77-13-4 ascomycetes F.vanettenii 77-13-4 https://genome.ucsc.edu/h/GCF_000151355.1 -Sclerotinia sclerotiorum 1980 UF-70 GenBank GCA_001857865.1 yes 0 0 16 Sclerotinia sclerotiorum 1980 UF-70 FungiDB 665079 GCA_001857865.1_ASM185786v1 GCA_001857865.1 False Sclerotinia sclerotiorum 1980 UF-70 ascomycetes S.sclerotiorum UF-70 (1980 2016) https://genome.ucsc.edu/h/GCA_001857865.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/857/865/GCA_001857865.1/genes/GCA_001857865.1_ASM185786v1.augustus.gtf.gz -Trypanosoma brucei gambiense DAL972 GenBank GCA_000210295.1 no 0 0 11 Trypanosoma brucei gambiense DAL972 TriTrypDB 679716 GCF_000210295.1_ASM21029v1 GCA_000210295.1 GCF_000210295.1 True Trypanosoma brucei gambiense DAL972 Trypanosoma brucei gambiense (Dal972 MHOM/CI/86/DAL972 2009 kinetoplastids) https://genome.ucsc.edu/h/GCF_000210295.1 -Aspergillus aculeatus ATCC 16872 GenBank GCA_001890905.1 yes 0 660 0 Aspergillus aculeatus ATCC 16872 FungiDB 690307 GCF_001890905.1_Aspac1 GCA_001890905.1 GCF_001890905.1 True Aspergillus aculeatus ATCC 16872 ascomycetes A.aculeatus ATCC 16872 https://genome.ucsc.edu/h/GCF_001890905.1 -Saprolegnia parasitica CBS 223.65 GenBank GCA_000151545.2 yes 0 1442 0 Saprolegnia parasitica CBS 223.65 FungiDB 695850 GCF_000151545.1_ASM15154v2 GCA_000151545.2 GCF_000151545.1 True Saprolegnia parasitica CBS 223.65 oomycetes (CBS 223.65 2014) https://genome.ucsc.edu/h/GCF_000151545.1 -Naegleria gruberi strain NEG-M INSDC GCA_000004985.1 yes 0 784 0 Naegleria gruberi strain NEG-M AmoebaDB 5762 GCF_000004985.1_V1.0 GCA_000004985.1 GCF_000004985.1 True Naegleria gruberi N.gruberi (NEG-M 2010) https://genome.ucsc.edu/h/GCF_000004985.1 -Rhizophagus irregularis DAOM 181602=DAOM 197198 GenBank GCA_020716725.1 yes 0 0 33 Rhizophagus irregularis DAOM 181602=DAOM 197198 FungiDB 588596 GCA_020716725.1_ASM2071672v1 GCA_020716725.1 False Rhizophagus irregularis glomeromycetes (DAOM-197198 2021) https://genome.ucsc.edu/h/GCA_020716725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/716/725/GCA_020716725.1/genes/GCA_020716725.1_ASM2071672v1.augustus.gtf.gz -Melampsora larici-populina 98AG31 GenBank GCA_000204055.1 yes 0 462 0 Melampsora larici-populina 98AG31 FungiDB 747676 GCF_000204055.1_v1.0 GCA_000204055.1 GCF_000204055.1 True Melampsora larici-populina 98AG31 rust fungi M.larici-populina 98AG31 https://genome.ucsc.edu/h/GCF_000204055.1 -Mucor lusitanicus CBS 277.49 GenBank GCA_001638945.1 yes 0 21 0 Mucor lusitanicus CBS 277.49 FungiDB 747725 GCA_001638945.1_Mucci2 GCA_001638945.1 False Mucor lusitanicus CBS 277.49 fungi M.lusitanicus (CBS 277.49 2016) https://genome.ucsc.edu/h/GCA_001638945.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/638/945/GCA_001638945.1/genes/GCA_001638945.1_Mucci2.augustus.gtf.gz -Colletotrichum higginsianum IMI 349063 INSDC GCA_001672515.1 yes 0 14 11 Colletotrichum higginsianum IMI 349063 FungiDB 759273 GCF_001672515.1_ASM167251v1 GCA_001672515.1 GCF_001672515.1 True Colletotrichum higginsianum IMI 349063 ascomycetes C.higginsianum IMI 349063 https://genome.ucsc.edu/h/GCF_001672515.1 -Phytophthora parasitica INRA-310 GenBank GCA_000247585.2 yes 0 708 0 Phytophthora parasitica INRA-310 FungiDB 761204 GCF_000247585.1_PP_INRA-310_V2 GCA_000247585.2 GCF_000247585.1 True Phytophthora nicotianae INRA-310 black shank of tobacco agent (INRA-310 2013) https://genome.ucsc.edu/h/GCF_000247585.1 -Phycomyces blakesleeanus NRRL 1555(-) GenBank GCA_001638985.2 yes 0 80 0 Phycomyces blakesleeanus NRRL 1555(-) FungiDB 763407 GCF_001638985.1_Phybl2 GCA_001638985.2 GCF_001638985.1 True Phycomyces blakesleeanus NRRL 1555- fungi P.blakesleeanus NRRL 1555(-) https://genome.ucsc.edu/h/GCF_001638985.1 -Phytophthora capsici LT1534 INSDC GCA_016618375.1 yes 0 782 0 Phytophthora capsici LT1534 FungiDB 4784 GCA_016618375.1_Pcap_4.1 GCA_016618375.1 False Phytophthora capsici downy mildews (LT1534-B 2021) https://genome.ucsc.edu/h/GCA_016618375.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/016/618/375/GCA_016618375.1/genes/GCA_016618375.1_Pcap_4.1.augustus.gtf.gz -Aspergillus brasiliensis CBS 101740 GenBank GCA_001889945.1 yes 0 103 0 Aspergillus brasiliensis CBS 101740 FungiDB 767769 GCA_001889945.1_Aspbr1 GCA_001889945.1 GCF_001889945.1 True Aspergillus brasiliensis CBS 101740 ascomycetes A.brasiliensis (CBS 101740 2016) https://genome.ucsc.edu/h/GCA_001889945.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/889/945/GCA_001889945.1/genes/GCA_001889945.1_Aspbr1.augustus.gtf.gz -Aspergillus tubingensis CBS 134.48 GenBank GCA_001890745.1 yes 0 33 0 Aspergillus tubingensis CBS 134.48 FungiDB 767770 GCA_001890745.1_Asptu1 GCA_001890745.1 False Aspergillus tubingensis CBS 134.48 ascomycetes A.tubingensis (CBS 134.48 2016) https://genome.ucsc.edu/h/GCA_001890745.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/890/745/GCA_001890745.1/genes/GCA_001890745.1_Asptu1.augustus.gtf.gz -Sordaria macrospora k-hell GenBank GCF_000182805.3 yes 0 1212 0 Sordaria macrospora k-hell FungiDB 771870 GCF_000182805.3_ASM18280v2 GCA_000182805.2 GCF_000182805.3 False Sordaria macrospora k-hell ascomycetes S.macrospora (v3 k-hell 2012) https://genome.ucsc.edu/h/GCF_000182805.3 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/182/805/GCF_000182805.3/genes/GCF_000182805.3_ASM18280v2.ncbiRefSeq.gtf.gz -Cenococcum geophilum 1.58 GenBank GCA_001692895.1 yes 0 268 0 Cenococcum geophilum 1.58 FungiDB 794803 GCA_001692895.1_Cenococcum_geophilum_1.58_v2.0 GCA_001692895.1 GCF_001692895.1 True Cenococcum geophilum 1.58 ascomycetes C.geophilum (1.58 2016) https://genome.ucsc.edu/h/GCA_001692895.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/692/895/GCA_001692895.1/genes/GCA_001692895.1_Cenococcum_geophilum_1.58_v2.0.augustus.gtf.gz -Exophiala dermatitidis NIH/UT8656 INSDC GCA_000230625.1 yes 0 10 0 Exophiala dermatitidis NIH/UT8656 FungiDB 858893 GCF_000230625.1_Exop_derm_V1 GCA_000230625.1 GCF_000230625.1 True Exophiala dermatitidis NIH/UT8656 ascomycetes E.dermatitidis NIH/UT8656 https://genome.ucsc.edu/h/GCF_000230625.1 -Leishmania major strain LV39c5 GenBank GCA_000331345.1 no 0 773 36 Leishmania major strain LV39c5 TriTrypDB 860569 GCA_000331345.1_Leishmania_major_LV39c5-1.0.1 GCA_000331345.1 False Leishmania major strain LV39c5 Leishmania major strain (LV39c5 2013) https://genome.ucsc.edu/h/GCA_000331345.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/331/345/GCA_000331345.1/genes/GCA_000331345.1_Leishmania_major_LV39c5-1.0.1.augustus.gtf.gz -Leishmania major strain SD 75.1 GenBank GCA_000250755.2 no 0 36 0 Leishmania major strain SD 75.1 TriTrypDB 860570 GCA_000250755.2_Leishmania_major_SD_75.1-1.1.1 GCA_000250755.2 False Leishmania major strain SD 75.1 Leishmania major strain (SD 75.1 2012) https://genome.ucsc.edu/h/GCA_000250755.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/250/755/GCA_000250755.2/genes/GCA_000250755.2_Leishmania_major_SD_75.1-1.1.1.augustus.gtf.gz -Theileria orientalis strain Shintoku GenBank GCA_000740895.1 yes 0 0 4 Theileria orientalis strain Shintoku PiroplasmaDB 869250 GCF_000740895.1_ASM74089v1 GCA_000740895.1 GCF_000740895.1 True Theileria orientalis strain Shintoku apicomplexans T.orientalis strain (Shintoku 2012) https://genome.ucsc.edu/h/GCF_000740895.1 -Encephalitozoon intestinalis ATCC 50506 GenBank GCA_000146465.1 yes 0 0 11 Encephalitozoon intestinalis ATCC 50506 MicrosporidiaDB 876142 GCF_000146465.1_ASM14646v1 GCA_000146465.1 GCF_000146465.1 True Encephalitozoon intestinalis ATCC 50506 microsporidians E.intestinalis ATCC 50506 https://genome.ucsc.edu/h/GCF_000146465.1 -Epichloe festucae Fl1 INSDC GCA_003814445.1 yes 0 0 7 Epichloe festucae Fl1 FungiDB 877507 GCA_003814445.1_ASM381444v1 GCA_003814445.1 False Epichloe festucae Fl1 ascomycetes E.festucae (Fl1 2018) https://genome.ucsc.edu/h/GCA_003814445.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/814/445/GCA_003814445.1/genes/GCA_003814445.1_ASM381444v1.augustus.gtf.gz -Nematocida parisii ERTm1 GenBank GCA_000250985.1 yes 0 65 0 Nematocida parisii ERTm1 MicrosporidiaDB 881290 GCF_000250985.1_Nema_parisii_ERTm1_V3 GCA_000250985.1 GCF_000250985.1 True Nematocida parisii ERTm1 microsporidians N.parisii ERTm1 https://genome.ucsc.edu/h/GCF_000250985.1 -Entamoeba histolytica DS4-868 INSDC GCA_018466815.1 no 0 1177 0 Entamoeba histolytica DS4-868 AmoebaDB 885310 GCA_018466815.1_ASM1846681v1 GCA_018466815.1 False Entamoeba histolytica DS4-868 E.histolytica (DS4-868 2021) https://genome.ucsc.edu/h/GCA_018466815.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/018/466/815/GCA_018466815.1/genes/GCA_018466815.1_ASM1846681v1.augustus.gtf.gz -Entamoeba histolytica KU27 GenBank GCA_000338855.1 no 0 1796 0 Entamoeba histolytica KU27 AmoebaDB 885311 GCA_000338855.1_EHA_ku27_v1 GCA_000338855.1 False Entamoeba histolytica KU27 E.histolytica (KU27 2013) https://genome.ucsc.edu/h/GCA_000338855.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/338/855/GCA_000338855.1/genes/GCA_000338855.1_EHA_ku27_v1.augustus.gtf.gz -Entamoeba histolytica KU48 INSDC GCA_019059535.1 no 0 1168 0 Entamoeba histolytica KU48 AmoebaDB 885312 GCA_019059535.1_ASM1905953v1 GCA_019059535.1 False Entamoeba histolytica KU48 E.histolytica (KU48 2021) https://genome.ucsc.edu/h/GCA_019059535.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/019/059/535/GCA_019059535.1/genes/GCA_019059535.1_ASM1905953v1.augustus.gtf.gz -Entamoeba histolytica KU50 INSDC GCA_020283535.1 no 0 1063 0 Entamoeba histolytica KU50 AmoebaDB 885313 GCA_020283535.1_ASM2028353v1 GCA_020283535.1 False Entamoeba histolytica KU50 E.histolytica (KU50 2021) https://genome.ucsc.edu/h/GCA_020283535.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/283/535/GCA_020283535.1/genes/GCA_020283535.1_ASM2028353v1.augustus.gtf.gz -Entamoeba histolytica HM-3:IMSS GenBank GCA_000346345.1 no 0 1880 0 Entamoeba histolytica HM-3:IMSS AmoebaDB 885315 GCA_000346345.1_EHA.strHM3_v1 GCA_000346345.1 False Entamoeba histolytica HM-3:IMSS E.histolytica (HM-3:IMSS 2013) https://genome.ucsc.edu/h/GCA_000346345.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/346/345/GCA_000346345.1/genes/GCA_000346345.1_EHA.strHM3_v1.augustus.gtf.gz -Entamoeba histolytica HM-1:IMSS-A GenBank GCA_000365475.1 no 0 1685 0 Entamoeba histolytica HM-1:IMSS-A AmoebaDB 885318 GCA_000365475.1_EHA_CA_v1 GCA_000365475.1 False Entamoeba histolytica HM-1:IMSS-A E.histolytica (HM-1:IMSS-A 2013) https://genome.ucsc.edu/h/GCA_000365475.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/365/475/GCA_000365475.1/genes/GCA_000365475.1_EHA_CA_v1.augustus.gtf.gz -Entamoeba histolytica HM-1:IMSS-B GenBank GCA_000344925.1 no 0 1938 0 Entamoeba histolytica HM-1:IMSS-B AmoebaDB 885319 GCA_000344925.1_EHA_CB_v1 GCA_000344925.1 False Entamoeba histolytica HM-1:IMSS-B E.histolytica (HM-1:IMSS-B 2013) https://genome.ucsc.edu/h/GCA_000344925.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/344/925/GCA_000344925.1/genes/GCA_000344925.1_EHA_CB_v1.augustus.gtf.gz -Encephalitozoon hellem ATCC 50504 GenBank GCA_000277815.3 yes 0 0 12 Encephalitozoon hellem ATCC 50504 MicrosporidiaDB 907965 GCF_000277815.2_ASM27781v3 GCA_000277815.3 GCF_000277815.2 True Encephalitozoon hellem ATCC 50504 microsporidians E.hellem ATCC 50504 https://genome.ucsc.edu/h/GCF_000277815.2 -Trypanosoma cruzi JR cl. 4 GenBank GCA_000331405.1 no 14752 560 0 Trypanosoma cruzi JR cl. 4 TriTrypDB 914063 GCA_000331405.1_Trypanosoma_cruzi_JR_cl4-1.1.4 GCA_000331405.1 False Trypanosoma cruzi JR cl. 4 Trypanosoma cruzi (JR cl. 4 2013) https://genome.ucsc.edu/h/GCA_000331405.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/331/405/GCA_000331405.1/genes/GCA_000331405.1_Trypanosoma_cruzi_JR_cl4-1.1.4.augustus.gtf.gz -Leishmania mexicana MHOM/GT/2001/U1103 GenBank GCA_000234665.4 yes 554 0 34 Leishmania mexicana MHOM/GT/2001/U1103 TriTrypDB 929439 GCF_000234665.1_ASM23466v4 GCA_000234665.4 GCF_000234665.1 True Leishmania mexicana MHOM/GT/2001/U1103 Leishmania mexicana (MHOM/GT/2001/U1103 2011 kinetoplastids) https://genome.ucsc.edu/h/GCF_000234665.1 -Toxoplasma gondii VAND GenBank GCA_000224845.2 no 0 2137 0 Toxoplasma gondii VAND ToxoDB 933077 GCA_000224845.2_TGVAND_v2 GCA_000224845.2 False Toxoplasma gondii VAND apicomplexans T.gondii (VAND 2014) https://genome.ucsc.edu/h/GCA_000224845.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/224/845/GCA_000224845.2/genes/GCA_000224845.2_TGVAND_v2.augustus.gtf.gz -Toxoplasma gondii RUB GenBank GCA_000224805.2 no 0 2424 0 Toxoplasma gondii RUB ToxoDB 935652 GCA_000224805.2_TGRUB_v2 GCA_000224805.2 False Toxoplasma gondii RUB apicomplexans T.gondii (RUB 2014) https://genome.ucsc.edu/h/GCA_000224805.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/224/805/GCA_000224805.2/genes/GCA_000224805.2_TGRUB_v2.augustus.gtf.gz -Nematocida parisii ERTm3 GenBank GCA_000190615.1 no 0 53 0 Nematocida parisii ERTm3 MicrosporidiaDB 935791 GCA_000190615.1_Nema_parisii_ERTm3_V1 GCA_000190615.1 False Nematocida parisii ERTm3 microsporidians N.parisii (ERTm3 2011) https://genome.ucsc.edu/h/GCA_000190615.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/190/615/GCA_000190615.1/genes/GCA_000190615.1_Nema_parisii_ERTm3_V1.augustus.gtf.gz -Toxoplasma gondii MAS GenBank GCA_000224865.2 no 0 2180 0 Toxoplasma gondii MAS ToxoDB 943118 GCA_000224865.2_TGMAS1_v2 GCA_000224865.2 False Toxoplasma gondii MAS apicomplexans T.gondii (MAS 2014) https://genome.ucsc.edu/h/GCA_000224865.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/224/865/GCA_000224865.2/genes/GCA_000224865.2_TGMAS1_v2.augustus.gtf.gz -Toxoplasma gondii p89 GenBank GCA_000224885.2 no 0 2150 0 Toxoplasma gondii p89 ToxoDB 943119 GCA_000224885.2_TGP89A_v02 GCA_000224885.2 False Toxoplasma gondii p89 apicomplexans T.gondii (p89 2014) https://genome.ucsc.edu/h/GCA_000224885.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/224/885/GCA_000224885.2/genes/GCA_000224885.2_TGP89A_v02.augustus.gtf.gz -Toxoplasma gondii TgCATBr9 GenBank GCA_000224825.2 no 0 2452 0 Toxoplasma gondii TgCATBr9 ToxoDB 943120 GCA_000224825.2_TGCATBR9_v2 GCA_000224825.2 False Toxoplasma gondii TgCATBr9 apicomplexans T.gondii (TgCATBr9 2018) https://genome.ucsc.edu/h/GCA_000224825.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/224/825/GCA_000224825.2/genes/GCA_000224825.2_TGCATBR9_v2.augustus.gtf.gz -Toxoplasma gondii TgCATBr5 GenBank GCA_000259835.1 no 6995 0 0 Toxoplasma gondii TgCATBr5 ToxoDB 943121 GCA_000259835.1_TGCATBR5 GCA_000259835.1 False Toxoplasma gondii TgCATBr5 apicomplexans T.gondii (TgCATBr5 2011) https://genome.ucsc.edu/h/GCA_000259835.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/259/835/GCA_000259835.1/genes/GCA_000259835.1_TGCATBR5.augustus.gtf.gz -Toxoplasma gondii CAST GenBank GCA_000256705.2 no 0 2656 0 Toxoplasma gondii CAST ToxoDB 943122 GCA_000256705.2_TGCAST_v2 GCA_000256705.2 False Toxoplasma gondii CAST apicomplexans T.gondii (CAST 2018) https://genome.ucsc.edu/h/GCA_000256705.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/256/705/GCA_000256705.2/genes/GCA_000256705.2_TGCAST_v2.augustus.gtf.gz -Toxoplasma gondii FOU GenBank GCA_000224905.2 no 0 2869 0 Toxoplasma gondii FOU ToxoDB 943167 GCA_000224905.2_TGFOU1v02 GCA_000224905.2 False Toxoplasma gondii FOU apicomplexans T.gondii (FOU 2014) https://genome.ucsc.edu/h/GCA_000224905.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/224/905/GCA_000224905.2/genes/GCA_000224905.2_TGFOU1v02.augustus.gtf.gz -Vavraia culicis subsp. floridensis GenBank GCA_000192795.1 yes 0 379 0 Vavraia culicis subsp. floridensis MicrosporidiaDB 948595 GCF_000192795.1_Vavr_culi_floridensis_V1 GCA_000192795.1 GCF_000192795.1 True Vavraia culicis subsp. floridensis microsporidians V.culicis subsp. floridensis https://genome.ucsc.edu/h/GCF_000192795.1 -Leishmania donovani BPK282A1 GenBank GCA_000227135.2 yes 0 0 36 Leishmania donovani BPK282A1 TriTrypDB 5661 GCF_000227135.1_ASM22713v2 GCA_000227135.2 GCF_000227135.1 True Leishmania donovani Leishmania donovani (BPK282A1 2011 kinetoplastids) https://genome.ucsc.edu/h/GCF_000227135.1 -Cordyceps militaris CM01 INSDC GCA_000225605.1 no 0 32 0 Cordyceps militaris CM01 FungiDB 983644 GCF_000225605.1_CmilitarisCM01_v01 GCA_000225605.1 GCF_000225605.1 True Cordyceps militaris CM01 ascomycetes C.militaris CM01 https://genome.ucsc.edu/h/GCF_000225605.1 -Plenodomus lingam JN3 INSDC GCA_000230375.1 yes 0 76 0 Plenodomus lingam JN3 FungiDB 985895 GCF_000230375.1_ASM23037v1 GCA_000230375.1 GCF_000230375.1 True Plenodomus lingam JN3 blackleg of rapeseed fungus https://genome.ucsc.edu/h/GCF_000230375.1 -Encephalitozoon cuniculi EC1 GenBank GCA_000221285.2 no 0 0 12 Encephalitozoon cuniculi EC1 MicrosporidiaDB 986730 GCA_000221285.2_Ence_cuni_EC1_V1 GCA_000221285.2 False Encephalitozoon cuniculi EC1 microsporidians E.cuniculi (EC1 2011) https://genome.ucsc.edu/h/GCA_000221285.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/221/285/GCA_000221285.2/genes/GCA_000221285.2_Ence_cuni_EC1_V1.augustus.gtf.gz -Encephalitozoon cuniculi EC2 GenBank GCA_000221265.2 no 0 0 16 Encephalitozoon cuniculi EC2 MicrosporidiaDB 989654 GCA_000221265.2_Ence_cuni_EC2_V1 GCA_000221265.2 False Encephalitozoon cuniculi EC2 microsporidians E.cuniculi (EC2 2011) https://genome.ucsc.edu/h/GCA_000221265.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/221/265/GCA_000221265.2/genes/GCA_000221265.2_Ence_cuni_EC2_V1.augustus.gtf.gz -Encephalitozoon cuniculi EC3 GenBank GCA_000221245.2 no 0 0 15 Encephalitozoon cuniculi EC3 MicrosporidiaDB 989655 GCA_000221245.2_Ence_cuni_EC3_V1 GCA_000221245.2 False Encephalitozoon cuniculi EC3 microsporidians E.cuniculi (EC3 2011) https://genome.ucsc.edu/h/GCA_000221245.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/221/245/GCA_000221245.2/genes/GCA_000221245.2_Ence_cuni_EC3_V1.augustus.gtf.gz -Vittaforma corneae ATCC 50505 GenBank GCA_000231115.1 yes 0 220 0 Vittaforma corneae ATCC 50505 MicrosporidiaDB 993615 GCF_000231115.1_Vitt_corn_V1 GCA_000231115.1 GCF_000231115.1 True Vittaforma corneae ATCC 50505 microsporidians V.corneae ATCC 50505 https://genome.ucsc.edu/h/GCF_000231115.1 -Sporisorium reilianum SRZ2 GenBank GCA_000230245.1 yes 21 0 23 Sporisorium reilianum SRZ2 FungiDB 999809 GCA_000230245.1_ASM23024v1 GCA_000230245.1 False Sporisorium reilianum SRZ2 smut fungi S.reilianum SRZ2 (2011) https://genome.ucsc.edu/h/GCA_000230245.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/230/245/GCA_000230245.1/genes/GCA_000230245.1_ASM23024v1.augustus.gtf.gz -Aedes aegypti Aag2 INSDC GCA_021653915.1 no 0 3752 0 Aedes aegypti Aag2 VectorBase 7159 GCA_021653915.1_ASM2165391v1 GCA_021653915.1 False Aedes aegypti yellow fever mosquito (Aag2 2022) https://genome.ucsc.edu/h/GCA_021653915.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/021/653/915/GCA_021653915.1/genes/GCA_021653915.1_ASM2165391v1.augustus.gtf.gz -Aedes aegypti LVP_AGWG INSDC GCA_002204515.1 yes 0 2306 3 Aedes aegypti LVP_AGWG VectorBase 7159 GCF_002204515.2_AaegL5.0 GCA_002204515.1 GCF_002204515.2 False Aedes aegypti yellow fever mosquito (LVP_AGWG 2017 refseq) https://genome.ucsc.edu/h/GCF_002204515.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/204/515/GCA_002204515.1/genes/GCA_002204515.1_AaegL5.0.augustus.gtf.gz -Aedes albopictus C6/36 cell line INSDC GCF_001876365.2 no 0 2434 0 Aedes albopictus C6/36 cell line VectorBase 7160 GCF_001876365.2_canu_80X_arrow2.2 GCA_001876365.2 GCF_001876365.2 False Aedes albopictus Asian tiger mosquito (C6/36 2017 refseq) https://genome.ucsc.edu/h/GCF_001876365.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/001/876/365/GCF_001876365.2/genes/GCF_001876365.2_canu_80X_arrow2.2.ncbiRefSeq.gtf.gz -Aedes albopictus Foshan FPA INSDC GCA_006496715.1 yes 0 2196 0 Aedes albopictus Foshan FPA VectorBase 7160 GCF_006496715.2_Aalbo_primary.1 GCA_006496715.1 GCF_006496715.2 False Aedes albopictus Asian tiger mosquito (v2 FPA 2019) https://genome.ucsc.edu/h/GCF_006496715.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/006/496/715/GCA_006496715.1/genes/GCA_006496715.1_Aalbo_primary.1.augustus.gtf.gz -Anopheles albimanus STECLA INSDC GCA_000349125.2 no 0 196 5 Anopheles albimanus STECLA VectorBase 7167 GCA_000349125.2_Anop_albi_ALBI9_A_V2 GCA_000349125.2 False Anopheles albimanus mosquito A.albimanus (ALBI9_A 2017) https://genome.ucsc.edu/h/GCA_000349125.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/125/GCA_000349125.2/genes/GCA_000349125.2_Anop_albi_ALBI9_A_V2.augustus.gtf.gz -Anopheles albimanus STECLA 2020 INSDC GCF_013758885.1 yes 0 4 3 Anopheles albimanus STECLA 2020 VectorBase 7167 GCF_013758885.1_VT_AalbS3_pri_1.0 GCA_013758885.1 GCF_013758885.1 True Anopheles albimanus mosquito A.albimanus (STELCA 2020) https://genome.ucsc.edu/h/GCF_013758885.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/013/758/885/GCF_013758885.1/genes/GCF_013758885.1_VT_AalbS3_pri_1.0.ncbiRefSeq.gtf.gz -Alternaria alternata SRC1lrK2f INSDC GCA_001642055.1 yes 0 79 0 Alternaria alternata SRC1lrK2f FungiDB 5599 GCF_001642055.1_Altal1 GCA_001642055.1 GCF_001642055.1 True Alternaria alternata ascomycetes A.alternata https://genome.ucsc.edu/h/GCF_001642055.1 -Anopheles aquasalis AaquGF1 INSDC GCF_943734665.1 yes 0 86 4 Anopheles aquasalis AaquGF1 VectorBase 42839 GCF_943734665.1_idAnoAquaMG_Q_19 GCA_943734665.1 GCF_943734665.1 True Anopheles aquasalis mosquito A.aquasalis (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734665.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/665/GCF_943734665.1/genes/GCF_943734665.1_idAnoAquaMG_Q_19.ncbiRefSeq.gtf.gz -Anopheles arabiensis DONGOLA 2021 INSDC GCF_016920715.1 yes 0 98 3 Anopheles arabiensis DONGOLA 2021 VectorBase 7173 GCF_016920715.1_AaraD3 GCA_016920715.1 GCF_016920715.1 False Anopheles arabiensis mosquito A.arabiensis (DONGOLA 2021) https://genome.ucsc.edu/h/GCF_016920715.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/016/920/715/GCF_016920715.1/genes/GCF_016920715.1_AaraD3.ncbiRefSeq.gtf.gz -Anopheles arabiensis Dongola INSDC GCA_000349185.1 no 0 1214 0 Anopheles arabiensis Dongola VectorBase 7173 GCA_000349185.1_Anop_arab_DONG5_A_V1 GCA_000349185.1 False Anopheles arabiensis mosquito A.arabiensis (DONG5_A 2013) https://genome.ucsc.edu/h/GCA_000349185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/185/GCA_000349185.1/genes/GCA_000349185.1_Anop_arab_DONG5_A_V1.augustus.gtf.gz -Aphanomyces astaci strain APO3 GenBank GCA_000520075.1 yes 0 835 0 Aphanomyces astaci strain APO3 FungiDB 112090 GCF_000520075.1_Apha_asta_APO3_V1 GCA_000520075.1 GCF_000520075.1 True Aphanomyces astaci oomycetes (APO3 2014) https://genome.ucsc.edu/h/GCF_000520075.1 -Acanthamoeba astronyxis Unknown GenBank GCA_000826245.1 yes 0 98248 0 Acanthamoeba astronyxis Unknown AmoebaDB 65658 GCA_000826245.1_Acanthamoeba_astronyxis GCA_000826245.1 False Acanthamoeba astronyxis A.astronyxis (2015) https://genome.ucsc.edu/h/GCA_000826245.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/245/GCA_000826245.1/genes/GCA_000826245.1_Acanthamoeba_astronyxis.augustus.gtf.gz -Anopheles atroparvus EBRO INSDC GCA_000473505.1 yes 0 1315 5 Anopheles atroparvus EBRO VectorBase 41427 GCA_000473505.1_Anop_atro_EBRO_V1 GCA_000473505.1 False Anopheles atroparvus mosquito A.atroparvus (EBRO 2013) https://genome.ucsc.edu/h/GCA_000473505.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/473/505/GCA_000473505.1/genes/GCA_000473505.1_Anop_atro_EBRO_V1.augustus.gtf.gz -Anopheles bellator AbelBR1 INSDC GCF_943735745.2 yes 0 2982 3 Anopheles bellator AbelBR1 VectorBase 139047 GCF_943735745.2_idAnoBellAS_SP24_06.2 GCA_943735745.2 GCF_943735745.2 False Anopheles bellator mosquito A.bellator (2023) https://genome.ucsc.edu/h/GCF_943735745.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/735/745/GCF_943735745.2/genes/GCF_943735745.2_idAnoBellAS_SP24_06.2.ncbiRefSeq.gtf.gz -Acanthamoeba castellanii C3 INSDC GCA_021020595.1 no 0 174 0 Acanthamoeba castellanii C3 AmoebaDB 5755 GCA_021020595.1_ASM2102059v1 GCA_021020595.1 False Acanthamoeba castellanii A.castellanii (C3 2021) https://genome.ucsc.edu/h/GCA_021020595.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/021/020/595/GCA_021020595.1/genes/GCA_021020595.1_ASM2102059v1.augustus.gtf.gz -Acanthamoeba castellanii Ma GenBank GCA_000826485.1 no 0 221748 0 Acanthamoeba castellanii Ma AmoebaDB 5755 GCA_000826485.1_Acanthamoeba_castellanii GCA_000826485.1 False Acanthamoeba castellanii A.castellanii (2015) https://genome.ucsc.edu/h/GCA_000826485.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/485/GCA_000826485.1/genes/GCA_000826485.1_Acanthamoeba_castellanii.augustus.gtf.gz -Acanthamoeba castellanii str. Neff 2021 INSDC GCA_021020605.1 no 0 111 0 Acanthamoeba castellanii str. Neff 2021 AmoebaDB 5755 GCA_021020605.1_ASM2102060v1 GCA_021020605.1 False Acanthamoeba castellanii A.castellanii (Neff 2021) https://genome.ucsc.edu/h/GCA_021020605.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/021/020/605/GCA_021020605.1/genes/GCA_021020605.1_ASM2102060v1.augustus.gtf.gz -Anopheles christyi ACHKN1017 INSDC GCA_000349165.1 yes 0 30369 0 Anopheles christyi ACHKN1017 VectorBase 43041 GCA_000349165.1_Anop_chri_ACHKN1017_V1 GCA_000349165.1 False Anopheles christyi mosquito A.christyi (ACHKN1017 2013) https://genome.ucsc.edu/h/GCA_000349165.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/165/GCA_000349165.1/genes/GCA_000349165.1_Anop_chri_ACHKN1017_V1.augustus.gtf.gz -Anopheles coluzzii AcolN3 INSDC GCF_943734685.1 yes 0 125 3 Anopheles coluzzii AcolN3 VectorBase 1518534 GCF_943734685.1_AcolN3 GCA_943734685.1 GCF_943734685.1 True Anopheles coluzzii mosquito A.coluzzii (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734685.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/685/GCF_943734685.1/genes/GCF_943734685.1_AcolN3.ncbiRefSeq.gtf.gz -Anopheles coluzzii MOPTI INSDC GCF_016920705.1 no 0 196 3 Anopheles coluzzii MOPTI VectorBase 1518534 GCF_016920705.1_AcolMOP1 GCA_016920705.1 GCF_016920705.1 False Anopheles coluzzii mosquito A.coluzzi (MOPTI 2021) https://genome.ucsc.edu/h/GCF_016920705.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/016/920/705/GCF_016920705.1/genes/GCF_016920705.1_AcolMOP1.ncbiRefSeq.gtf.gz -Anopheles coluzzii Mali-NIH INSDC GCA_000150765.1 no 0 10521 0 Anopheles coluzzii Mali-NIH VectorBase 1518534 GCA_000150765.1_m5 GCA_000150765.1 False Anopheles coluzzii mosquito A.coluzzii (M 2008) https://genome.ucsc.edu/h/GCA_000150765.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/765/GCA_000150765.1/genes/GCA_000150765.1_m5.augustus.gtf.gz -Anopheles coluzzii Ngousso INSDC GCA_004136515.2 no 0 205 0 Anopheles coluzzii Ngousso VectorBase 1518534 GCA_004136515.2_ASM413651v2 GCA_004136515.2 False Anopheles coluzzii mosquito A.coluzzii (Ngousso colony 2019) https://genome.ucsc.edu/h/GCA_004136515.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/136/515/GCA_004136515.2/genes/GCA_004136515.2_ASM413651v2.augustus.gtf.gz -Anopheles coustani AcouGA1 INSDC GCF_943734705.1 yes 0 416 3 Anopheles coustani AcouGA1 VectorBase 139045 GCF_943734705.1_idAnoCousDA_361_x.2 GCA_943734705.2 GCF_943734705.1 False Anopheles coustani mosquito A.coustani (2023) https://genome.ucsc.edu/h/GCF_943734705.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/705/GCF_943734705.1/genes/GCF_943734705.1_idAnoCousDA_361_x.2.ncbiRefSeq.gtf.gz -Aspergillus cristatus GZAAS20.1005 INSDC GCA_001717485.1 yes 0 68 0 Aspergillus cristatus GZAAS20.1005 FungiDB 573508 GCA_001717485.1_ASM171748v1 GCA_001717485.1 False Aspergillus cristatus ascomycetes A.cristatus (GZAAS20.1005 2016) https://genome.ucsc.edu/h/GCA_001717485.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/717/485/GCA_001717485.1/genes/GCA_001717485.1_ASM171748v1.augustus.gtf.gz -Anopheles cruzii AcruBR1 INSDC GCF_943734635.1 yes 0 5085 3 Anopheles cruzii AcruBR1 VectorBase 68878 GCF_943734635.1_idAnoCruzAS_RS32_06 GCA_943734635.1 GCF_943734635.1 False Anopheles cruzii mosquito A.cruzii (2022) https://genome.ucsc.edu/h/GCF_943734635.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/635/GCF_943734635.1/genes/GCF_943734635.1_idAnoCruzAS_RS32_06.ncbiRefSeq.gtf.gz -Acanthamoeba sp Galka GenBank GCA_000826505.1 yes 0 224137 0 Acanthamoeba sp. Galka AmoebaDB 65662 GCA_000826505.1_Acanthamoeba_pearcei GCA_000826505.1 False Acanthamoeba pearcei A.pearcei (2015) https://genome.ucsc.edu/h/GCA_000826505.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/505/GCA_000826505.1/genes/GCA_000826505.1_Acanthamoeba_pearcei.augustus.gtf.gz -Acanthamoeba sp Incertae sedis GenBank GCA_000826365.1 no 0 24098 0 Acanthamoeba sp. Incertae_sedis AmoebaDB 32600 GCA_000826365.1_Acanthamoeba_royreba GCA_000826365.1 False Acanthamoeba royreba A.royreba (2015) https://genome.ucsc.edu/h/GCA_000826365.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/365/GCA_000826365.1/genes/GCA_000826365.1_Acanthamoeba_royreba.augustus.gtf.gz -Acanthamoeba sp T4b-type GenBank GCA_000826345.1 no 0 224482 0 Acanthamoeba sp. T4B-type AmoebaDB 5757 GCA_000826345.1_Acanthamoeba_polyphaga GCA_000826345.1 False Acanthamoeba polyphaga A.polyphaga (2015) https://genome.ucsc.edu/h/GCA_000826345.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/345/GCA_000826345.1/genes/GCA_000826345.1_Acanthamoeba_polyphaga.augustus.gtf.gz -Anopheles culicifacies A-37 INSDC GCA_000473375.1 yes 0 16162 0 Anopheles culicifacies A-37 VectorBase 139723 GCA_000473375.1_Anop_culi_species_A-37_1_V1 GCA_000473375.1 False Anopheles culicifacies mosquito A.culicifacies (species A-37_1 2013) https://genome.ucsc.edu/h/GCA_000473375.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/473/375/GCA_000473375.1/genes/GCA_000473375.1_Anop_culi_species_A-37_1_V1.augustus.gtf.gz -Acanthamoeba culbertsoni A1 GenBank GCA_000826265.1 yes 0 72411 0 Acanthamoeba culbertsoni A1 AmoebaDB 43142 GCA_000826265.1_Acanthamoeba_culbertsoni_genome_assembly GCA_000826265.1 False Acanthamoeba culbertsoni A.culbertsoni (2015) https://genome.ucsc.edu/h/GCA_000826265.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/265/GCA_000826265.1/genes/GCA_000826265.1_Acanthamoeba_culbertsoni_genome_assembly.augustus.gtf.gz -Anopheles darlingi AdarGF1 INSDC GCF_943734745.1 yes 0 62 3 Anopheles darlingi AdarGF1 VectorBase 43151 GCF_943734745.1_idAnoDarlMG_H_01 GCA_943734745.1 GCF_943734745.1 True Anopheles darlingi American malaria mosquito (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734745.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/745/GCF_943734745.1/genes/GCF_943734745.1_idAnoDarlMG_H_01.ncbiRefSeq.gtf.gz -Anopheles darlingi Coari INSDC GCA_000211455.3 no 0 2220 0 Anopheles darlingi Coari VectorBase 43151 GCA_000211455.3_A_darlingi_v1 GCA_000211455.3 False Anopheles darlingi American malaria mosquito (2013) https://genome.ucsc.edu/h/GCA_000211455.3 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/211/455/GCA_000211455.3/genes/GCA_000211455.3_A_darlingi_v1.augustus.gtf.gz -Angomonas deanei strain Cavalho ATCC PRA-265 INSDC GCA_903995115.1 yes 0 0 29 Angomonas deanei strain Cavalho ATCC PRA-265 TriTrypDB 59799 GCA_903995115.1_Adeanei_nanopore_chromosomes GCA_903995115.1 False Angomonas deanei Angomonas (Crithidia deanei Carvalho ATCC PRA-265 2020) https://genome.ucsc.edu/h/GCA_903995115.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/903/995/115/GCA_903995115.1/genes/GCA_903995115.1_Adeanei_nanopore_chromosomes.augustus.gtf.gz -Anopheles dirus WRAIR2 INSDC GCA_000349145.1 yes 0 1266 0 Anopheles dirus WRAIR2 VectorBase 7168 GCA_000349145.1_Anop_diru_WRAIR2_V1 GCA_000349145.1 False Anopheles dirus mosquito A.dirus (WRAIR2 2013) https://genome.ucsc.edu/h/GCA_000349145.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/145/GCA_000349145.1/genes/GCA_000349145.1_Anop_diru_WRAIR2_V1.augustus.gtf.gz -Anopheles epiroticus Epiroticus2 INSDC GCA_000349105.1 yes 0 2673 0 Anopheles epiroticus Epiroticus2 VectorBase 199890 GCA_000349105.1_Anop_epir_epiroticus2_V1 GCA_000349105.1 False Anopheles epiroticus mosquito A.epiroticus (epiroticus2 2013) https://genome.ucsc.edu/h/GCA_000349105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/105/GCA_000349105.1/genes/GCA_000349105.1_Anop_epir_epiroticus2_V1.augustus.gtf.gz -Aphanomyces euteiches MF1 INSDC GCA_021527665.1 yes 0 7789 0 Aphanomyces euteiches MF1 FungiDB 100861 GCA_021527665.1_ASM2152766v1 GCA_021527665.1 False Aphanomyces euteiches oomycetes (MF1 2022) https://genome.ucsc.edu/h/GCA_021527665.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/021/527/665/GCA_021527665.1/genes/GCA_021527665.1_ASM2152766v1.augustus.gtf.gz -Anopheles farauti FAR1 INSDC GCA_000473445.2 yes 0 310 0 Anopheles farauti FAR1 VectorBase 69004 GCA_000473445.2_Anop_fara_FAR1_V2 GCA_000473445.2 False Anopheles farauti mosquito A.farauti (FAR1 2014) https://genome.ucsc.edu/h/GCA_000473445.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/473/445/GCA_000473445.2/genes/GCA_000473445.2_Anop_fara_FAR1_V2.augustus.gtf.gz -Arthrobotrys flagrans CBS H-5679 INSDC GCA_004000055.1 yes 0 14 0 Arthrobotrys flagrans CBS H-5679 FungiDB 97331 GCA_004000055.1_DF_1.0 GCA_004000055.1 GCF_004000055.1 True Arthrobotrys flagrans ascomycetes A.flagrans (CBS H-5679 2019) https://genome.ucsc.edu/h/GCA_004000055.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/000/055/GCA_004000055.1/genes/GCA_004000055.1_DF_1.0.augustus.gtf.gz -Aspergillus flavus NRRL3357 2020 INSDC GCA_009017415.1 no 0 0 8 Aspergillus flavus NRRL3357 2020 FungiDB 5059 GCA_009017415.1_ASM901741v1 GCA_009017415.1 False Aspergillus flavus ascomycetes A.flavus (NRRL 3357 2019) https://genome.ucsc.edu/h/GCA_009017415.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/017/415/GCA_009017415.1/genes/GCA_009017415.1_ASM901741v1.augustus.gtf.gz -Anopheles funestus AfunGA1 INSDC GCF_943734845.2 yes 0 326 3 Anopheles funestus AfunGA1 VectorBase 62324 GCF_943734845.2_idAnoFuneDA-416_04 GCA_943734845.1 GCF_943734845.2 True Anopheles funestus African malaria mosquito (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734845.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/845/GCF_943734845.2/genes/GCF_943734845.2_idAnoFuneDA-416_04.ncbiRefSeq.gtf.gz -Anopheles funestus FUMOZ INSDC GCA_003951495.1 no 0 0 3 Anopheles funestus FUMOZ VectorBase 62324 GCA_003951495.1_AfunF3 GCA_003951495.1 False Anopheles funestus African malaria mosquito (FUMOZ 2018) https://genome.ucsc.edu/h/GCA_003951495.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/951/495/GCA_003951495.1/genes/GCA_003951495.1_AfunF3.augustus.gtf.gz -Anopheles gambiae Ifakara INSDC GCF_943734735.2 no 0 187 3 Anopheles gambiae Ifakara VectorBase 7165 GCF_943734735.2_idAnoGambNW_F1_1 GCA_943734735.2 GCF_943734735.2 True Anopheles gambiae African malaria mosquito (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734735.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/735/GCF_943734735.2/genes/GCF_943734735.2_idAnoGambNW_F1_1.ncbiRefSeq.gtf.gz -Anopheles gambiae Pimperena INSDC GCA_000150785.1 no 0 13042 0 Anopheles gambiae Pimperena VectorBase 7165 GCA_000150785.1_g4 GCA_000150785.1 False Anopheles gambiae African malaria mosquito (S 2008) https://genome.ucsc.edu/h/GCA_000150785.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/150/785/GCA_000150785.1/genes/GCA_000150785.1_g4.augustus.gtf.gz -Aphanomyces invadans NJM9701 GenBank GCA_000520115.1 yes 0 481 0 Aphanomyces invadans NJM9701 FungiDB 157072 GCF_000520115.1_Apha_inva_NJM9701_V1 GCA_000520115.1 GCF_000520115.1 True Aphanomyces invadans oomycetes (NJM9701 2014) https://genome.ucsc.edu/h/GCF_000520115.1 -Aspergillus lentulus strain IFM 54703 INSDC GCA_001445615.2 yes 0 12 0 Aspergillus lentulus strain IFM 54703 FungiDB 293939 GCA_001445615.2_Alt_assembly01 GCA_001445615.2 False Aspergillus lentulus ascomycetes A.lentulus (IFM 54703 2021) https://genome.ucsc.edu/h/GCA_001445615.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/445/615/GCA_001445615.2/genes/GCA_001445615.2_Alt_assembly01.augustus.gtf.gz -Acanthamoeba lenticulata PD2S GenBank GCA_000826285.1 yes 0 79048 0 Acanthamoeba lenticulata PD2S AmoebaDB 29196 GCA_000826285.1_Acanthamoeba_lenticulata GCA_000826285.1 False Acanthamoeba lenticulata A.lenticulata (2015) https://genome.ucsc.edu/h/GCA_000826285.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/285/GCA_000826285.1/genes/GCA_000826285.1_Acanthamoeba_lenticulata.augustus.gtf.gz -Antonospora locustae CLX INSDC GCA_007674295.1 yes 0 1 17 Antonospora locustae CLX MicrosporidiaDB 278021 GCA_007674295.1_ASM767429v1 GCA_007674295.1 False Antonospora locustae microsporidians A.locustae (CLX 2019) https://genome.ucsc.edu/h/GCA_007674295.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/007/674/295/GCA_007674295.1/genes/GCA_007674295.1_ASM767429v1.augustus.gtf.gz -Acanthamoeba lugdunensis L3a GenBank GCA_000826425.1 yes 0 67459 0 Acanthamoeba lugdunensis L3a AmoebaDB 61605 GCA_000826425.1_Acanthamoeba_lugdunensis GCA_000826425.1 False Acanthamoeba lugdunensis A.lugdunensis (2015) https://genome.ucsc.edu/h/GCA_000826425.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/425/GCA_000826425.1/genes/GCA_000826425.1_Acanthamoeba_lugdunensis.augustus.gtf.gz -Anopheles maculipalpis AmacGA1 INSDC GCF_943734695.1 yes 0 167 3 Anopheles maculipalpis AmacGA1 VectorBase 1496333 GCF_943734695.1_idAnoMacuDA_375_x GCA_943734695.1 GCF_943734695.1 True Anopheles maculipalpis mosquito A.maculipalpis (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734695.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/695/GCF_943734695.1/genes/GCF_943734695.1_idAnoMacuDA_375_x.ncbiRefSeq.gtf.gz -Amblyomma maculatum SK-2019 INSDC GCA_023969395.1 yes 0 125877 0 Amblyomma maculatum SK-2019 VectorBase 34609 GCA_023969395.1_ASM2396939v1 GCA_023969395.1 False Amblyomma maculatum Gulf Coast tick (SK-2019 2022) https://genome.ucsc.edu/h/GCA_023969395.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/023/969/395/GCA_023969395.1/genes/GCA_023969395.1_ASM2396939v1.augustus.gtf.gz -Anopheles maculatus maculatus3 INSDC GCA_000473185.1 yes 0 47797 0 Anopheles maculatus maculatus3 VectorBase 74869 GCA_000473185.1_Anop_macu_maculatus3_V1 GCA_000473185.1 False Anopheles maculatus mosquito A.maculatus (maculatus3 2013) https://genome.ucsc.edu/h/GCA_000473185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/473/185/GCA_000473185.1/genes/GCA_000473185.1_Anop_macu_maculatus3_V1.augustus.gtf.gz -Anopheles marshallii AmarGA1 INSDC GCF_943734725.1 yes 0 285 3 Anopheles marshallii AmarGA1 VectorBase 1521116 GCF_943734725.1_idAnoMarsDA_429_01 GCA_943734725.1 GCF_943734725.1 True Anopheles marshallii mosquito A.marshallii (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734725.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/725/GCF_943734725.1/genes/GCF_943734725.1_idAnoMarsDA_429_01.ncbiRefSeq.gtf.gz -Acanthamoeba mauritaniensis 1652 GenBank GCA_000826465.1 yes 0 67233 0 Acanthamoeba mauritaniensis 1652 AmoebaDB 196912 GCA_000826465.1_Acanthamoeba_mauritaniensis GCA_000826465.1 False Acanthamoeba mauritaniensis A.mauritaniensis (2015) https://genome.ucsc.edu/h/GCA_000826465.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/465/GCA_000826465.1/genes/GCA_000826465.1_Acanthamoeba_mauritaniensis.augustus.gtf.gz -Anopheles melas CM1001059_A INSDC GCA_000473525.2 yes 0 20229 0 Anopheles melas CM1001059_A VectorBase 34690 GCA_000473525.2_Anop_mela_CM1001059_A_V2 GCA_000473525.2 False Anopheles melas mosquito A.melas (CM1001059_A 2014) https://genome.ucsc.edu/h/GCA_000473525.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/473/525/GCA_000473525.2/genes/GCA_000473525.2_Anop_mela_CM1001059_A_V2.augustus.gtf.gz -Anopheles merus MAF INSDC GCA_000473845.2 no 0 2027 0 Anopheles merus MAF VectorBase 30066 GCA_000473845.2_Anop_meru_MAF_V1 GCA_000473845.2 False Anopheles merus mosquito A.merus (MAF 2014) https://genome.ucsc.edu/h/GCA_000473845.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/473/845/GCA_000473845.2/genes/GCA_000473845.2_Anop_meru_MAF_V1.augustus.gtf.gz -Anopheles merus MAF 2021 INSDC GCF_017562075.2 yes 0 1322 5 Anopheles merus MAF 2021 VectorBase 30066 GCF_017562075.2_AmerM5.1 GCA_017562075.2 GCF_017562075.2 False Anopheles merus mosquito A.merus (MAF 2021) https://genome.ucsc.edu/h/GCF_017562075.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/017/562/075/GCF_017562075.2/genes/GCF_017562075.2_AmerM5.1.ncbiRefSeq.gtf.gz -Anopheles minimus MINIMUS1 INSDC GCA_000349025.1 yes 0 678 0 Anopheles minimus MINIMUS1 VectorBase 112268 GCA_000349025.1_Anop_mini_MINIMUS1_V1 GCA_000349025.1 False Anopheles minimus mosquito A.minimus (MINIMUS1 2013) https://genome.ucsc.edu/h/GCA_000349025.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/025/GCA_000349025.1/genes/GCA_000349025.1_Anop_mini_MINIMUS1_V1.augustus.gtf.gz -Apiotrichum montevideense JCM 9937 INSDC GCA_001598995.1 yes 0 61 0 Apiotrichum montevideense JCM 9937 FungiDB 82521 GCA_001598995.1_JCM_9937_assembly_v001 GCA_001598995.1 False Apiotrichum montevideense basidiomycetes A.montevideense (JCM 9937 2016) https://genome.ucsc.edu/h/GCA_001598995.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/598/995/GCA_001598995.1/genes/GCA_001598995.1_JCM_9937_assembly_v001.augustus.gtf.gz -Anopheles moucheti AmouCM1 INSDC GCF_943734755.1 yes 0 342 3 Anopheles moucheti AmouCM1 VectorBase 186751 GCF_943734755.1_idAnoMoucSN_F20_07 GCA_943734755.1 GCF_943734755.1 False Anopheles moucheti mosquito A.moucheti (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734755.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/755/GCF_943734755.1/genes/GCF_943734755.1_idAnoMoucSN_F20_07.ncbiRefSeq.gtf.gz -Amauroascus mutatus isolate UAMH 3576 GenBank GCA_001430935.1 yes 3075 0 0 Amauroascus mutatus isolate UAMH 3576 FungiDB 2074759 GCA_001430935.1_ASM143093v1 GCA_001430935.1 False Amauroascus verrucosus ascomycetes A.verrucosus (UAMH 3576 2015) https://genome.ucsc.edu/h/GCA_001430935.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/430/935/GCA_001430935.1/genes/GCA_001430935.1_ASM143093v1.augustus.gtf.gz -Aspergillus niger strain LDM3 INSDC GCA_009812365.1 no 0 14 0 Aspergillus niger strain LDM3 FungiDB 5061 GCA_009812365.1_ASM981236v1 GCA_009812365.1 False Aspergillus niger ascomycetes A.niger (LDM3 2019) https://genome.ucsc.edu/h/GCA_009812365.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/812/365/GCA_009812365.1/genes/GCA_009812365.1_ASM981236v1.augustus.gtf.gz -Aspergillus niger strain N402 (ATCC64974) GenBank GCA_900248155.1 no 19 0 0 Aspergillus niger strain N402 (ATCC64974) FungiDB 5061 GCA_900248155.1_Aniger_ATCC_64974_N402 GCA_900248155.1 False Aspergillus niger ascomycetes A.niger (N402 ATCC 64974 2018) https://genome.ucsc.edu/h/GCA_900248155.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/248/155/GCA_900248155.1/genes/GCA_900248155.1_Aniger_ATCC_64974_N402.augustus.gtf.gz -Amauroascus niger isolate UAMH 3544 GenBank GCA_001430945.1 yes 3481 0 0 Amauroascus niger isolate UAMH 3544 FungiDB 89421 GCA_001430945.1_ASM143094v1 GCA_001430945.1 False Amauroascus niger ascomycetes A.niger (UAMH 3544 2015) https://genome.ucsc.edu/h/GCA_001430945.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/430/945/GCA_001430945.1/genes/GCA_001430945.1_ASM143094v1.augustus.gtf.gz -Anopheles nili AnilCM1 INSDC GCF_943737925.1 yes 0 153 3 Anopheles nili AnilCM1 VectorBase 185578 GCF_943737925.1_idAnoNiliSN_F5_01 GCA_943737925.1 GCF_943737925.1 True Anopheles nili mosquito A.nili (primary hap 2022) https://genome.ucsc.edu/h/GCF_943737925.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/737/925/GCF_943737925.1/genes/GCF_943737925.1_idAnoNiliSN_F5_01.ncbiRefSeq.gtf.gz -Acanthamoeba palestinensis Reich GenBank GCA_000826305.1 yes 0 26188 0 Acanthamoeba palestinensis Reich AmoebaDB 65661 GCA_000826305.1_Acanthamoeba_healyi GCA_000826305.1 False Acanthamoeba healyi A.healyi (2015) https://genome.ucsc.edu/h/GCA_000826305.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/305/GCA_000826305.1/genes/GCA_000826305.1_Acanthamoeba_healyi.augustus.gtf.gz -Aspergillus parasiticus CBS 117618 INSDC GCA_009176385.1 yes 0 270 0 Aspergillus parasiticus CBS 117618 FungiDB 5067 GCA_009176385.1_Asppar1 GCA_009176385.1 False Aspergillus parasiticus ascomycetes A.parasiticus (CBS 117618 2019) https://genome.ucsc.edu/h/GCA_009176385.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/176/385/GCA_009176385.1/genes/GCA_009176385.1_Asppar1.augustus.gtf.gz -Anopheles quadriannulatus SANGWE INSDC GCA_000349065.1 yes 0 2823 0 Anopheles quadriannulatus SANGWE VectorBase 34691 GCA_000349065.1_Anop_quad_QUAD4_A_V1 GCA_000349065.1 False Anopheles quadriannulatus mosquito A.quadriannulatus (QUAD4_A 2013) https://genome.ucsc.edu/h/GCA_000349065.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/065/GCA_000349065.1/genes/GCA_000349065.1_Anop_quad_QUAD4_A_V1.augustus.gtf.gz -Acanthamoeba quina Vil3 GenBank GCA_000826445.1 yes 0 60490 0 Acanthamoeba quina Vil3 AmoebaDB 211522 GCA_000826445.1_Acanthamoeba_quina GCA_000826445.1 False Acanthamoeba quina A.quina (2015) https://genome.ucsc.edu/h/GCA_000826445.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/445/GCA_000826445.1/genes/GCA_000826445.1_Acanthamoeba_quina.augustus.gtf.gz -Acanthamoeba rhysodes Singh GenBank GCA_000826385.1 yes 0 62836 0 Acanthamoeba rhysodes Singh AmoebaDB 32599 GCA_000826385.1_Acanthamoeba_rhysodes GCA_000826385.1 False Acanthamoeba rhysodes A.rhysodes (2015) https://genome.ucsc.edu/h/GCA_000826385.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/385/GCA_000826385.1/genes/GCA_000826385.1_Acanthamoeba_rhysodes.augustus.gtf.gz -Anopheles sinensis China INSDC GCA_000441895.2 yes 0 9592 0 Anopheles sinensis China VectorBase 74873 GCA_000441895.2_AS2 GCA_000441895.2 False Anopheles sinensis mosquito A.sinensis (2014) https://genome.ucsc.edu/h/GCA_000441895.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/441/895/GCA_000441895.2/genes/GCA_000441895.2_AS2.augustus.gtf.gz -Anopheles sinensis SINENSIS INSDC GCA_000472065.2 no 0 10448 0 Anopheles sinensis SINENSIS VectorBase 74873 GCA_000472065.2_Anop_sine_SINENSIS_V1 GCA_000472065.2 False Anopheles sinensis mosquito A.sinensis (SINENSIS 2014) https://genome.ucsc.edu/h/GCA_000472065.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/472/065/GCA_000472065.2/genes/GCA_000472065.2_Anop_sine_SINENSIS_V1.augustus.gtf.gz -Anopheles stephensi Indian INSDC GCA_000300775.2 no 0 23371 0 Anopheles stephensi Indian VectorBase 30069 GCA_000300775.2_ASM30077v2 GCA_000300775.2 False Anopheles stephensi Asian malaria mosquito (Indian Wild Type Walter Reed 2013) https://genome.ucsc.edu/h/GCA_000300775.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/300/775/GCA_000300775.2/genes/GCA_000300775.2_ASM30077v2.augustus.gtf.gz -Anopheles stephensi SDA-500 INSDC GCA_000349045.1 no 0 1110 0 Anopheles stephensi SDA-500 VectorBase 30069 GCA_000349045.1_Anop_step_SDA-500_V1 GCA_000349045.1 False Anopheles stephensi Asian malaria mosquito (SDA-500 2013) https://genome.ucsc.edu/h/GCA_000349045.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/349/045/GCA_000349045.1/genes/GCA_000349045.1_Anop_step_SDA-500_V1.augustus.gtf.gz -Anopheles stephensi UCISS2018 INSDC GCF_013141755.1 yes 0 491 3 Anopheles stephensi UCISS2018 VectorBase 30069 GCF_013141755.1_UCI_ANSTEP_V1.0 GCA_013141755.1 GCF_013141755.1 False Anopheles stephensi Asian malaria mosquito https://genome.ucsc.edu/h/GCF_013141755.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/013/141/755/GCF_013141755.1/genes/GCF_013141755.1_UCI_ANSTEP_V1.0.ncbiRefSeq.gtf.gz -Aspergillus tanneri NIH1004 INSDC GCA_004798825.1 yes 0 1715 0 Aspergillus tanneri NIH1004 FungiDB 1220188 GCA_004798825.1_ASM479882v1 GCA_004798825.1 False Aspergillus tanneri ascomycetes A.tanneri (NIH1004 2019) https://genome.ucsc.edu/h/GCA_004798825.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/798/825/GCA_004798825.1/genes/GCA_004798825.1_ASM479882v1.augustus.gtf.gz -Aspergillus thermomutatus strain HMR AF 39 INSDC GCA_002237265.2 yes 0 647 0 Aspergillus thermomutatus strain HMR AF 39 FungiDB 41047 GCF_002237265.1_ASM223726v2 GCA_002237265.2 GCF_002237265.1 True Aspergillus thermomutatus ascomycetes A.thermomutatus https://genome.ucsc.edu/h/GCF_002237265.1 -Acanthamoeba triangularis SH621 GenBank GCA_000826325.1 yes 0 56742 0 Acanthamoeba triangularis SH621 AmoebaDB 28015 GCA_000826325.1_Acanthamoeba_palestinensis GCA_000826325.1 False Acanthamoeba palestinensis A.palestinensis (2015) https://genome.ucsc.edu/h/GCA_000826325.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/826/325/GCA_000826325.1/genes/GCA_000826325.1_Acanthamoeba_palestinensis.augustus.gtf.gz -Apophysomyces variabilis NCCPF 102052 INSDC GCA_002749535.1 yes 0 411 0 Apophysomyces variabilis NCCPF 102052 FungiDB 760013 GCA_002749535.1_ASM274953v1 GCA_002749535.1 False Apophysomyces variabilis fungi A.variabilis (NCCPF 102052 2017) https://genome.ucsc.edu/h/GCA_002749535.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/749/535/GCA_002749535.1/genes/GCA_002749535.1_ASM274953v1.augustus.gtf.gz -Anopheles ziemanni AzieGA1 INSDC GCF_943734765.1 yes 0 416 3 Anopheles ziemanni AzieGA1 VectorBase 345580 GCF_943734765.1_idAnoZiCoDA_A2_x.2 GCA_943734765.2 GCF_943734765.1 False Anopheles ziemanni mosquito A.ziemanni (2023) https://genome.ucsc.edu/h/GCF_943734765.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/765/GCF_943734765.1/genes/GCF_943734765.1_idAnoZiCoDA_A2_x.2.ncbiRefSeq.gtf.gz -Blechomonas ayalai B08-376 GenBank GCA_020509355.1 yes 0 545 0 Blechomonas ayalai B08-376 TriTrypDB 1463230 GCA_020509355.1_ASM2050935v1 GCA_020509355.1 False Blechomonas ayalai Blechomonas ayalai (B08-376 2021) https://genome.ucsc.edu/h/GCA_020509355.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/509/355/GCA_020509355.1/genes/GCA_020509355.1_ASM2050935v1.augustus.gtf.gz -Beauveria bassiana HN6 INSDC GCA_014607475.1 yes 0 0 12 Beauveria bassiana HN6 FungiDB 176275 GCA_014607475.1_ASM1460747v1 GCA_014607475.1 False Beauveria bassiana ascomycetes B.bassiana (HN6 2020) https://genome.ucsc.edu/h/GCA_014607475.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/607/475/GCA_014607475.1/genes/GCA_014607475.1_ASM1460747v1.augustus.gtf.gz -Besnoitia besnoiti strain Bb-Ger1 GenBank GCA_002563875.1 yes 172 0 13 Besnoitia besnoiti strain Bb-Ger1 ToxoDB 94643 GCF_002563875.1_Bbes1.0 GCA_002563875.1 GCF_002563875.1 True Besnoitia besnoiti apicomplexans B.besnoiti (Bb-Ger1 2017) https://genome.ucsc.edu/h/GCF_002563875.1 -Babesia bigemina strain BOND GenBank GCA_000723445.1 yes 0 478 5 Babesia bigemina strain BOND PiroplasmaDB 5866 GCA_000723445.1_BBBOND_0001 GCA_000723445.1 False Babesia bigemina apicomplexans B.bigemina (BOND 2014) https://genome.ucsc.edu/h/GCA_000723445.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/723/445/GCA_000723445.1/genes/GCA_000723445.1_BBBOND_0001.augustus.gtf.gz -Babesia caballi USDA-D6B2 INSDC GCA_024862765.1 yes 0 7 0 Babesia caballi USDA-D6B2 PiroplasmaDB 5871 GCF_024862765.1_Bcaballi_D6B2_v1.0 GCA_024862765.1 GCF_024862765.1 False Babesia caballi apicomplexans B.caballi (USDA-D6B2 2022) https://genome.ucsc.edu/h/GCF_024862765.1 -Byssoonygena ceratinophila isolate UAMH 5669 GenBank GCA_001430925.1 yes 4851 0 0 Byssoonygena ceratinophila isolate UAMH 5669 FungiDB 166112 GCA_001430925.1_ASM143092v1 GCA_001430925.1 False Byssoonygena ceratinophila ascomycetes B.ceratinophila (UAMH 5669 2015) https://genome.ucsc.edu/h/GCA_001430925.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/430/925/GCA_001430925.1/genes/GCA_001430925.1_ASM143092v1.augustus.gtf.gz -Babesia divergens strain 1802A GenBank GCA_018398725.1 yes 0 79 0 Babesia divergens strain 1802A PiroplasmaDB 32595 GCA_018398725.1_ASM1839872v1 GCA_018398725.1 False Babesia divergens apicomplexans B.divergens (1802A 2021) https://genome.ucsc.edu/h/GCA_018398725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/018/398/725/GCA_018398725.1/genes/GCA_018398725.1_ASM1839872v1.augustus.gtf.gz -Babesia divergens strain Rouen 1987 GenBank GCA_001077455.2 no 0 141 0 Babesia divergens strain Rouen 1987 PiroplasmaDB 32595 GCA_001077455.2_ASM107745v2 GCA_001077455.2 False Babesia divergens apicomplexans B.divergens (Rouen 1987 2018) https://genome.ucsc.edu/h/GCA_001077455.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/077/455/GCA_001077455.2/genes/GCA_001077455.2_ASM107745v2.augustus.gtf.gz -Babesia duncani strain WA1 INSDC GCA_024586265.1 no 0 7 0 Babesia duncani strain WA1 PiroplasmaDB 323732 GCA_024586265.1_ASM2458626v1 GCA_024586265.1 False Babesia duncani apicomplexans B.duncani (WA1 2022) https://genome.ucsc.edu/h/GCA_024586265.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/024/586/265/GCA_024586265.1/genes/GCA_024586265.1_ASM2458626v1.augustus.gtf.gz -Babesia duncani strain WA1 2023 INSDC GCA_028658345.1 yes 0 160 5 Babesia duncani strain WA1 2023 PiroplasmaDB 323732 GCF_028658345.1_Bduncani_v1 GCA_028658345.1 GCF_028658345.1 True Babesia duncani apicomplexans B.duncani (WA1 2023) https://genome.ucsc.edu/h/GCF_028658345.1 -Biomphalaria glabrata XG47 INSDC GCF_947242115.1 yes 0 25 18 Biomphalaria glabrata XG47 VectorBase 6526 GCF_947242115.1_xgBioGlab47.1 GCA_947242115.1 GCF_947242115.1 False Biomphalaria glabrata bloodfluke planorb (primary hap 2022) https://genome.ucsc.edu/h/GCF_947242115.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/947/242/115/GCF_947242115.1/genes/GCF_947242115.1_xgBioGlab47.1.ncbiRefSeq.gtf.gz -Blumeria graminis f. sp. triticale THUN-12 INSDC GCA_905067625.1 no 0 25 11 Blumeria graminis f. sp. triticale THUN-12 FungiDB 1689686 GCA_905067625.1_Bgtriticale_THUN12_genome_v1_2 GCA_905067625.1 False Blumeria graminis f. sp. triticale grass mildew (THUN-12 2021) https://genome.ucsc.edu/h/GCA_905067625.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/905/067/625/GCA_905067625.1/genes/GCA_905067625.1_Bgtriticale_THUN12_genome_v1_2.augustus.gtf.gz -Blumeria hordei strain RACE1 INSDC GCA_900237765.1 yes 0 99 0 Blumeria hordei strain RACE1 FungiDB 2867405 GCA_900237765.1_BghRACE1_v1 GCA_900237765.1 False Blumeria hordei grass mildew (RACE1 RACE1 2018) https://genome.ucsc.edu/h/GCA_900237765.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/237/765/GCA_900237765.1/genes/GCA_900237765.1_BghRACE1_v1.augustus.gtf.gz -Bremia lactucae strain SF5 INSDC GCA_004359215.2 yes 0 201 19 Bremia lactucae strain SF5 FungiDB 4779 GCA_004359215.2_BlacSF5v2 GCA_004359215.2 GCF_004359215.1 True Bremia lactucae lettuce downy mildew (SF5 2021) https://genome.ucsc.edu/h/GCA_004359215.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/359/215/GCA_004359215.2/genes/GCA_004359215.2_BlacSF5v2.augustus.gtf.gz -Balamuthia mandrillaris strain 2046 INSDC GCA_001262475.1 no 0 14699 0 Balamuthia mandrillaris strain 2046 AmoebaDB 66527 GCA_001262475.1_ASM126247v1 GCA_001262475.1 False Balamuthia mandrillaris B.mandrillaris (2046 2015) https://genome.ucsc.edu/h/GCA_001262475.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/262/475/GCA_001262475.1/genes/GCA_001262475.1_ASM126247v1.augustus.gtf.gz -Balamuthia mandrillaris CDC-V039 INSDC GCA_001185145.1 yes 0 1604 0 Balamuthia mandrillaris CDC-V039 AmoebaDB 66527 GCA_001185145.1_ASM118514v1 GCA_001185145.1 False Balamuthia mandrillaris B.mandrillaris (CDC-V039 2015) https://genome.ucsc.edu/h/GCA_001185145.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/185/145/GCA_001185145.1/genes/GCA_001185145.1_ASM118514v1.augustus.gtf.gz -Babesia microti strain ATCC 30222 INSDC GCA_001650055.1 no 234 0 0 Babesia microti strain ATCC 30222 PiroplasmaDB 5868 GCA_001650055.1_ASM165005v1 GCA_001650055.1 False Babesia microti apicomplexans B.microti (ATCC 30222 2016) https://genome.ucsc.edu/h/GCA_001650055.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/650/055/GCA_001650055.1/genes/GCA_001650055.1_ASM165005v1.augustus.gtf.gz -Babesia microti strain ATCC PRA-99 GenBank GCA_001650065.1 no 82 0 0 Babesia microti strain ATCC PRA-99 PiroplasmaDB 5868 GCA_001650065.1_ASM165006v1 GCA_001650065.1 False Babesia microti apicomplexans B.microti (ATCC PRA-99 2016) https://genome.ucsc.edu/h/GCA_001650065.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/650/065/GCA_001650065.1/genes/GCA_001650065.1_ASM165006v1.augustus.gtf.gz -Babesia microti strain GI INSDC GCA_001650105.1 no 140 0 0 Babesia microti strain GI PiroplasmaDB 5868 GCA_001650105.1_ASM165010v1 GCA_001650105.1 False Babesia microti apicomplexans B.microti (GI 2016) https://genome.ucsc.edu/h/GCA_001650105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/650/105/GCA_001650105.1/genes/GCA_001650105.1_ASM165010v1.augustus.gtf.gz -Babesia microti strain GreenwichYale_Lab_strain_1 INSDC GCA_001650075.1 no 250 0 0 Babesia microti strain GreenwichYale_Lab_strain_1 PiroplasmaDB 5868 GCA_001650075.1_ASM165007v1 GCA_001650075.1 False Babesia microti apicomplexans B.microti (GreenwichYale_Lab_strain_1 2016) https://genome.ucsc.edu/h/GCA_001650075.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/650/075/GCA_001650075.1/genes/GCA_001650075.1_ASM165007v1.augustus.gtf.gz -Babesia microti Nan_Hs_2011_N11-50 INSDC GCA_001650145.1 no 131 0 0 Babesia microti Nan_Hs_2011_N11-50 PiroplasmaDB 5868 GCA_001650145.1_ASM165014v1 GCA_001650145.1 False Babesia microti apicomplexans B.microti (Nan_Hs_2011_N11-50 2016) https://genome.ucsc.edu/h/GCA_001650145.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/650/145/GCA_001650145.1/genes/GCA_001650145.1_ASM165014v1.augustus.gtf.gz -Babesia microti strain Naushon INSDC GCA_001650135.1 no 131 0 0 Babesia microti strain Naushon PiroplasmaDB 5868 GCA_001650135.1_ASM165013v1 GCA_001650135.1 False Babesia microti apicomplexans B.microti (Naushon 2016) https://genome.ucsc.edu/h/GCA_001650135.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/650/135/GCA_001650135.1/genes/GCA_001650135.1_ASM165013v1.augustus.gtf.gz -Blastocrithidia nonstop P57 INSDC GCA_028554745.1 yes 0 77 0 Blastocrithidia nonstop P57 TriTrypDB 2592485 GCA_028554745.1_ASM2855474v1 GCA_028554745.1 False Blastocrithidia sp. p57 Blastocrithidia sp. (p57 2023) https://genome.ucsc.edu/h/GCA_028554745.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/028/554/745/GCA_028554745.1/genes/GCA_028554745.1_ASM2855474v1.augustus.gtf.gz -Babesia ovata strain Miyake GenBank GCA_002897235.1 yes 91 0 0 Babesia ovata strain Miyake PiroplasmaDB 189622 GCF_002897235.1_Bovata_7.1 GCA_002897235.1 GCF_002897235.1 True Babesia ovata apicomplexans B.ovata (Miyake 2017) https://genome.ucsc.edu/h/GCF_002897235.1 -Blastomyces percursus strain EI222 INSDC GCA_001883805.1 yes 0 3868 0 Blastomyces percursus strain EI222 FungiDB 1658174 GCA_001883805.1_Blas_perc_EI222_V1 GCA_001883805.1 False Blastomyces percursus ascomycetes B.percursus (EI222 2016) https://genome.ucsc.edu/h/GCA_001883805.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/883/805/GCA_001883805.1/genes/GCA_001883805.1_Blas_perc_EI222_V1.augustus.gtf.gz -Bodo saltans strain Lake Konstanz GenBank GCA_001460835.1 yes 0 2256 0 Bodo saltans strain Lake Konstanz TriTrypDB 75058 GCA_001460835.1_BSAL GCA_001460835.1 False Bodo saltans Bodo saltans (Lake Konstanz 2015) https://genome.ucsc.edu/h/GCA_001460835.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/460/835/GCA_001460835.1/genes/GCA_001460835.1_BSAL.augustus.gtf.gz -Babesia sp. Xinjiang Xinjiang GenBank GCA_002095265.1 yes 0 215 0 Babesia sp. Xinjiang Xinjiang PiroplasmaDB 462227 GCF_002095265.1_B_xinjiang1.0 GCA_002095265.1 GCF_002095265.1 True Babesia sp. Xinjiang apicomplexans B.sp. (Xinjiang 2017) https://genome.ucsc.edu/h/GCF_002095265.1 -Cryptosporidium andersoni isolate 30847 GenBank GCA_001865355.1 yes 135 0 0 Cryptosporidium andersoni isolate 30847 CryptoDB 117008 GCF_001865355.1_ASM186535v1 GCA_001865355.1 GCF_001865355.1 True Cryptosporidium andersoni apicomplexans C.andersoni (30847 2016) https://genome.ucsc.edu/h/GCF_001865355.1 -Candida auris strain 6684 INSDC GCA_001189475.1 no 0 99 0 [Candida] auris 6684 FungiDB 498019 GCF_001189475.1_ASM118947v1 GCA_001189475.1 GCF_001189475.1 True Candida auris budding yeast C.auris (6684 2015 refseq) https://genome.ucsc.edu/h/GCF_001189475.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/189/475/GCA_001189475.1/genes/GCA_001189475.1_ASM118947v1.augustus.gtf.gz -Candida auris strain B11220 INSDC GCA_003013715.2 no 0 0 7 [Candida] auris B11220 FungiDB 498019 GCF_003013715.1_ASM301371v2 GCA_003013715.2 GCF_003013715.1 True Candidozyma auris budding yeast C.auris (B11220 2019) https://genome.ucsc.edu/h/GCF_003013715.1 -Candida auris strain B11221 INSDC GCA_002775015.1 no 0 20 0 [Candida] auris B11221 FungiDB 498019 GCF_002775015.1_Cand_auris_B11221_V1 GCA_002775015.1 GCF_002775015.1 True Candida auris budding yeast C.auris (B11221 2017 refseq) https://genome.ucsc.edu/h/GCF_002775015.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/775/015/GCA_002775015.1/genes/GCA_002775015.1_Cand_auris_B11221_V1.augustus.gtf.gz -Candida auris strain B11243 INSDC GCA_003014415.1 no 0 238 0 [Candida] auris B11243 FungiDB 498019 GCA_003014415.1_Cand_auris_B11243 GCA_003014415.1 False Candidozyma auris budding yeast C.auris (B11243 2018) https://genome.ucsc.edu/h/GCA_003014415.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/014/415/GCA_003014415.1/genes/GCA_003014415.1_Cand_auris_B11243.augustus.gtf.gz -Candida auris strain B11245 INSDC GCA_008275145.1 no 0 0 7 [Candida] auris B11245 FungiDB 498019 GCA_008275145.1_ASM827514v1 GCA_008275145.1 False Candidozyma auris budding yeast C.auris (B11245 2019) https://genome.ucsc.edu/h/GCA_008275145.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/008/275/145/GCA_008275145.1/genes/GCA_008275145.1_ASM827514v1.augustus.gtf.gz -Cryptosporidium baileyi TAMU-09Q1 GenBank GCA_001593455.1 yes 153 0 0 Cryptosporidium baileyi TAMU-09Q1 CryptoDB 27987 GCA_001593455.1_CryBaiTAMU-09Q1-1.0 GCA_001593455.1 False Cryptosporidium baileyi apicomplexans C.baileyi (TAMU-09Q1 2016) https://genome.ucsc.edu/h/GCA_001593455.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/593/455/GCA_001593455.1/genes/GCA_001593455.1_CryBaiTAMU-09Q1-1.0.augustus.gtf.gz -Cryptosporidium bovis isolate 45015 INSDC GCA_009768925.2 yes 0 55 0 Cryptosporidium bovis isolate 45015 CryptoDB 310047 GCF_009768925.1_ASM976892v2 GCA_009768925.2 GCF_009768925.1 True Cryptosporidium bovis apicomplexans C.bovis (45015 2021) https://genome.ucsc.edu/h/GCF_009768925.1 -Cladophialophora carrionii KSF GenBank GCA_001700775.1 yes 22 0 0 Cladophialophora carrionii KSF FungiDB 86049 GCA_001700775.1_ASM170077v1 GCA_001700775.1 False Cladophialophora carrionii ascomycetes C.carrionii (KSF 2016) https://genome.ucsc.edu/h/GCA_001700775.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/700/775/GCA_001700775.1/genes/GCA_001700775.1_ASM170077v1.augustus.gtf.gz -Cyclospora cayetanensis strain CHN_HEN01 GenBank GCA_000769155.2 yes 2297 0 0 Cyclospora cayetanensis strain CHN_HEN01 ToxoDB 88456 GCF_000769155.1_ASM76915v2 GCA_000769155.2 GCF_000769155.1 True Cyclospora cayetanensis apicomplexans C.cayetanensis (CHN_HEN01 2016) https://genome.ucsc.edu/h/GCF_000769155.1 -Cyclospora cayetanensis isolate NF1_C8 GenBank GCF_002999335.1 no 738 0 0 Cyclospora cayetanensis isolate NF1_C8 ToxoDB 88456 GCF_002999335.1_CcayRef3 GCA_002999335.1 GCF_002999335.1 True Cyclospora cayetanensis apicomplexans C.cayetanensis (NF1_C8 2018) https://genome.ucsc.edu/h/GCF_002999335.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/002/999/335/GCF_002999335.1/genes/GCF_002999335.1_CcayRef3.ncbiRefSeq.gtf.gz -Cryptococcus cf. gattii MF34 INSDC GCA_009650685.1 yes 0 2 13 Cryptococcus cf. gattii MF34 FungiDB 2268382 GCA_009650685.1_Cryp_gatt_MF34 GCA_009650685.1 False Cryptococcus gattii VGV basidiomycetes C.gattii VGV (MF34 2019) https://genome.ucsc.edu/h/GCA_009650685.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/650/685/GCA_009650685.1/genes/GCA_009650685.1_Cryp_gatt_MF34.augustus.gtf.gz -Coprinopsis cinerea #326 INSDC GCA_016772295.1 no 0 31 0 Coprinopsis cinerea #326 FungiDB 1132390 GCA_016772295.1_ASM1677229v1 GCA_016772295.1 False Coprinopsis cinerea AmutBmut pab1-1 basidiomycetes C.cinerea (A43mut B43mut pab1-1 #326 2021) https://genome.ucsc.edu/h/GCA_016772295.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/016/772/295/GCA_016772295.1/genes/GCA_016772295.1_ASM1677229v1.augustus.gtf.gz -Curvularia clavata yc1106 INSDC GCA_023920165.1 yes 0 0 8 Curvularia clavata yc1106 FungiDB 95742 GCA_023920165.1_ASM2392016v1 GCA_023920165.1 False Curvularia clavata ascomycetes C.clavata (yc1106 2022) https://genome.ucsc.edu/h/GCA_023920165.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/023/920/165/GCA_023920165.1/genes/GCA_023920165.1_ASM2392016v1.augustus.gtf.gz -Cucumispora dikerogammari Dv6 INSDC GCA_014805705.1 yes 0 7783 0 Cucumispora dikerogammari Dv6 MicrosporidiaDB 658444 GCA_014805705.1_ASM1480570v1 GCA_014805705.1 False Cucumispora dikerogammari microsporidians C.dikerogammari (Dv6 2020) https://genome.ucsc.edu/h/GCA_014805705.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/805/705/GCA_014805705.1/genes/GCA_014805705.1_ASM1480570v1.augustus.gtf.gz -Candida duobushaemulonis strain B09383 GenBank GCA_002926085.1 yes 7 0 0 [Candida] duobushaemulonis B09383 FungiDB 1231522 GCF_002926085.2_CanDuoHae_v1.0 GCA_002926085.1 GCF_002926085.2 True Candidozyma duobushaemuli budding yeast C.duobushaemulonis https://genome.ucsc.edu/h/GCF_002926085.2 -Cyberlindnera fabianii 65 INSDC GCA_001983305.1 yes 0 25 0 Cyberlindnera fabianii 65 FungiDB 36022 GCA_001983305.1_ASM198330v1 GCA_001983305.1 False Cyberlindnera fabianii budding yeast C.fabianii (65 2017) https://genome.ucsc.edu/h/GCA_001983305.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/983/305/GCA_001983305.1/genes/GCA_001983305.1_ASM198330v1.augustus.gtf.gz -Crithidia fasciculata strain Cf-Cl GenBank GCA_000331325.2 yes 0 427 30 Crithidia fasciculata strain Cf-Cl TriTrypDB 5656 GCA_000331325.2_Crithidia_fasciculata-14.0 GCA_000331325.2 False Crithidia fasciculata Crithidia fasciculata (Cf-Cl 2015) https://genome.ucsc.edu/h/GCA_000331325.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/331/325/GCA_000331325.2/genes/GCA_000331325.2_Crithidia_fasciculata-14.0.augustus.gtf.gz -Cytauxzoon felis strain Winnie INSDC GCA_020283715.1 yes 0 358 0 Cytauxzoon felis strain Winnie PiroplasmaDB 27996 GCA_020283715.1_ASM2028371v1 GCA_020283715.1 False Cytauxzoon felis apicomplexans C.felis (Winnie 2021) https://genome.ucsc.edu/h/GCA_020283715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/283/715/GCA_020283715.1/genes/GCA_020283715.1_ASM2028371v1.augustus.gtf.gz -Candida haemulonis B11899 GenBank GCA_002926055.1 yes 11 0 0 [Candida] haemuloni B11899 FungiDB 45357 GCF_002926055.2_CanHae_1.0 GCA_002926055.1 GCF_002926055.2 True Candidozyma haemuli budding yeast C.haemuloni https://genome.ucsc.edu/h/GCF_002926055.2 -Cryptosporidium hominis isolate 30976 GenBank GCA_001483515.1 no 53 0 0 Cryptosporidium hominis isolate 30976 CryptoDB 237895 GCA_001483515.1_ASM148351v1 GCA_001483515.1 False Cryptosporidium hominis apicomplexans C.hominis (30976 2015) https://genome.ucsc.edu/h/GCA_001483515.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/483/515/GCA_001483515.1/genes/GCA_001483515.1_ASM148351v1.augustus.gtf.gz -Cryptosporidium hominis 37999 GenBank GCA_000804495.1 no 78 0 0 Cryptosporidium hominis 37999 CryptoDB 237895 GCA_000804495.1_ASM80449v1 GCA_000804495.1 False Cryptosporidium hominis apicomplexans C.hominis (37999 2014) https://genome.ucsc.edu/h/GCA_000804495.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/804/495/GCA_000804495.1/genes/GCA_000804495.1_ASM80449v1.augustus.gtf.gz -Cryptosporidium hominis isolate TU502_2012 GenBank GCA_001593465.1 no 119 0 0 Cryptosporidium hominis isolate TU502_2012 CryptoDB 237895 GCA_001593465.1_CryHomTU502-1.0 GCA_001593465.1 False Cryptosporidium hominis apicomplexans C.hominis (TU502_2012 2016) https://genome.ucsc.edu/h/GCA_001593465.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/593/465/GCA_001593465.1/genes/GCA_001593465.1_CryHomTU502-1.0.augustus.gtf.gz -Cryptosporidium hominis UKH1 GenBank GCA_001593475.1 no 156 0 0 Cryptosporidium hominis UKH1 CryptoDB 237895 GCA_001593475.1_CryHomUKH1-1.0 GCA_001593475.1 False Cryptosporidium hominis apicomplexans C.hominis (UKH1 2016) https://genome.ucsc.edu/h/GCA_001593475.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/593/475/GCA_001593475.1/genes/GCA_001593475.1_CryHomUKH1-1.0.augustus.gtf.gz -Cryptosporidium hominis UdeA01 GenBank GCA_002223825.1 no 0 0 8 Cryptosporidium hominis UdeA01 CryptoDB 237895 GCA_002223825.1_C.hominis.v1 GCA_002223825.1 False Cryptosporidium hominis apicomplexans C.hominis (2015) https://genome.ucsc.edu/h/GCA_002223825.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/223/825/GCA_002223825.1/genes/GCA_002223825.1_C.hominis.v1.augustus.gtf.gz -Cladophialophora immunda strain CBS 83496 GenBank GCA_000835495.1 yes 0 277 0 Cladophialophora immunda strain CBS 83496 FungiDB 569365 GCF_000835495.1_Clad_immu_CBS83496_V1 GCA_000835495.1 GCF_000835495.1 True Cladophialophora immunda ascomycetes C.immunda https://genome.ucsc.edu/h/GCF_000835495.1 -Coccidioides immitis WA_211 INSDC GCA_004115165.2 no 0 62 0 Coccidioides immitis WA_211 FungiDB 5501 GCA_004115165.2_Cimm211_ragoo GCA_004115165.2 False Coccidioides immitis ascomycetes C.immitis (WA_211 2019) https://genome.ucsc.edu/h/GCA_004115165.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/115/165/GCA_004115165.2/genes/GCA_004115165.2_Cimm211_ragoo.augustus.gtf.gz -Cimex lectularius Harlan INSDC GCA_000648675.3 yes 1156 417 0 Cimex lectularius Harlan VectorBase 79782 GCF_000648675.2_Clec_2.1 GCA_000648675.3 GCF_000648675.2 False Cimex lectularius bed bug https://genome.ucsc.edu/h/GCF_000648675.2 -Canis lupus familiaris isolate SID07034 INSDC GCA_014441545.1 yes 0 336 40 Canis lupus familiaris isolate SID07034 HostDB 9615 GCF_014441545.1_ROS_Cfam_1.0 GCA_014441545.1 GCF_014441545.1 False Canis lupus familiaris dog (labrador SID07034 2020) https://genome.ucsc.edu/h/GCF_014441545.1 -Cryptosporidium meleagridis strain UKMEL1 GenBank GCA_001593445.1 yes 57 0 0 Cryptosporidium meleagridis strain UKMEL1 CryptoDB 93969 GCA_001593445.1_CryMelUKMEL1-1.0 GCA_001593445.1 False Cryptosporidium meleagridis apicomplexans C.meleagridis (UKMEL1 2016) https://genome.ucsc.edu/h/GCA_001593445.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/593/445/GCA_001593445.1/genes/GCA_001593445.1_CryMelUKMEL1-1.0.augustus.gtf.gz -Candida metapsilosis BP57 INSDC GCA_017655625.1 yes 0 9 0 Candida metapsilosis BP57 FungiDB 273372 GCA_017655625.1_BP57 GCA_017655625.1 GCF_017655625.1 True Candida metapsilosis budding yeast C.metapsilosis (2021) https://genome.ucsc.edu/h/GCA_017655625.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/655/625/GCA_017655625.1/genes/GCA_017655625.1_BP57.augustus.gtf.gz -Cordyceps militaris ATCC 34164 INSDC GCA_008080495.1 yes 0 0 7 Cordyceps militaris ATCC 34164 FungiDB 73501 GCA_008080495.1_ASM808049v1 GCA_008080495.1 False Cordyceps militaris ascomycetes C.militaris (ATCC 34164 2017) https://genome.ucsc.edu/h/GCA_008080495.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/008/080/495/GCA_008080495.1/genes/GCA_008080495.1_ASM808049v1.augustus.gtf.gz -Cryptococcus neoformans var. grubii H99 2018 INSDC GCA_003011985.1 no 0 14 0 Cryptococcus neoformans var. grubii H99 2018 FungiDB 178876 GCA_003011985.1_ASM301198v1 GCA_003011985.1 False Cryptococcus neoformans var. grubii basidiomycetes C.neoformans var. grubii (H99 2018) https://genome.ucsc.edu/h/GCA_003011985.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/011/985/GCA_003011985.1/genes/GCA_003011985.1_ASM301198v1.augustus.gtf.gz -Cryptococcus neoformans var. grubii KN99 GenBank GCA_002216725.1 no 0 0 14 Cryptococcus neoformans var. grubii KN99 FungiDB 178876 GCA_002216725.1_ASM221672v1 GCA_002216725.1 False Cryptococcus neoformans var. grubii basidiomycetes C.neoformans var. grubii (KN99 2017) https://genome.ucsc.edu/h/GCA_002216725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/216/725/GCA_002216725.1/genes/GCA_002216725.1_ASM221672v1.augustus.gtf.gz -Cryptococcus neoformans strain:VNII INSDC GCA_022832995.1 no 0 0 14 Cryptococcus neoformans strain:VNII FungiDB 5207 GCA_022832995.1_ASM2283299v1 GCA_022832995.1 False Cryptococcus neoformans basidiomycetes C.neoformans (VNII 2022) https://genome.ucsc.edu/h/GCA_022832995.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/022/832/995/GCA_022832995.1/genes/GCA_022832995.1_ASM2283299v1.augustus.gtf.gz -Cryptosporidium parvum 2022 INSDC GCA_019844115.2 no 0 0 8 Cryptosporidium parvum 2022 CryptoDB 5807 GCA_019844115.2_ASM1984411v2 GCA_019844115.2 False Cryptosporidium parvum apicomplexans C.parvum (2021) https://genome.ucsc.edu/h/GCA_019844115.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/019/844/115/GCA_019844115.2/genes/GCA_019844115.2_ASM1984411v2.augustus.gtf.gz -Cryptosporidium parvum IOWA-ATCC GenBank GCA_015245375.1 no 0 0 8 Cryptosporidium parvum IOWA-ATCC CryptoDB 5807 GCA_015245375.1_ASM1524537v1 GCA_015245375.1 False Cryptosporidium parvum apicomplexans C.parvum (IOWA-ATCC 2020) https://genome.ucsc.edu/h/GCA_015245375.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/015/245/375/GCA_015245375.1/genes/GCA_015245375.1_ASM1524537v1.augustus.gtf.gz -Cavia porcellus 2N INSDC GCA_000151735.1 yes 0 3143 0 Cavia porcellus 2N HostDB 10141 GCF_000151735.1_Cavpor3.0 GCA_000151735.1 GCF_000151735.1 False Cavia porcellus domestic guinea pig (2N 2008 refseq) https://genome.ucsc.edu/h/GCF_000151735.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/151/735/GCA_000151735.1/genes/GCA_000151735.1_Cavpor3.0.ncbiRefSeq.gtf.gz -Coccidioides posadasii strain Silveira 2022 INSDC GCA_018416015.2 no 0 0 8 Coccidioides posadasii strain Silveira 2022 FungiDB 443226 GCA_018416015.2_ASM1841601v2 GCA_018416015.2 GCF_018416015.1 False Coccidioides posadasii str. Silveira ascomycetes C.posadasii str. (Silveira 2022) https://genome.ucsc.edu/h/GCA_018416015.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/018/416/015/GCA_018416015.2/genes/GCA_018416015.2_ASM1841601v2.augustus.gtf.gz -Candida pseudohaemulonii strain B12108 INSDC GCA_003013735.1 yes 0 36 0 [Candida] pseudohaemulonis B12108 FungiDB 418784 GCF_003013735.1_Cand_pseudohaemulonii_B12108 GCA_003013735.1 GCF_003013735.1 True Candidozyma pseudohaemuli budding yeast C.pseudohaemulonis https://genome.ucsc.edu/h/GCF_003013735.1 -Chrysosporium queenslandicum isolate CBS 280.77 GenBank GCA_001430955.1 yes 2724 0 0 Chrysosporium queenslandicum isolate CBS 280.77 FungiDB 264361 GCA_001430955.1_ASM143095v1 GCA_001430955.1 False Chrysosporium queenslandicum ascomycetes C.queenslandicum (CBS 280.77 2015) https://genome.ucsc.edu/h/GCA_001430955.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/430/955/GCA_001430955.1/genes/GCA_001430955.1_ASM143095v1.augustus.gtf.gz -Culex quinquefasciatus JHB 2020 INSDC GCA_015732765.1 yes 53 0 3 Culex quinquefasciatus JHB 2020 VectorBase 7176 GCF_015732765.1_VPISU_Cqui_1.0_pri_paternal GCA_015732765.1 GCF_015732765.1 False Culex quinquefasciatus southern house mosquito https://genome.ucsc.edu/h/GCF_015732765.1 -Culex quinquefasciatus Johannesburg INSDC GCA_000209185.1 no 0 3171 0 Culex quinquefasciatus Johannesburg VectorBase 7176 GCF_000209185.1_CulPip1.0 GCA_000209185.1 GCF_000209185.1 True Culex quinquefasciatus southern house mosquito (JHB 2007) https://genome.ucsc.edu/h/GCF_000209185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/209/185/GCA_000209185.1/genes/GCA_000209185.1_CulPip1.0.augustus.gtf.gz -Cryptosporidium ryanae 45019 INSDC GCA_009792415.2 yes 0 93 0 Cryptosporidium ryanae 45019 CryptoDB 515981 GCF_009792415.1_ASM979241v2 GCA_009792415.2 GCF_009792415.1 True Cryptosporidium ryanae apicomplexans C.ryanae (45019 2022) https://genome.ucsc.edu/h/GCF_009792415.1 -Cryptosporidium sp. chipmunk genotype I strain 37763 INSDC GCA_004936735.2 yes 0 50 0 Cryptosporidium sp. chipmunk genotype I strain 37763 CryptoDB 1280935 GCA_004936735.2_CCh_genotype_I GCA_004936735.2 GCF_004936735.1 True Cryptosporidium sp. chipmunk genotype I apicomplexans C.sp. chipmunk genotype I (37763 2021) https://genome.ucsc.edu/h/GCA_004936735.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/936/735/GCA_004936735.2/genes/GCA_004936735.2_CCh_genotype_I.augustus.gtf.gz -Cystoisospora suis strain Wien I GenBank GCA_002600585.1 yes 14627 0 0 Cystoisospora suis strain Wien I ToxoDB 483139 GCF_002600585.1_ASM260058v1 GCA_002600585.1 GCF_002600585.1 False Cystoisospora suis apicomplexans C.suis (Wien I 2017) https://genome.ucsc.edu/h/GCF_002600585.1 -Candida tropicalis MYA-3404 2020 INSDC GCA_013177555.1 no 0 0 7 Candida tropicalis MYA-3404 2020 FungiDB 5482 GCA_013177555.1_ASM1317755v1 GCA_013177555.1 False Candida tropicalis budding yeast C.tropicalis (MYA-3404 2020) https://genome.ucsc.edu/h/GCA_013177555.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/177/555/GCA_013177555.1/genes/GCA_013177555.1_ASM1317755v1.augustus.gtf.gz -Cryptosporidium tyzzeri isolate UGA55 GenBank GCA_007210665.1 yes 3 0 8 Cryptosporidium tyzzeri isolate UGA55 CryptoDB 756076 GCA_007210665.1_Ctyz_UGA_55 GCA_007210665.1 False Cryptosporidium tyzzeri apicomplexans C.tyzzeri (UGA55 2019) https://genome.ucsc.edu/h/GCA_007210665.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/007/210/665/GCA_007210665.1/genes/GCA_007210665.1_Ctyz_UGA_55.augustus.gtf.gz -Cryptosporidium ubiquitum isolate 39726 GenBank GCA_001865345.1 yes 39 0 0 Cryptosporidium ubiquitum isolate 39726 CryptoDB 857276 GCF_001865345.1_ASM186534v1 GCA_001865345.1 GCF_001865345.1 True Cryptosporidium ubiquitum apicomplexans C.ubiquitum (39726 2016) https://genome.ucsc.edu/h/GCF_001865345.1 -Dermacentor andersoni qqDerAnde1.1 INSDC GCA_023375915.1 no 0 8198 0 Dermacentor andersoni qqDerAnde1.1 VectorBase 34620 GCA_023375915.1_qqDerAnde1.1_alternate_haplotype GCA_023375915.1 False Dermacentor andersoni mite/tick D.andersoni (qqDerAnde1 alternate hap 2022) https://genome.ucsc.edu/h/GCA_023375915.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/023/375/915/GCA_023375915.1/genes/GCA_023375915.1_qqDerAnde1.1_alternate_haplotype.augustus.gtf.gz -Dermacentor andersoni qqDerAnde1.2 INSDC GCF_023375885.1 yes 0 3118 0 Dermacentor andersoni qqDerAnde1.2 VectorBase 34620 GCF_023375885.1_qqDerAnde1.2 GCA_023375885.2 GCF_023375885.1 False Dermacentor andersoni mites & ticks D.andersoni (primary hap 2022) https://genome.ucsc.edu/h/GCF_023375885.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/023/375/885/GCF_023375885.1/genes/GCF_023375885.1_qqDerAnde1.2.ncbiRefSeq.gtf.gz -Debaryomyces fabryi CBS 789 INSDC GCA_001447935.2 yes 0 534 0 Debaryomyces fabryi CBS 789 FungiDB 58627 GCF_001447935.2_debFab1.1 GCA_001447935.2 GCF_001447935.2 True Debaryomyces fabryi budding yeast D.fabryi https://genome.ucsc.edu/h/GCF_001447935.2 -Drosophila melanogaster iso-1 INSDC GCA_000001215.4 yes 0 1862 7 Drosophila melanogaster iso-1 VectorBase 7227 GCF_000001215.4_Release_6_plus_ISO1_MT GCA_000001215.4 GCF_000001215.4 True Drosophila melanogaster fly D.melanogaster https://genome.ucsc.edu/h/GCF_000001215.4 -Dictyocoela muelleri Ou54 INSDC GCA_016256075.1 yes 0 11522 0 Dictyocoela muelleri Ou54 MicrosporidiaDB 279532 GCA_016256075.1_ASM1625607v1 GCA_016256075.1 False Dictyocoela muelleri microsporidians D.muelleri (Ou54 2020) https://genome.ucsc.edu/h/GCA_016256075.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/016/256/075/GCA_016256075.1/genes/GCA_016256075.1_ASM1625607v1.augustus.gtf.gz -Dictyostelium purpureum QSDP1 INSDC GCF_000190715.1 yes 0 799 0 Dictyostelium purpureum QSDP1 AmoebaDB 5786 GCA_000190715.1_v1.0 GCA_000190715.1 GCF_000190715.1 True Dictyostelium purpureum cellular slime molds (QSDP1 2011) https://genome.ucsc.edu/h/GCA_000190715.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/190/715/GCF_000190715.1/genes/GCF_000190715.1_v1.0.augustus.gtf.gz -Dictyocoela roeselum Ou19 INSDC GCA_016255985.1 yes 0 1033 0 Dictyocoela roeselum Ou19 MicrosporidiaDB 288439 GCA_016255985.1_ASM1625598v1 GCA_016255985.1 False Dictyocoela roeselum microsporidians D.roeselum (Ou19 2020) https://genome.ucsc.edu/h/GCA_016255985.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/016/255/985/GCA_016255985.1/genes/GCA_016255985.1_ASM1625598v1.augustus.gtf.gz -Diutina rugosa CBS 613 INSDC GCA_008704595.1 yes 0 169 0 Diutina rugosa CBS 613 FungiDB 5481 GCF_008704595.1_ASM870459v1 GCA_008704595.1 GCF_008704595.1 True Diutina rugosa budding yeast D.rugosa https://genome.ucsc.edu/h/GCF_008704595.1 -Dermacentor silvarum Dsil-2018 INSDC GCA_013339745.2 yes 0 1653 11 Dermacentor silvarum Dsil-2018 VectorBase 543639 GCF_013339745.2_BIME_Dsil_1.4 GCA_013339745.2 GCF_013339745.2 False Dermacentor silvarum mites & ticks D.silvarum (v2 Dsil-2018 2022) https://genome.ucsc.edu/h/GCF_013339745.2 -Eimeria acervulina Houghton GenBank GCA_000499425.1 yes 0 3415 0 Eimeria acervulina Houghton ToxoDB 5801 GCF_000499425.1_EAH001 GCA_000499425.1 GCF_000499425.1 True Eimeria acervulina apicomplexans E.acervulina (Houghton 2013) https://genome.ucsc.edu/h/GCF_000499425.1 -Emergomyces africanus CBS 136260 INSDC GCA_001660665.1 yes 0 4444 0 Emergomyces africanus CBS 136260 FungiDB 1955775 GCA_001660665.1_Emmo_afri_EA111 GCA_001660665.1 False Emergomyces africanus ascomycetes E.africanus (CBS 136260 2016) https://genome.ucsc.edu/h/GCA_001660665.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/660/665/GCA_001660665.1/genes/GCA_001660665.1_Emmo_afri_EA111.augustus.gtf.gz -Eimeria brunetti Houghton GenBank GCA_000499725.1 yes 0 8575 0 Eimeria brunetti Houghton ToxoDB 51314 GCA_000499725.1_EBH001 GCA_000499725.1 False Eimeria brunetti apicomplexans E.brunetti (Houghton 2013) https://genome.ucsc.edu/h/GCA_000499725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/499/725/GCA_000499725.1/genes/GCA_000499725.1_EBH001.augustus.gtf.gz -Enterospora canceri strain GB1 GenBank GCA_002087915.1 yes 537 0 0 Enterospora canceri strain GB1 MicrosporidiaDB 1081671 GCA_002087915.1_ASM208791v1 GCA_002087915.1 False Enterospora canceri microsporidians E.canceri (GB1 2017) https://genome.ucsc.edu/h/GCA_002087915.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/087/915/GCA_002087915.1/genes/GCA_002087915.1_ASM208791v1.augustus.gtf.gz -Eimeria falciformis Bayer Haberkorn 1970 GenBank GCA_002271815.1 yes 751 0 0 Eimeria falciformis Bayer Haberkorn 1970 ToxoDB 84963 GCA_002271815.1_ASM227181v1 GCA_002271815.1 False Eimeria falciformis apicomplexans E.falciformis (Bayer Haberkorn 1970 2017) https://genome.ucsc.edu/h/GCA_002271815.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/271/815/GCA_002271815.1/genes/GCA_002271815.1_ASM227181v1.augustus.gtf.gz -Encephalitozoon hellem Swiss GenBank GCA_018342045.1 no 0 32 0 Encephalitozoon hellem Swiss MicrosporidiaDB 27973 GCA_018342045.1_Swiss_hellem_version_1 GCA_018342045.1 False Encephalitozoon hellem microsporidians E.hellem (Swiss 2021) https://genome.ucsc.edu/h/GCA_018342045.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/018/342/045/GCA_018342045.1/genes/GCA_018342045.1_Swiss_hellem_version_1.augustus.gtf.gz -Enterocytozoon hepatopenaei EHP-ID16 INSDC GCA_003709115.1 no 0 162 0 Enterocytozoon hepatopenaei EHP-ID16 MicrosporidiaDB 646526 GCA_003709115.1_ASM370911v1 GCA_003709115.1 False Ecytonucleospora hepatopenaei microsporidians E.hepatopenaei (EHP-ID16 2018) https://genome.ucsc.edu/h/GCA_003709115.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/709/115/GCA_003709115.1/genes/GCA_003709115.1_ASM370911v1.augustus.gtf.gz -Enterocytozoon hepatopenaei strain TH1 GenBank GCA_002081675.1 yes 62 0 0 Enterocytozoon hepatopenaei strain TH1 MicrosporidiaDB 646526 GCA_002081675.1_ASM208167v1 GCA_002081675.1 False Ecytonucleospora hepatopenaei microsporidians E.hepatopenaei (TH1 2017) https://genome.ucsc.edu/h/GCA_002081675.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/081/675/GCA_002081675.1/genes/GCA_002081675.1_ASM208167v1.augustus.gtf.gz -Entamoeba histolytica Rahman INSDC GCA_917563895.1 no 0 18523 0 Entamoeba histolytica Rahman AmoebaDB 294381 GCA_917563895.1_Assembly_1 GCA_917563895.1 False Entamoeba histolytica HM-1:IMSS E.histolytica HM-1:IMSS (Rahman 2021) https://genome.ucsc.edu/h/GCA_917563895.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/917/563/895/GCA_917563895.1/genes/GCA_917563895.1_Assembly_1.augustus.gtf.gz -Eimeria maxima Weybridge GenBank GCA_000499605.1 yes 0 3564 0 Eimeria maxima Weybridge ToxoDB 5804 GCF_000499605.1_EMW001 GCA_000499605.1 GCF_000499605.1 True Eimeria maxima apicomplexans E.maxima (Weybridge 2013) https://genome.ucsc.edu/h/GCF_000499605.1 -Exophiala mesophila strain CBS 40295 GenBank GCA_000836275.1 yes 0 9 0 Exophiala mesophila strain CBS 40295 FungiDB 212818 GCF_000836275.1_Exop_meso_CBS40295_V1 GCA_000836275.1 GCF_000836275.1 True Exophiala mesophila ascomycetes E.mesophila https://genome.ucsc.edu/h/GCF_000836275.1 -Eimeria mitis Houghton GenBank GCA_000499745.2 yes 0 15978 0 Eimeria mitis Houghton ToxoDB 44415 GCF_000499745.2_EMH001 GCA_000499745.2 GCF_000499745.2 True Eimeria mitis apicomplexans E.mitis (Houghton 2013) https://genome.ucsc.edu/h/GCF_000499745.2 -Endotrypanum monterogeii strain LV88 GenBank GCA_000333855.2 yes 0 1925 36 Endotrypanum monterogeii strain LV88 TriTrypDB 5705 GCA_000333855.2_Endotrypanum_monterogeii-LV88-1.0.3 GCA_000333855.2 False Endotrypanum monterogeii Endotrypanum monterogeii (LV88 2016) https://genome.ucsc.edu/h/GCA_000333855.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/333/855/GCA_000333855.2/genes/GCA_000333855.2_Endotrypanum_monterogeii-LV88-1.0.3.augustus.gtf.gz -Entamoeba moshkovskii Laredo GenBank GCA_002914575.1 yes 3460 1147 0 Entamoeba moshkovskii Laredo AmoebaDB 41668 GCA_002914575.1_ASM291457v1 GCA_002914575.1 False Entamoeba moshkovskii E.moshkovskii (Laredo 2018) https://genome.ucsc.edu/h/GCA_002914575.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/914/575/GCA_002914575.1/genes/GCA_002914575.1_ASM291457v1.augustus.gtf.gz -Eimeria necatrix Houghton GenBank GCA_000499385.1 yes 0 3707 0 Eimeria necatrix Houghton ToxoDB 51315 GCF_000499385.1_ENH001 GCA_000499385.1 GCF_000499385.1 True Eimeria necatrix apicomplexans E.necatrix (Houghton 2013) https://genome.ucsc.edu/h/GCF_000499385.1 -Exophiala oligosperma strain CBS 72588 GenBank GCA_000835515.1 yes 0 143 0 Exophiala oligosperma strain CBS 72588 FungiDB 215243 GCF_000835515.1_Exop_olig_CBS72588_V1 GCA_000835515.1 GCF_000835515.1 True Exophiala oligosperma ascomycetes E.oligosperma https://genome.ucsc.edu/h/GCF_000835515.1 -Emergomyces orientalis 5z489 INSDC GCA_002110485.1 yes 0 108 0 Emergomyces orientalis 5z489 FungiDB 1972497 GCA_002110485.1_ASM211048v1 GCA_002110485.1 False Emergomyces orientalis ascomycetes E.orientalis (5z489 2017) https://genome.ucsc.edu/h/GCA_002110485.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/110/485/GCA_002110485.1/genes/GCA_002110485.1_ASM211048v1.augustus.gtf.gz -Eimeria praecox Houghton GenBank GCA_000499445.1 yes 0 21348 0 Eimeria praecox Houghton ToxoDB 51316 GCA_000499445.1_EPH001 GCA_000499445.1 False Eimeria praecox apicomplexans E.praecox (Houghton 2013) https://genome.ucsc.edu/h/GCA_000499445.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/499/445/GCA_000499445.1/genes/GCA_000499445.1_EPH001.augustus.gtf.gz -Exophiala spinifera CBS 89968 INSDC GCA_000836115.1 yes 0 28 0 Exophiala spinifera CBS 89968 FungiDB 91928 GCF_000836115.1_Exop_spin_CBS89968_V1 GCA_000836115.1 GCF_000836115.1 True Exophiala spinifera ascomycetes E.spinifera https://genome.ucsc.edu/h/GCF_000836115.1 -Eimeria tenella Houghton 2021 INSDC GCA_905310635.1 yes 0 0 15 Eimeria tenella Houghton 2021 ToxoDB 5802 GCA_905310635.1_pEimTen1.1 GCA_905310635.1 False Eimeria tenella apicomplexans E.tenella (2021) https://genome.ucsc.edu/h/GCA_905310635.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/905/310/635/GCA_905310635.1/genes/GCA_905310635.1_pEimTen1.1.augustus.gtf.gz -Fusarium circinatum NRRL 25331 INSDC GCA_013396185.1 yes 0 1222 0 Fusarium circinatum NRRL 25331 FungiDB 48490 GCA_013396185.1_ASM1339618v1 GCA_013396185.1 False Fusarium circinatum ascomycetes F.circinatum (NRRL 25331 2020) https://genome.ucsc.edu/h/GCA_013396185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/396/185/GCA_013396185.1/genes/GCA_013396185.1_ASM1339618v1.augustus.gtf.gz -Fusarium graminearum DAOM 233423 INSDC GCA_000966635.1 no 0 869 0 Fusarium graminearum DAOM 233423 FungiDB 5518 GCA_000966635.1_Fus_gra_233423_v1 GCA_000966635.1 False Fusarium graminearum ascomycetes F.graminearum (233423 2015) https://genome.ucsc.edu/h/GCA_000966635.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/966/635/GCA_000966635.1/genes/GCA_000966635.1_Fus_gra_233423_v1.augustus.gtf.gz -Fusarium mangiferae MRC7560 INSDC GCA_900044065.1 yes 0 254 0 Fusarium mangiferae MRC7560 FungiDB 192010 GCF_900044065.1_Genome_assembly_version_1 GCA_900044065.1 GCF_900044065.1 True Fusarium mangiferae ascomycetes F.mangiferae MRC7560 https://genome.ucsc.edu/h/GCF_900044065.1 -Fusarium odoratissimum strain race 4 GenBank GCA_000350365.1 yes 0 840 0 Fusarium odoratissimum strain race 4 FungiDB 2502994 GCA_000350365.1_Foc4_1.0 GCA_000350365.1 False Fusarium odoratissimum ascomycetes F.odoratissimum (race 4 2013) https://genome.ucsc.edu/h/GCA_000350365.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/350/365/GCA_000350365.1/genes/GCA_000350365.1_Foc4_1.0.augustus.gtf.gz -Fusarium proliferatum strain NRRL62905 GenBank GCA_900029915.1 no 155 0 0 Fusarium proliferatum strain NRRL62905 FungiDB 948311 GCA_900029915.1_F._proliferatum_NRRL62905_version_1 GCA_900029915.1 False Fusarium proliferatum ascomycetes F.proliferatum (NRRL62905 2016) https://genome.ucsc.edu/h/GCA_900029915.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/029/915/GCA_900029915.1/genes/GCA_900029915.1_F._proliferatum_NRRL62905_version_1.augustus.gtf.gz -Fusarium solani FSSC 5 MPI-SDFR-AT-0091 INSDC GCF_020744495.1 yes 0 74 0 Fusarium solani FSSC 5 MPI-SDFR-AT-0091 FungiDB 169388 GCF_020744495.1_Fusso1 GCA_020744495.1 GCF_020744495.1 True Fusarium solani ascomycetes F.solani https://genome.ucsc.edu/h/GCF_020744495.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/020/744/495/GCF_020744495.1/genes/GCF_020744495.1_Fusso1.ncbiRefSeq.gtf.gz -Giardia Assemblage A2 isolate DH GenBank GCA_000498715.1 no 239 0 0 Giardia Assemblage A 2 isolate DH GiardiaDB 5741 GCA_000498715.1_ASM49871v1 GCA_000498715.1 False Giardia intestinalis diplomonads (DH 2013) https://genome.ucsc.edu/h/GCA_000498715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/498/715/GCA_000498715.1/genes/GCA_000498715.1_ASM49871v1.augustus.gtf.gz -Giardia assemblage A isolate AS175 GenBank GCA_001493575.1 no 1139 0 0 Giardia Assemblage A AS175 GiardiaDB 941442 GCA_001493575.1_GIAS175 GCA_001493575.1 False Giardia intestinalis assemblage A diplomonads (AS175 2013) https://genome.ucsc.edu/h/GCA_001493575.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/493/575/GCA_001493575.1/genes/GCA_001493575.1_GIAS175.augustus.gtf.gz -Giardia Assemblage A isolate CIA INSDC GCA_022985015.1 no 0 93 0 Giardia Assemblage A isolate CIA GiardiaDB 5741 GCA_022985015.1_USDA_CIA_1 GCA_022985015.1 False Giardia intestinalis diplomonads (CIA 2022) https://genome.ucsc.edu/h/GCA_022985015.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/022/985/015/GCA_022985015.1/genes/GCA_022985015.1_USDA_CIA_1.augustus.gtf.gz -Giardia Assemblage A isolate WB 2019 INSDC GCA_000002435.2 yes 0 30 5 Giardia Assemblage A isolate WB 2019 GiardiaDB 5741 GCF_000002435.2_UU_WB_2.1 GCA_000002435.2 GCF_000002435.2 True Giardia intestinalis diplomonads (WB C6 2019) https://genome.ucsc.edu/h/GCF_000002435.2 -Giardia Assemblage A isolate WB Calgary INSDC GCA_011634545.1 no 0 37 0 Giardia Assemblage A isolate WB Calgary GiardiaDB 5741 GCA_011634545.1_ASM1163454v1 GCA_011634545.1 False Giardia intestinalis diplomonads (WB 2020) https://genome.ucsc.edu/h/GCA_011634545.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/011/634/545/GCA_011634545.1/genes/GCA_011634545.1_ASM1163454v1.augustus.gtf.gz -Giardia Assemblage B isolate BAH15c1 GenBank GCA_001543975.1 no 0 508 0 Giardia Assemblage B isolate BAH15c1 GiardiaDB 1394984 GCA_001543975.1_G_duodenalis_AssB_BAH15c1 GCA_001543975.1 False Giardia intestinalis assemblage B diplomonads (BAH15c1 2016) https://genome.ucsc.edu/h/GCA_001543975.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/543/975/GCA_001543975.1/genes/GCA_001543975.1_G_duodenalis_AssB_BAH15c1.augustus.gtf.gz -Giardia Assemblage B isolate GS Calgary INSDC GCA_011634595.1 no 0 19 0 Giardia Assemblage B isolate GS Calgary GiardiaDB 5741 GCA_011634595.1_ASM1163459v1 GCA_011634595.1 False Giardia intestinalis diplomonads (GS 2020) https://genome.ucsc.edu/h/GCA_011634595.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/011/634/595/GCA_011634595.1/genes/GCA_011634595.1_ASM1163459v1.augustus.gtf.gz -Giardia Assemblage B isolate GS_B GenBank GCA_000498735.1 no 543 0 0 Giardia Assemblage B isolate GS_B GiardiaDB 5741 GCA_000498735.1_ASM49873v1 GCA_000498735.1 False Giardia intestinalis diplomonads (GS 2013) https://genome.ucsc.edu/h/GCA_000498735.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/498/735/GCA_000498735.1/genes/GCA_000498735.1_ASM49873v1.augustus.gtf.gz -Giardia Assemblage D isolate DID INSDC GCA_022985025.1 no 0 260 0 Giardia Assemblage D isolate DID GiardiaDB 5741 GCA_022985025.1_USDA_DID_1 GCA_022985025.1 False Giardia intestinalis diplomonads (DID 2022) https://genome.ucsc.edu/h/GCA_022985025.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/022/985/025/GCA_022985025.1/genes/GCA_022985025.1_USDA_DID_1.augustus.gtf.gz -Glossina austeni TTRI INSDC GCA_000688735.1 yes 0 2205 0 Glossina austeni TTRI VectorBase 7395 GCA_000688735.1_Glossina_austeni-1.0.3 GCA_000688735.1 False Glossina austeni tsetse fly G.austeni (2014) https://genome.ucsc.edu/h/GCA_000688735.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/688/735/GCA_000688735.1/genes/GCA_000688735.1_Glossina_austeni-1.0.3.augustus.gtf.gz -Glossina brevipalpis IAEA INSDC GCA_000671755.1 yes 0 1651 0 Glossina brevipalpis IAEA VectorBase 37001 GCA_000671755.1_Glossina_brevipalpis_1.0.3 GCA_000671755.1 False Glossina brevipalpis tsetse fly G.brevipalpis (2014) https://genome.ucsc.edu/h/GCA_000671755.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/671/755/GCA_000671755.1/genes/GCA_000671755.1_Glossina_brevipalpis_1.0.3.augustus.gtf.gz -Glossina fuscipes IAEA INSDC GCA_000671735.1 no 0 2395 0 Glossina fuscipes IAEA VectorBase 201502 GCA_000671735.1_Glossina_fuscipes-3.0.2 GCA_000671735.1 False Glossina fuscipes fuscipes tsetse fly G.fuscipes fuscipes (2014) https://genome.ucsc.edu/h/GCA_000671735.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/671/735/GCA_000671735.1/genes/GCA_000671735.1_Glossina_fuscipes-3.0.2.augustus.gtf.gz -Glossina fuscipes IAEA 2018 INSDC GCA_014805625.1 yes 0 7986 0 Glossina fuscipes IAEA 2018 VectorBase 7396 GCF_014805625.2_Yale_Gfus_2 GCA_014805625.1 GCF_014805625.2 False Glossina fuscipes tsetse fly (v2 IAEA_lab_2018 2020) https://genome.ucsc.edu/h/GCF_014805625.2 -Gallus gallus isolate bGalGal1 INSDC GCF_016699485.2 yes 0 172 41 Gallus gallus isolate bGalGal1 HostDB 9031 GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b GCA_016699485.1 GCF_016699485.2 True Gallus gallus chicken white leghorn layer X broiler (broiler haplotype 2021 v2 2021) https://genome.ucsc.edu/h/GCF_016699485.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/016/699/485/GCF_016699485.2/genes/GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b.ncbiRefSeq.gtf.gz -Giardia intestinalis Beaver INSDC GCA_011634555.1 no 0 8 0 Giardia Assemblage A Beaver GiardiaDB 5741 GCA_011634555.1_ASM1163455v1 GCA_011634555.1 False Giardia intestinalis diplomonads (beaver 2020) https://genome.ucsc.edu/h/GCA_011634555.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/011/634/555/GCA_011634555.1/genes/GCA_011634555.1_ASM1163455v1.augustus.gtf.gz -Glossina morsitans Yale INSDC GCA_001077435.1 yes 0 13807 0 Glossina morsitans Yale VectorBase 37546 GCA_001077435.1_ASM107743v1 GCA_001077435.1 False Glossina morsitans morsitans tsetse fly G.morsitans morsitans (Yale 2014) https://genome.ucsc.edu/h/GCA_001077435.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/077/435/GCA_001077435.1/genes/GCA_001077435.1_ASM107743v1.augustus.gtf.gz -Giardia muris strain Roberts-Thomson GenBank GCA_006247105.1 yes 54 0 5 Giardia muris strain Roberts-Thomson GiardiaDB 5742 GCA_006247105.1_UU_GM_1.1 GCA_006247105.1 False Giardia muris diplomonads (Roberts-Thomson 2019) https://genome.ucsc.edu/h/GCA_006247105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/006/247/105/GCA_006247105.1/genes/GCA_006247105.1_UU_GM_1.1.augustus.gtf.gz -Gregarina niphandrodes Unknown strain GenBank GCA_000223845.4 yes 0 469 0 Gregarina niphandrodes Unknown strain CryptoDB 110365 GCF_000223845.1_GNI3 GCA_000223845.4 GCF_000223845.1 True Gregarina niphandrodes apicomplexans G.niphandrodes (2014) https://genome.ucsc.edu/h/GCF_000223845.1 -Glossina pallidipes IAEA INSDC GCA_000688715.1 yes 0 1726 0 Glossina pallidipes IAEA VectorBase 7398 GCA_000688715.1_Glossina_pallidipes-1.0.3 GCA_000688715.1 False Glossina pallidipes tsetse fly G.pallidipes (2014) https://genome.ucsc.edu/h/GCA_000688715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/688/715/GCA_000688715.1/genes/GCA_000688715.1_Glossina_pallidipes-1.0.3.augustus.gtf.gz -Glossina palpalis IAEA INSDC GCA_000818775.1 yes 0 3926 0 Glossina palpalis IAEA VectorBase 67801 GCA_000818775.1_Glossina_palpalis_gambiensis-2.0.1 GCA_000818775.1 False Glossina palpalis gambiensis tsetse fly G.palpalis gambiensis (146720 2015) https://genome.ucsc.edu/h/GCA_000818775.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/818/775/GCA_000818775.1/genes/GCA_000818775.1_Glossina_palpalis_gambiensis-2.0.1.augustus.gtf.gz -Hyalomma asiaticum Hyas-2018 INSDC GCA_013339685.2 yes 0 6308 11 Hyalomma asiaticum Hyas-2018 VectorBase 266040 GCA_013339685.2_BIME_Hyas_1.3 GCA_013339685.2 False Hyalomma asiaticum mite/tick H.asiaticum (Hyas-2018 2020) https://genome.ucsc.edu/h/GCA_013339685.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/339/685/GCA_013339685.2/genes/GCA_013339685.2_BIME_Hyas_1.3.augustus.gtf.gz -Histoplasma capsulatum G184AR INSDC GCA_017607465.1 no 0 11 0 Histoplasma capsulatum G184AR FungiDB 5037 GCA_017607465.1_ASM1760746v1 GCA_017607465.1 False Histoplasma capsulatum ascomycetes H.capsulatum (G184AR 2021) https://genome.ucsc.edu/h/GCA_017607465.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/607/465/GCA_017607465.1/genes/GCA_017607465.1_ASM1760746v1.augustus.gtf.gz -Histoplasma capsulatum WU24 INSDC GCA_017310585.1 no 0 0 7 Histoplasma capsulatum WU24 FungiDB 5037 GCA_017310585.1_ASM1731058v1 GCA_017310585.1 False Histoplasma capsulatum ascomycetes H.capsulatum (WU24 2021) https://genome.ucsc.edu/h/GCA_017310585.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/310/585/GCA_017310585.1/genes/GCA_017310585.1_ASM1731058v1.augustus.gtf.gz -Hepatospora eriocheir strain GB1 GenBank GCA_002087885.1 yes 1300 0 0 Hepatospora eriocheir strain GB1 MicrosporidiaDB 1081669 GCA_002087885.1_ASM208788v1 GCA_002087885.1 False Hepatospora eriocheir microsporidians H.eriocheir (GB1 2017) https://genome.ucsc.edu/h/GCA_002087885.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/087/885/GCA_002087885.1/genes/GCA_002087885.1_ASM208788v1.augustus.gtf.gz -Hepatospora eriocheir strain canceri GenBank GCA_002087875.1 no 2344 0 0 Hepatospora eriocheir strain canceri MicrosporidiaDB 1081669 GCA_002087875.1_ASM208787v1 GCA_002087875.1 False Hepatospora eriocheir microsporidians H.eriocheir (canceri 2017) https://genome.ucsc.edu/h/GCA_002087875.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/087/875/GCA_002087875.1/genes/GCA_002087875.1_ASM208787v1.augustus.gtf.gz -Hanseniaspora guilliermondii strain UTAD222 INSDC GCA_900119595.1 yes 0 208 0 Hanseniaspora guilliermondii strain UTAD222 FungiDB 56406 GCA_900119595.1_version_1 GCA_900119595.1 False Hanseniaspora guilliermondii budding yeast H.guilliermondii (UTAD222 2016) https://genome.ucsc.edu/h/GCA_900119595.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/119/595/GCA_900119595.1/genes/GCA_900119595.1_version_1.augustus.gtf.gz -Hammondia hammondi strain H.H.34 GenBank GCA_000258005.2 yes 0 14860 0 Hammondia hammondi strain H.H.34 ToxoDB 99158 GCF_000258005.1_HHA1_v02 GCA_000258005.2 GCF_000258005.1 True Hammondia hammondi apicomplexans H.hammondi (H.H.34 2014) https://genome.ucsc.edu/h/GCF_000258005.1 -Haemaphysalis longicornis HaeL-2018 INSDC GCA_013339765.2 yes 0 3874 11 Haemaphysalis longicornis HaeL-2018 VectorBase 44386 GCA_013339765.2_BIME_HaeL_1.3 GCA_013339765.2 False Haemaphysalis longicornis longhorned tick (HaeL-2018 2020) https://genome.ucsc.edu/h/GCA_013339765.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/339/765/GCA_013339765.2/genes/GCA_013339765.2_BIME_HaeL_1.3.augustus.gtf.gz -Hamiltosporidium magnivora BE-OM-2 INSDC GCA_004325065.1 yes 0 3550 0 Hamiltosporidium magnivora BE-OM-2 MicrosporidiaDB 148818 GCA_004325065.1_BEOM2_v1 GCA_004325065.1 False Hamiltosporidium magnivora microsporidians H.magnivora (BE-OM-2 2019) https://genome.ucsc.edu/h/GCA_004325065.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/325/065/GCA_004325065.1/genes/GCA_004325065.1_BEOM2_v1.augustus.gtf.gz -Hamiltosporidium magnivora IL-BN-2 INSDC GCA_004325035.1 no 0 3833 0 Hamiltosporidium magnivora IL-BN-2 MicrosporidiaDB 148818 GCA_004325035.1_ASM432503v1 GCA_004325035.1 False Hamiltosporidium magnivora microsporidians H.magnivora (IL-BN-2 2019) https://genome.ucsc.edu/h/GCA_004325035.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/325/035/GCA_004325035.1/genes/GCA_004325035.1_ASM432503v1.augustus.gtf.gz -Histomonas meleagridis 2922-C6/04-10x INSDC GCA_020186115.1 yes 0 187 0 Histomonas meleagridis 2922-C6/04-10x TrichDB 135588 GCA_020186115.1_ASM2018611v1 GCA_020186115.1 GCF_020186115.1 True Histomonas meleagridis H.meleagridis (2922-C6/04-10x 2021) https://genome.ucsc.edu/h/GCA_020186115.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/186/115/GCA_020186115.1/genes/GCA_020186115.1_ASM2018611v1.augustus.gtf.gz -Histomonas meleagridis 2922-C6/04-290x INSDC GCA_020184695.1 no 0 281 0 Histomonas meleagridis 2922-C6/04-290x TrichDB 135588 GCA_020184695.1_ASM2018469v1 GCA_020184695.1 False Histomonas meleagridis H.meleagridis (2922-C6/04-290x 2021) https://genome.ucsc.edu/h/GCA_020184695.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/184/695/GCA_020184695.1/genes/GCA_020184695.1_ASM2018469v1.augustus.gtf.gz -Hepatocystis sp. ex Piliocolobus tephrosceles 2019 INSDC GCA_902459845.2 yes 0 2439 0 Hepatocystis sp. ex Piliocolobus tephrosceles 2019 PlasmoDB 2600580 GCA_902459845.2_HEP1 GCA_902459845.2 False Hepatocystis sp. ex Piliocolobus tephrosceles apicomplexans H.sp. ex Piliocolobus tephrosceles (2020) https://genome.ucsc.edu/h/GCA_902459845.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/902/459/845/GCA_902459845.2/genes/GCA_902459845.2_HEP1.augustus.gtf.gz -Haemoproteus tartakovskyi strain SISKIN1 INSDC GCA_001625125.1 yes 0 2982 0 Haemoproteus tartakovskyi strain SISKIN1 PlasmoDB 707206 GCA_001625125.1_ASM162512v1 GCA_001625125.1 False Haemoproteus tartakovskyi apicomplexans H.tartakovskyi (SISKIN1 2016) https://genome.ucsc.edu/h/GCA_001625125.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/625/125/GCA_001625125.1/genes/GCA_001625125.1_ASM162512v1.augustus.gtf.gz -Hamiltosporidium tvaerminnensis FI-OER-3-3 INSDC GCA_004325045.1 yes 0 2915 0 Hamiltosporidium tvaerminnensis FI-OER-3-3 MicrosporidiaDB 1176355 GCA_004325045.1_FIOER33_v1 GCA_004325045.1 False Hamiltosporidium tvaerminnensis microsporidians H.tvaerminnensis (FI-OER-3-3 2019) https://genome.ucsc.edu/h/GCA_004325045.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/325/045/GCA_004325045.1/genes/GCA_004325045.1_FIOER33_v1.augustus.gtf.gz -Hamiltosporidium tvaerminnensis IL-G-3 INSDC GCA_004325075.1 no 0 2738 0 Hamiltosporidium tvaerminnensis IL-G-3 MicrosporidiaDB 1176355 GCA_004325075.1_ILG3_v1 GCA_004325075.1 False Hamiltosporidium tvaerminnensis microsporidians H.tvaerminnensis (IL-G-3 2019) https://genome.ucsc.edu/h/GCA_004325075.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/325/075/GCA_004325075.1/genes/GCA_004325075.1_ILG3_v1.augustus.gtf.gz -Hanseniaspora uvarum strain AWRI3580 INSDC GCA_001747055.1 yes 0 18 0 Hanseniaspora uvarum strain AWRI3580 FungiDB 29833 GCA_001747055.1_ASM174705v1 GCA_001747055.1 False Hanseniaspora uvarum budding yeast H.uvarum (AWRI3580 2016) https://genome.ucsc.edu/h/GCA_001747055.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/747/055/GCA_001747055.1/genes/GCA_001747055.1_ASM174705v1.augustus.gtf.gz -Hemileia vastatrix Race XXXIII INSDC GCA_004125335.1 yes 0 116756 0 Hemileia vastatrix Race XXXIII FungiDB 203904 GCA_004125335.1_ASM412533v1 GCA_004125335.1 False Hemileia vastatrix coffee rust fungus (Race XXXIII 2019) https://genome.ucsc.edu/h/GCA_004125335.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/125/335/GCA_004125335.1/genes/GCA_004125335.1_ASM412533v1.augustus.gtf.gz -Ixodes persulcatus Iper-2018 INSDC GCA_013358835.2 yes 0 11596 0 Ixodes persulcatus Iper-2018 VectorBase 34615 GCA_013358835.2_BIME_Iper_1.3 GCA_013358835.2 False Ixodes persulcatus taiga tick (Iper-2018 2020) https://genome.ucsc.edu/h/GCA_013358835.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/358/835/GCA_013358835.2/genes/GCA_013358835.2_BIME_Iper_1.3.augustus.gtf.gz -Ixodes ricinus Charles River INSDC GCA_000973045.2 yes 0 204516 0 Ixodes ricinus Charles River VectorBase 34613 GCA_000973045.2_ASM97304v2 GCA_000973045.2 False Ixodes ricinus castor bean tick (Charles River 2016) https://genome.ucsc.edu/h/GCA_000973045.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/973/045/GCA_000973045.2/genes/GCA_000973045.2_ASM97304v2.augustus.gtf.gz -Ixodes scapularis ISE6 INSDC GCA_002892825.2 no 0 6476 0 Ixodes scapularis ISE6 VectorBase 6945 GCF_002892825.2_ISE6_asm2.2_deduplicated GCA_002892825.2 GCF_002892825.2 False Ixodes scapularis black-legged tick (JCVI 2018) https://genome.ucsc.edu/h/GCF_002892825.2 -Ixodes scapularis PalLabHiFi INSDC GCF_016920785.2 yes 0 648 0 Ixodes scapularis PalLabHiFi VectorBase 6945 GCF_016920785.2_ASM1692078v2 GCA_016920785.2 GCF_016920785.2 True Ixodes scapularis black-legged tick (U.Maryland v2 2021) https://genome.ucsc.edu/h/GCF_016920785.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/016/920/785/GCF_016920785.2/genes/GCF_016920785.2_ASM1692078v2.ncbiRefSeq.gtf.gz -Ixodes scapularis Wikel INSDC GCA_000208615.1 no 0 369492 0 Ixodes scapularis Wikel VectorBase 6945 GCF_000208615.1_JCVI_ISG_i3_1.0 GCA_000208615.1 GCF_000208615.1 True Ixodes scapularis black-legged tick (Wikel colony 2008) https://genome.ucsc.edu/h/GCF_000208615.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/208/615/GCA_000208615.1/genes/GCA_000208615.1_JCVI_ISG_i3_1.0.augustus.gtf.gz -Leishmania amazonensis MHOM/BR/71973/M2269 GenBank GCA_000438535.1 yes 0 2627 0 Leishmania amazonensis MHOM/BR/71973/M2269 TriTrypDB 5659 GCA_000438535.1_LeiAma1.0 GCA_000438535.1 False Leishmania amazonensis Leishmania amazonensis (2013) https://genome.ucsc.edu/h/GCA_000438535.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/438/535/GCA_000438535.1/genes/GCA_000438535.1_LeiAma1.0.augustus.gtf.gz -Leishmania amazonensis strain PH8 INSDC GCA_025688915.1 no 0 42 34 Leishmania amazonensis strain PH8 TriTrypDB 5659 GCA_025688915.1_ASM2568891v1 GCA_025688915.1 False Leishmania amazonensis Leishmania amazonensis (PH8 2022) https://genome.ucsc.edu/h/GCA_025688915.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/025/688/915/GCA_025688915.1/genes/GCA_025688915.1_ASM2568891v1.augustus.gtf.gz -Leishmania arabica strain LEM1108 GenBank GCA_000410695.2 yes 0 132 36 Leishmania arabica strain LEM1108 TriTrypDB 40284 GCA_000410695.2_Leishmania_arabica_LEM1108-1.0.3 GCA_000410695.2 False Leishmania arabica Leishmania arabica (LEM1108 2016) https://genome.ucsc.edu/h/GCA_000410695.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/410/695/GCA_000410695.2/genes/GCA_000410695.2_Leishmania_arabica_LEM1108-1.0.3.augustus.gtf.gz -Leishmania donovani strain BHU 1220 GenBank GCA_000470725.1 no 0 0 36 Leishmania donovani strain BHU 1220 TriTrypDB 5661 GCA_000470725.1_BHU1220 GCA_000470725.1 False Leishmania donovani Leishmania donovani (BHU 1220 2013) https://genome.ucsc.edu/h/GCA_000470725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/470/725/GCA_000470725.1/genes/GCA_000470725.1_BHU1220.augustus.gtf.gz -Leishmania donovani CL-SL GenBank GCA_003719575.1 no 0 0 36 Leishmania donovani CL-SL TriTrypDB 5661 GCA_003719575.1_ASM371957v1 GCA_003719575.1 False Leishmania donovani Leishmania donovani (LdCL 2018) https://genome.ucsc.edu/h/GCA_003719575.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/719/575/GCA_003719575.1/genes/GCA_003719575.1_ASM371957v1.augustus.gtf.gz -Leishmania donovani HU3 INSDC GCA_900635355.2 no 0 0 36 Leishmania donovani HU3 TriTrypDB 5661 GCA_900635355.2_LDHU3_new GCA_900635355.2 False Leishmania donovani Leishmania donovani (2020) https://genome.ucsc.edu/h/GCA_900635355.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/635/355/GCA_900635355.2/genes/GCA_900635355.2_LDHU3_new.augustus.gtf.gz -Leishmania enriettii strain LEM3045 GenBank GCA_000410755.2 yes 0 459 36 Leishmania enriettii strain LEM3045 TriTrypDB 5663 GCA_000410755.2_Leishmania_enrietti_LEM3045-1.0.2 GCA_000410755.2 False Leishmania enriettii Leishmania enriettii (LEM3045 2016) https://genome.ucsc.edu/h/GCA_000410755.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/410/755/GCA_000410755.2/genes/GCA_000410755.2_Leishmania_enrietti_LEM3045-1.0.2.augustus.gtf.gz -Leishmania enriettii MCAV/BR/2001/CUR178 INSDC GCA_017916305.1 no 0 18 36 Leishmania enriettii MCAV/BR/2001/CUR178 TriTrypDB 5663 GCA_017916305.1_LU_Lenr_1.0 GCA_017916305.1 GCF_017916305.1 True Leishmania enriettii Leishmania enriettii (CUR178 2021) https://genome.ucsc.edu/h/GCA_017916305.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/916/305/GCA_017916305.1/genes/GCA_017916305.1_LU_Lenr_1.0.augustus.gtf.gz -Leishmania gerbilli strain LEM452 GenBank GCA_000443025.1 yes 0 106 36 Leishmania gerbilli strain LEM452 TriTrypDB 40285 GCA_000443025.1_Leishmania_gerbilii_LEM452-1.0.2 GCA_000443025.1 False Leishmania gerbilli Leishmania gerbilli (LEM452 2013) https://genome.ucsc.edu/h/GCA_000443025.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/443/025/GCA_000443025.1/genes/GCA_000443025.1_Leishmania_gerbilii_LEM452-1.0.2.augustus.gtf.gz -Lutzomyia longipalpis Jacobina INSDC GCA_000265325.1 no 0 11532 0 Lutzomyia longipalpis Jacobina VectorBase 7200 GCA_000265325.1_Llon_1.0 GCA_000265325.1 False Lutzomyia longipalpis fly L.longipalpis (2012) https://genome.ucsc.edu/h/GCA_000265325.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/265/325/GCA_000265325.1/genes/GCA_000265325.1_Llon_1.0.augustus.gtf.gz -Lutzomyia longipalpis M1 INSDC GCF_024334085.1 yes 0 0 4 Lutzomyia longipalpis M1 VectorBase 7200 GCF_024334085.1_ASM2433408v1 GCA_024334085.1 GCF_024334085.1 True Lutzomyia longipalpis fly L.longipalpis (SR_M1_2022 2022) https://genome.ucsc.edu/h/GCF_024334085.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/024/334/085/GCF_024334085.1/genes/GCF_024334085.1_ASM2433408v1.ncbiRefSeq.gtf.gz -Leishmania major Friedlin 2021 INSDC GCA_916722125.1 no 0 0 36 Leishmania major Friedlin 2021 TriTrypDB 347515 GCA_916722125.1_LMJFC_annotationDEFINITIVO GCA_916722125.1 False Leishmania major strain Friedlin Leishmania major strain (Friedlin 2021) https://genome.ucsc.edu/h/GCA_916722125.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/916/722/125/GCA_916722125.1/genes/GCA_916722125.1_LMJFC_annotationDEFINITIVO.augustus.gtf.gz -Leishmania martiniquensis LEM2494 GenBank GCA_000409445.2 yes 0 215 36 Leishmania martiniquensis LEM2494 TriTrypDB 1303197 GCA_000409445.2_Leishmania_MAR_LEM2494-1.0.3 GCA_000409445.2 False Leishmania sp. MAR LEM2494 Leishmania sp. MAR (LEM2494 2016) https://genome.ucsc.edu/h/GCA_000409445.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/409/445/GCA_000409445.2/genes/GCA_000409445.2_Leishmania_MAR_LEM2494-1.0.3.augustus.gtf.gz -Leishmania martiniquensis MHOM/TH/2012/LSCM1 INSDC GCA_017916325.1 no 0 6 36 Leishmania martiniquensis MHOM/TH/2012/LSCM1 TriTrypDB 1580590 GCF_017916325.1_LU_Lmar_1.0 GCA_017916325.1 GCF_017916325.1 True Leishmania martiniquensis Leishmania martiniquensis (LSCM1 2021 refseq) https://genome.ucsc.edu/h/GCF_017916325.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/916/325/GCA_017916325.1/genes/GCA_017916325.1_LU_Lmar_1.0.augustus.gtf.gz -Leishmania orientalis MHOM/TH/2014/LSCM4 INSDC GCA_017916335.1 yes 0 62 36 Leishmania orientalis MHOM/TH/2014/LSCM4 TriTrypDB 2249476 GCF_017916335.1_LU_Lori_1.0 GCA_017916335.1 GCF_017916335.1 True Leishmania orientalis Leishmania orientalis (LSCM4 2021) https://genome.ucsc.edu/h/GCF_017916335.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/916/335/GCA_017916335.1/genes/GCA_017916335.1_LU_Lori_1.0.augustus.gtf.gz -Leishmania panamensis strain MHOM/PA/94/PSC-1 GenBank GCA_000755165.1 no 0 0 35 Leishmania panamensis strain MHOM/PA/94/PSC-1 TriTrypDB 5679 GCF_000755165.1_ASM75516v1 GCA_000755165.1 GCF_000755165.1 True Leishmania panamensis Leishmania panamensis (MHOM/PA/94/PSC-1 2014 kinetoplastids) https://genome.ucsc.edu/h/GCF_000755165.1 -Lomentospora prolificans JHH-5317 GenBank GCA_002276285.1 yes 1624 0 0 Lomentospora prolificans JHH-5317 FungiDB 41688 GCA_002276285.1_Lprolificans_pilon GCA_002276285.1 False Lomentospora prolificans ascomycetes L.prolificans (JHH-5317 2017) https://genome.ucsc.edu/h/GCA_002276285.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/276/285/GCA_002276285.1/genes/GCA_002276285.1_Lprolificans_pilon.augustus.gtf.gz -Leptomonas pyrrhocoris H10 GenBank GCA_001293395.1 yes 0 25 35 Leptomonas pyrrhocoris H10 TriTrypDB 157538 GCF_001293395.1_ASM129339v1 GCA_001293395.1 GCF_001293395.1 True Leptomonas pyrrhocoris Leptomonas pyrrhocoris (H10 2015 kinetoplastids) https://genome.ucsc.edu/h/GCF_001293395.1 -Lichtheimia ramosa KPH11 INSDC GCA_008728235.1 yes 0 0 10 Lichtheimia ramosa KPH11 FungiDB 688394 GCA_008728235.1_ASM872823v1 GCA_008728235.1 False Lichtheimia ramosa fungi L.ramosa (KPH11 2019) https://genome.ucsc.edu/h/GCA_008728235.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/008/728/235/GCA_008728235.1/genes/GCA_008728235.1_ASM872823v1.augustus.gtf.gz -Leptomonas seymouri ATCC 30220 GenBank GCA_001299535.1 yes 1222 0 0 Leptomonas seymouri ATCC 30220 TriTrypDB 5684 GCA_001299535.1_ASM129953v1 GCA_001299535.1 False Leptomonas seymouri Leptomonas seymouri (ATCC 30220 2015) https://genome.ucsc.edu/h/GCA_001299535.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/299/535/GCA_001299535.1/genes/GCA_001299535.1_ASM129953v1.augustus.gtf.gz -Leishmania sp. Ghana MHOM/GH/2012/GH5 INSDC GCA_017918215.1 yes 0 80 36 Leishmania sp. Ghana MHOM/GH/2012/GH5 TriTrypDB 2803181 GCA_017918215.1_LU_Lgha_1.0 GCA_017918215.1 GCF_017918215.1 True Leishmania sp. Ghana 2012 LV757 Leishmania sp. Ghana 2012 LV757 (GH5 2021) https://genome.ucsc.edu/h/GCA_017918215.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/918/215/GCA_017918215.1/genes/GCA_017918215.1_LU_Lgha_1.0.augustus.gtf.gz -Leishmania sp. Namibia MPRO/NA/1975/252/LV425 INSDC GCA_017918225.1 yes 0 31 36 Leishmania sp. Namibia MPRO/NA/1975/252/LV425 TriTrypDB 2802991 GCA_017918225.1_LU_LNam_1.0 GCA_017918225.1 GCF_017918225.1 True Leishmania sp. Namibia Leishmania sp. Namibia (253 2021) https://genome.ucsc.edu/h/GCA_017918225.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/918/225/GCA_017918225.1/genes/GCA_017918225.1_LU_LNam_1.0.augustus.gtf.gz -Leishmania tarentolae Parrot Tar II 2019 INSDC GCA_009731335.1 no 0 179 0 Leishmania tarentolae Parrot Tar II 2019 TriTrypDB 5689 GCA_009731335.1_Lta_assembly01 GCA_009731335.1 False Leishmania tarentolae Leishmania tarentolae (Parrot Tar II 2019) https://genome.ucsc.edu/h/GCA_009731335.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/731/335/GCA_009731335.1/genes/GCA_009731335.1_Lta_assembly01.augustus.gtf.gz -Leishmania turanica strain LEM423 GenBank GCA_000441995.1 yes 0 183 36 Leishmania turanica strain LEM423 TriTrypDB 62297 GCA_000441995.1_Leishmania_turanica_LEM423-1.0.2 GCA_000441995.1 False Leishmania turanica Leishmania turanica (LEM423 2013) https://genome.ucsc.edu/h/GCA_000441995.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/441/995/GCA_000441995.1/genes/GCA_000441995.1_Leishmania_turanica_LEM423-1.0.2.augustus.gtf.gz -Mitosporidium daphniae UGP3 GenBank GCA_000760515.2 yes 0 610 0 Mitosporidium daphniae UGP3 MicrosporidiaDB 1485682 GCF_000760515.2_UGP1.1 GCA_000760515.2 GCF_000760515.2 True Mitosporidium daphniae microsporidians M.daphniae https://genome.ucsc.edu/h/GCF_000760515.2 -Musca domestica aabys INSDC GCA_000371365.1 yes 0 20487 0 Musca domestica aabys VectorBase 7370 GCF_000371365.1_Musca_domestica-2.0.2 GCA_000371365.1 GCF_000371365.1 True Musca domestica house fly (aabys 2013 refseq) https://genome.ucsc.edu/h/GCF_000371365.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/371/365/GCA_000371365.1/genes/GCA_000371365.1_Musca_domestica-2.0.2.augustus.gtf.gz -Musca domestica aabys 2023 INSDC GCF_030504385.1 no 0 339 0 Musca domestica aabys 2023 VectorBase 7370 GCF_030504385.1_Musca_domestica.polishedcontigs.V.1.1 GCA_030504385.2 GCF_030504385.1 False Musca domestica house fly (aabys 2023) https://genome.ucsc.edu/h/GCF_030504385.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/030/504/385/GCF_030504385.1/genes/GCF_030504385.1_Musca_domestica.polishedcontigs.V.1.1.ncbiRefSeq.gtf.gz -Monocercomonoides exilis PA203 GenBank GCA_001643675.2 yes 0 101 0 Monocercomonoides exilis PA203 GiardiaDB 2049356 GCA_001643675.2_ASM164367v2 GCA_001643675.2 GCF_001643675.1 True Monocercomonoides exilis M.exilis (PA203 2021) https://genome.ucsc.edu/h/GCA_001643675.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/643/675/GCA_001643675.2/genes/GCA_001643675.2_ASM164367v2.augustus.gtf.gz -Macaca fascicularis REF INSDC GCF_000364345.1 yes 0 7579 21 Macaca fascicularis REF HostDB 9541 GCF_000364345.1_Macaca_fascicularis_5.0 GCA_000364345.1 GCF_000364345.1 False Macaca fascicularis crab-eating macaque WashU 2013 refseq https://genome.ucsc.edu/h/GCF_000364345.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/000/364/345/GCF_000364345.1/genes/GCF_000364345.1_Macaca_fascicularis_5.0.ncbiRefSeq.gtf.gz -Monilinia fructicola CPMC6 INSDC GCA_016906325.1 yes 0 99 0 Monilinia fructicola CPMC6 FungiDB 38448 GCA_016906325.1_ASM1690632v1 GCA_016906325.1 False Monilinia fructicola ascomycetes M.fructicola (CPMC6 2021) https://genome.ucsc.edu/h/GCA_016906325.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/016/906/325/GCA_016906325.1/genes/GCA_016906325.1_ASM1690632v1.augustus.gtf.gz -Macaca mulatta isolate AG07107 INSDC GCA_003339765.3 yes 0 2916 22 Macaca mulatta isolate AG07107 HostDB 9544 GCF_003339765.1_Mmul_10 GCA_003339765.3 GCF_003339765.1 False Macaca mulatta Rhesus monkey (2019 U. Washington) https://genome.ucsc.edu/h/GCF_003339765.1 -Madurella mycetomatis mm55 INSDC GCA_001275765.2 yes 0 804 0 Madurella mycetomatis mm55 FungiDB 100816 GCA_001275765.2_ASM127576v2 GCA_001275765.2 False Madurella mycetomatis ascomycetes M.mycetomatis (mm55 2016) https://genome.ucsc.edu/h/GCA_001275765.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/275/765/GCA_001275765.2/genes/GCA_001275765.2_ASM127576v2.augustus.gtf.gz -Myotis myotis mMyoMyo1 INSDC GCF_014108235.1 yes 0 92 0 Myotis myotis mMyoMyo1 HostDB 51298 GCF_014108235.1_mMyoMyo1.p GCA_014108235.1 GCF_014108235.1 False Myotis myotis greater mouse-eared bat (2020 Bat1K) https://genome.ucsc.edu/h/GCF_014108235.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/014/108/235/GCF_014108235.1/genes/GCF_014108235.1_mMyoMyo1.p.ncbiRefSeq.gtf.gz -Malassezia pachydermatis CBS 1879 INSDC GCA_001278385.1 yes 0 91 0 Malassezia pachydermatis CBS 1879 FungiDB 77020 GCF_001278385.1_MalaPachy GCA_001278385.1 GCF_001278385.1 True Malassezia pachydermatis basidiomycetes M.pachydermatis https://genome.ucsc.edu/h/GCF_001278385.1 -Malassezia restricta KCTC 27527 GenBank GCA_003290485.1 yes 0 0 9 Malassezia restricta KCTC 27527 FungiDB 76775 GCF_003290485.1_ASM329048v1 GCA_003290485.1 GCF_003290485.1 True Malassezia restricta basidiomycetes M.restricta https://genome.ucsc.edu/h/GCF_003290485.1 -Naganishia albida JCM2334 GenBank GCA_001599735.1 no 74 0 0 Naganishia albida JCM2334 FungiDB 100951 GCA_001599735.1_JCM_2334_assembly_v001 GCA_001599735.1 False Naganishia albida basidiomycetes N.albida (JCM 2334 2016) https://genome.ucsc.edu/h/GCA_001599735.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/599/735/GCA_001599735.1/genes/GCA_001599735.1_JCM_2334_assembly_v001.augustus.gtf.gz -Naganishia albida NRRL Y-1402 GenBank GCA_001444555.1 yes 834 0 0 Naganishia albida NRRL Y-1402 FungiDB 100951 GCA_001444555.1_ASM144455v1 GCA_001444555.1 False Naganishia albida basidiomycetes N.albida (NRRL Y-1402 2015) https://genome.ucsc.edu/h/GCA_001444555.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/444/555/GCA_001444555.1/genes/GCA_001444555.1_ASM144455v1.augustus.gtf.gz -Nematocida ausubeli ERTm2 GenBank GCA_000250695.1 yes 0 202 0 Nematocida ausubeli ERTm2 MicrosporidiaDB 1913371 GCA_000250695.1_Nema_parisii_ERTm2_V1 GCA_000250695.1 False Nematocida ausubeli microsporidians N.ausubeli (ERTm2 2012) https://genome.ucsc.edu/h/GCA_000250695.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/250/695/GCA_000250695.1/genes/GCA_000250695.1_Nema_parisii_ERTm2_V1.augustus.gtf.gz -Nematocida ausubeli ERTm6 GenBank GCA_000738915.1 no 0 22 0 Nematocida ausubeli ERTm6 MicrosporidiaDB 1913371 GCF_000738915.1_Nema_sp_1_ERTm6_V2 GCA_000738915.1 GCF_000738915.1 True Nematocida ausubeli microsporidians N.ausubeli (ERTm6 2014) https://genome.ucsc.edu/h/GCF_000738915.1 -Neospora caninum Liverpool 2019 INSDC GCA_016097395.1 no 31 0 13 Neospora caninum Liverpool 2019 ToxoDB 29176 GCA_016097395.1_Ncaninum_LIV GCA_016097395.1 False Neospora caninum apicomplexans N.caninum (Liverpool 2020) https://genome.ucsc.edu/h/GCA_016097395.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/016/097/395/GCA_016097395.1/genes/GCA_016097395.1_Ncaninum_LIV.augustus.gtf.gz -Nosema ceranae BRL INSDC GCA_004919615.1 no 0 110 0 Nosema ceranae BRL MicrosporidiaDB 40302 GCA_004919615.1_Ncer_3.0 GCA_004919615.1 False Vairimorpha ceranae microsporidians V.ceranae (BRL 2019) https://genome.ucsc.edu/h/GCA_004919615.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/919/615/GCA_004919615.1/genes/GCA_004919615.1_Ncer_3.0.augustus.gtf.gz -Nosema ceranae strain PA08_1199 GenBank GCA_000988165.1 no 536 0 0 Nosema ceranae strain PA08_1199 MicrosporidiaDB 40302 GCF_000988165.1_ASM98816v1 GCA_000988165.1 GCF_000988165.1 True Vairimorpha ceranae microsporidians N.ceranae https://genome.ucsc.edu/h/GCF_000988165.1 -Nematocida displodere strain JUm2807 GenBank GCA_001642395.1 yes 40 0 0 Nematocida displodere strain JUm2807 MicrosporidiaDB 1805483 GCA_001642395.1_ASM164239v1 GCA_001642395.1 GCF_001642395.1 True Nematocida displodere microsporidians N.displodere (JUm2807 2016) https://genome.ucsc.edu/h/GCA_001642395.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/642/395/GCA_001642395.1/genes/GCA_001642395.1_ASM164239v1.augustus.gtf.gz -Naegleria fowleri ATCC 30863 GenBank GCA_000499105.1 no 0 1124 0 Naegleria fowleri ATCC 30863 AmoebaDB 5763 GCA_000499105.1_Naegleria_fowleri_1.0 GCA_000499105.1 False Naegleria fowleri brain-eating amoeba (ATCC 30863 2013) https://genome.ucsc.edu/h/GCA_000499105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/499/105/GCA_000499105.1/genes/GCA_000499105.1_Naegleria_fowleri_1.0.augustus.gtf.gz -Naegleria fowleri strain ATCC 30894 INSDC GCA_008403515.1 no 0 81 0 Naegleria fowleri strain ATCC 30894 AmoebaDB 5763 GCF_008403515.1_ASM840351v1 GCA_008403515.1 GCF_008403515.1 False Naegleria fowleri brain-eating amoeba (ATCC 30894 2019) https://genome.ucsc.edu/h/GCF_008403515.1 -Naegleria fowleri strain Ty INSDC GCA_014843625.1 yes 0 0 37 Naegleria fowleri strain Ty AmoebaDB 5763 GCA_014843625.1_ASM1484362v1 GCA_014843625.1 False Naegleria fowleri brain-eating amoeba (Ty 2020) https://genome.ucsc.edu/h/GCA_014843625.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/843/625/GCA_014843625.1/genes/GCA_014843625.1_ASM1484362v1.augustus.gtf.gz -Nakaseomyces glabratus BG2 INSDC GCA_014217725.1 no 0 0 13 Nakaseomyces glabratus BG2 FungiDB 5478 GCA_014217725.1_ASM1421772v1 GCA_014217725.1 False Nakaseomyces glabratus budding yeast N.glabratus (BG2 2020) https://genome.ucsc.edu/h/GCA_014217725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/217/725/GCA_014217725.1/genes/GCA_014217725.1_ASM1421772v1.augustus.gtf.gz -Nakaseomyces glabratus BG3993 INSDC GCA_020450195.1 no 0 0 13 Nakaseomyces glabratus BG3993 FungiDB 5478 GCA_020450195.1_ASM2045019v1 GCA_020450195.1 False Nakaseomyces glabratus budding yeast N.glabratus (BG3993 2021) https://genome.ucsc.edu/h/GCA_020450195.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/450/195/GCA_020450195.1/genes/GCA_020450195.1_ASM2045019v1.augustus.gtf.gz -Nakaseomyces glabratus CBS138 2020 INSDC GCA_010111755.1 no 0 0 13 Nakaseomyces glabratus CBS138 2020 FungiDB 5478 GCF_010111755.1_ASM1011175v1 GCA_010111755.1 GCF_010111755.1 True Nakaseomyces glabratus budding yeast N.glabratus (ATCC 2001 2020) https://genome.ucsc.edu/h/GCF_010111755.1 -Nakaseomyces glabratus DSY562 INSDC GCA_002219185.1 no 0 5 13 Nakaseomyces glabratus DSY562 FungiDB 5478 GCA_002219185.1_ASM221918v1 GCA_002219185.1 False Nakaseomyces glabratus budding yeast N.glabratus (DSY562 2017) https://genome.ucsc.edu/h/GCA_002219185.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/219/185/GCA_002219185.1/genes/GCA_002219185.1_ASM221918v1.augustus.gtf.gz -Nosema granulosis Ou3-Ou53 INSDC GCA_015832245.1 yes 0 1754 0 Nosema granulosis Ou3-Ou53 MicrosporidiaDB 83296 GCA_015832245.1_ASM1583224v1 GCA_015832245.1 False Nosema granulosis microsporidians N.granulosis (Ou3-Ou53 2020) https://genome.ucsc.edu/h/GCA_015832245.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/015/832/245/GCA_015832245.1/genes/GCA_015832245.1_ASM1583224v1.augustus.gtf.gz -Naegleria lovaniensis strain ATCC 30569 INSDC GCA_003324165.2 yes 0 109 0 Naegleria lovaniensis strain ATCC 30569 AmoebaDB 51637 GCF_003324165.1_Nlova_2.1 GCA_003324165.2 GCF_003324165.1 False Naegleria lovaniensis N.lovaniensis (ATCC 30569 2021) https://genome.ucsc.edu/h/GCF_003324165.1 -Naegleria lovaniensis NL_76_15_250 INSDC GCA_022530875.1 no 0 199 0 Naegleria lovaniensis NL_76_15_250 AmoebaDB 51637 GCA_022530875.1_ASM2253087v1 GCA_022530875.1 False Naegleria lovaniensis N.lovaniensis (NL_76_15_250 2022) https://genome.ucsc.edu/h/GCA_022530875.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/022/530/875/GCA_022530875.1/genes/GCA_022530875.1_ASM2253087v1.augustus.gtf.gz -Nematocida major JUm2507 INSDC GCA_021653875.1 yes 0 111 0 Nematocida major JUm2507 MicrosporidiaDB 1912982 GCF_021653875.1_ASM2165387v1 GCA_021653875.1 GCF_021653875.1 True Nematocida major microsporidians N.major (JUm2507 2022) https://genome.ucsc.edu/h/GCF_021653875.1 -Ordospora colligata FI-SK-17-1 INSDC GCA_004325055.1 no 0 26 0 Ordospora colligata FI-SK-17-1 MicrosporidiaDB 174685 GCA_004325055.1_Ordospora_FISK_v1 GCA_004325055.1 False Ordospora colligata microsporidians O.colligata (FI-SK-17-1 2019) https://genome.ucsc.edu/h/GCA_004325055.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/325/055/GCA_004325055.1/genes/GCA_004325055.1_Ordospora_FISK_v1.augustus.gtf.gz -Ordospora colligata GB-EP-1 INSDC GCA_004324935.1 no 0 18 0 Ordospora colligata GB-EP-1 MicrosporidiaDB 174685 GCA_004324935.1_Ordospora_GBEP_v1 GCA_004324935.1 False Ordospora colligata microsporidians O.colligata (GB-EP-1 2019) https://genome.ucsc.edu/h/GCA_004324935.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/324/935/GCA_004324935.1/genes/GCA_004324935.1_Ordospora_GBEP_v1.augustus.gtf.gz -Ordospora colligata NO-V-7 INSDC GCA_004324945.1 no 0 21 0 Ordospora colligata NO-V-7 MicrosporidiaDB 174685 GCA_004324945.1_Ordospora_NOV7_v1 GCA_004324945.1 False Ordospora colligata microsporidians O.colligata (NO-V-7 2019) https://genome.ucsc.edu/h/GCA_004324945.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/324/945/GCA_004324945.1/genes/GCA_004324945.1_Ordospora_NOV7_v1.augustus.gtf.gz -Plasmodium adleri G01 GenBank GCA_900097015.1 yes 68 0 14 Plasmodium adleri G01 PlasmoDB 880535 GCF_900097015.1_PADLG01 GCA_900097015.1 GCF_900097015.1 True Plasmodium sp. gorilla clade G2 apicomplexans P.sp. gorilla clade G2 (2018) https://genome.ucsc.edu/h/GCF_900097015.1 -Podosphaera aphanis DRCT72020 INSDC GCA_022627015.2 yes 0 12702 0 Podosphaera aphanis DRCT72020 FungiDB 79252 GCA_022627015.2_ASM2262701v2 GCA_022627015.2 False Podosphaera aphanis powdery mildews (DRCT72020 2022) https://genome.ucsc.edu/h/GCA_022627015.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/022/627/015/GCA_022627015.2/genes/GCA_022627015.2_ASM2262701v2.augustus.gtf.gz -Phlebotomus argentipes India INSDC GCF_947086385.1 yes 0 64 0 Phlebotomus argentipes India VectorBase 94469 GCF_947086385.1_Phlebotomus_argentipes_genome_assembly GCA_947086385.1 GCF_947086385.1 True Phlebotomus argentipes fly P.argentipes (2022) https://genome.ucsc.edu/h/GCF_947086385.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/947/086/385/GCF_947086385.1/genes/GCF_947086385.1_Phlebotomus_argentipes_genome_assembly.ncbiRefSeq.gtf.gz -Phialophora attinorum CBS 131958 INSDC GCF_001299255.1 yes 0 131 0 Phialophora attinorum CBS 131958 FungiDB 1664694 GCF_001299255.1_ASM129925v1 GCA_001299255.1 GCF_001299255.1 True Cyphellophora attinorum ascomycetes P.attinorum https://genome.ucsc.edu/h/GCF_001299255.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/001/299/255/GCF_001299255.1/genes/GCF_001299255.1_ASM129925v1.ncbiRefSeq.gtf.gz -Plasmodium billcollinsi G01 GenBank GCA_900257145.2 yes 0 0 14 Plasmodium billcollinsi G01 PlasmoDB 720590 GCA_900257145.2_Plasmodium_billcollinsi GCA_900257145.2 False Plasmodium sp. DRC-Itaito apicomplexans P.sp. DRC-Itaito (2020) https://genome.ucsc.edu/h/GCA_900257145.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/257/145/GCA_900257145.2/genes/GCA_900257145.2_Plasmodium_billcollinsi.augustus.gtf.gz -Plasmodium blacklocki G01 GenBank GCA_900097035.1 yes 83 0 14 Plasmodium blacklocki G01 PlasmoDB 880536 GCA_900097035.1_PBLACG01 GCA_900097035.1 False Plasmodium sp. gorilla clade G3 apicomplexans P.sp. gorilla clade G3 (2018) https://genome.ucsc.edu/h/GCA_900097035.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/097/035/GCA_900097035.1/genes/GCA_900097035.1_PBLACG01.augustus.gtf.gz -Plasmodium brasilianum strain Bolivian I INSDC GCA_023973825.1 yes 0 29 14 Plasmodium brasilianum strain Bolivian I PlasmoDB 5824 GCF_023973825.1_ASM2397382v1 GCA_023973825.1 GCF_023973825.1 False Plasmodium brasilianum apicomplexans P.brasilianum (Bolivian I 2022) https://genome.ucsc.edu/h/GCF_023973825.1 -Phytophthora cactorum 10300 INSDC GCA_003287315.1 yes 0 4623 0 Phytophthora cactorum 10300 FungiDB 29920 GCA_003287315.1_Pcac_10300_v1 GCA_003287315.1 False Phytophthora cactorum downy mildews (10300 2018) https://genome.ucsc.edu/h/GCA_003287315.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/287/315/GCA_003287315.1/genes/GCA_003287315.1_Pcac_10300_v1.augustus.gtf.gz -Pneumocystis canis CanA INSDC GCA_017788925.1 yes 0 33 0 Pneumocystis canis CanA FungiDB 2698477 GCA_017788925.1_ASM1778892v1 GCA_017788925.1 False Pneumocystis canis ascomycetes P.canis (CanA 2021) https://genome.ucsc.edu/h/GCA_017788925.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/788/925/GCA_017788925.1/genes/GCA_017788925.1_ASM1778892v1.augustus.gtf.gz -Phytophthora cinnamomi GKB4 INSDC GCA_018691715.1 yes 0 133 0 Phytophthora cinnamomi GKB4 FungiDB 4785 GCA_018691715.1_ASM1869171v1 GCA_018691715.1 GCF_018691715.1 True Phytophthora cinnamomi downy mildews (GKB4 2021) https://genome.ucsc.edu/h/GCA_018691715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/018/691/715/GCA_018691715.1/genes/GCA_018691715.1_ASM1869171v1.augustus.gtf.gz -Plasmodium coatneyi Hackeri GenBank GCA_001680005.1 yes 0 0 14 Plasmodium coatneyi Hackeri PlasmoDB 208452 GCF_001680005.1_ASM168000v1 GCA_001680005.1 GCF_001680005.1 True Plasmodium coatneyi apicomplexans P.coatneyi (Hackeri 2016) https://genome.ucsc.edu/h/GCF_001680005.1 -Podospora comata strain T mat+ INSDC GCA_900290415.1 yes 0 0 7 Podospora comata strain T mat+ FungiDB 48703 GCA_900290415.1_version1 GCA_900290415.1 False Podospora comata ascomycetes P.comata (T 2018) https://genome.ucsc.edu/h/GCA_900290415.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/290/415/GCA_900290415.1/genes/GCA_900290415.1_version1.augustus.gtf.gz -Paratrypanosoma confusum CUL13 GenBank GCA_002921335.1 yes 1922 266 0 Paratrypanosoma confusum CUL13 TriTrypDB 1470209 GCA_002921335.1_ASM292133v1 GCA_002921335.1 False Paratrypanosoma confusum Paratrypanosoma confusum (CUL13MS 2018) https://genome.ucsc.edu/h/GCA_002921335.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/921/335/GCA_002921335.1/genes/GCA_002921335.1_ASM292133v1.augustus.gtf.gz -Peronospora effusa R13 INSDC GCA_003843895.1 yes 0 784 0 Peronospora effusa R13 FungiDB 542832 GCA_003843895.1_ASM384389v1 GCA_003843895.1 False Peronospora effusa downy mildews (R13 2018) https://genome.ucsc.edu/h/GCA_003843895.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/843/895/GCA_003843895.1/genes/GCA_003843895.1_ASM384389v1.augustus.gtf.gz -Penicillium expansum d1 INSDC GCA_000769735.1 yes 0 270 0 Penicillium expansum d1 FungiDB 27334 GCA_000769735.1_ASM76973v1 GCA_000769735.1 False Penicillium expansum ascomycetes P.expansum (d1 2014) https://genome.ucsc.edu/h/GCA_000769735.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/769/735/GCA_000769735.1/genes/GCA_000769735.1_ASM76973v1.augustus.gtf.gz -Plasmodium falciparum 7G8 2019 INSDC GCA_009761555.1 no 0 20 0 Plasmodium falciparum 7G8 2019 PlasmoDB 5833 GCA_009761555.1_7G8_v1 GCA_009761555.1 False Plasmodium falciparum malaria parasite P. falciparum (7G8 2019) https://genome.ucsc.edu/h/GCA_009761555.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/761/555/GCA_009761555.1/genes/GCA_009761555.1_7G8_v1.augustus.gtf.gz -Plasmodium falciparum CD01 GenBank GCA_900617135.1 no 5 0 14 Plasmodium falciparum CD01 PlasmoDB 5833 GCA_900617135.1_PfCD01-2 GCA_900617135.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900617135.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/617/135/GCA_900617135.1/genes/GCA_900617135.1_PfCD01-2.augustus.gtf.gz -Plasmodium falciparum GA01 GenBank GCA_900632005.1 no 4 0 14 Plasmodium falciparum GA01 PlasmoDB 5833 GCA_900632005.1_PfGA01-3 GCA_900632005.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632005.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/005/GCA_900632005.1/genes/GCA_900632005.1_PfGA01-3.augustus.gtf.gz -Plasmodium falciparum GB4 GenBank GCA_900632035.1 no 10 0 14 Plasmodium falciparum GB4 PlasmoDB 5833 GCA_900632035.1_PfGB4-3 GCA_900632035.1 False Plasmodium falciparum malaria parasite P. falciparum (GB4 2018) https://genome.ucsc.edu/h/GCA_900632035.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/035/GCA_900632035.1/genes/GCA_900632035.1_PfGB4-3.augustus.gtf.gz -Plasmodium falciparum GN01 GenBank GCA_900631995.1 no 3 0 14 Plasmodium falciparum GN01 PlasmoDB 5833 GCA_900631995.1_PfGN01-3 GCA_900631995.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900631995.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/631/995/GCA_900631995.1/genes/GCA_900631995.1_PfGN01-3.augustus.gtf.gz -Plasmodium falciparum IT GenBank GCA_900632055.1 no 11 0 14 Plasmodium falciparum IT PlasmoDB 5833 GCA_900632055.1_PfIT-3 GCA_900632055.1 False Plasmodium falciparum malaria parasite P. falciparum (type strain: I 2018) https://genome.ucsc.edu/h/GCA_900632055.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/055/GCA_900632055.1/genes/GCA_900632055.1_PfIT-3.augustus.gtf.gz -Plasmodium falciparum KE01 GenBank GCA_900631975.1 no 5 0 14 Plasmodium falciparum KE01 PlasmoDB 5833 GCA_900631975.1_PfKE01-3 GCA_900631975.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900631975.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/631/975/GCA_900631975.1/genes/GCA_900631975.1_PfKE01-3.augustus.gtf.gz -Plasmodium falciparum KH01 GenBank GCA_900632025.1 no 6 0 14 Plasmodium falciparum KH01 PlasmoDB 5833 GCA_900632025.1_PfKH01-3 GCA_900632025.1 False Plasmodium falciparum malaria parasite P. falciparum (KH1 2018) https://genome.ucsc.edu/h/GCA_900632025.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/025/GCA_900632025.1/genes/GCA_900632025.1_PfKH01-3.augustus.gtf.gz -Plasmodium falciparum KH02 GenBank GCA_900632015.1 no 5 0 14 Plasmodium falciparum KH02 PlasmoDB 5833 GCA_900632015.1_PfKH02-3 GCA_900632015.1 False Plasmodium falciparum malaria parasite P. falciparum (KH2 2018) https://genome.ucsc.edu/h/GCA_900632015.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/015/GCA_900632015.1/genes/GCA_900632015.1_PfKH02-3.augustus.gtf.gz -Plasmodium falciparum ML01 GenBank GCA_900632085.1 no 101 0 14 Plasmodium falciparum ML01 PlasmoDB 5833 GCA_900632085.1_PfML01-3 GCA_900632085.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632085.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/085/GCA_900632085.1/genes/GCA_900632085.1_PfML01-3.augustus.gtf.gz -Plasmodium falciparum NF135.C10 INSDC GCA_009761425.1 no 0 21 0 Plasmodium falciparum NF135.C10 PlasmoDB 5833 GCA_009761425.1_NF135.C10_v1 GCA_009761425.1 False Plasmodium falciparum malaria parasite P. falciparum (NF135.C10 2019) https://genome.ucsc.edu/h/GCA_009761425.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/761/425/GCA_009761425.1/genes/GCA_009761425.1_NF135.C10_v1.augustus.gtf.gz -Plasmodium falciparum NF166 INSDC GCA_009761515.1 no 0 30 0 Plasmodium falciparum NF166 PlasmoDB 5833 GCA_009761515.1_NF166_v1 GCA_009761515.1 False Plasmodium falciparum malaria parasite P. falciparum (NF166 2019) https://genome.ucsc.edu/h/GCA_009761515.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/009/761/515/GCA_009761515.1/genes/GCA_009761515.1_NF166_v1.augustus.gtf.gz -Plasmodium falciparum SD01 GenBank GCA_900632095.1 no 4 0 13 Plasmodium falciparum SD01 PlasmoDB 5833 GCA_900632095.1_PfSD01-3 GCA_900632095.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632095.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/095/GCA_900632095.1/genes/GCA_900632095.1_PfSD01-3.augustus.gtf.gz -Plasmodium falciparum SN01 GenBank GCA_900632075.1 no 20 0 14 Plasmodium falciparum SN01 PlasmoDB 5833 GCA_900632075.1_PfSN01-3 GCA_900632075.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632075.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/075/GCA_900632075.1/genes/GCA_900632075.1_PfSN01-3.augustus.gtf.gz -Plasmodium falciparum TG01 GenBank GCA_900632065.1 no 63 0 14 Plasmodium falciparum TG01 PlasmoDB 5833 GCA_900632065.1_PfTG01-3 GCA_900632065.1 False Plasmodium falciparum malaria parasite P. falciparum (2018) https://genome.ucsc.edu/h/GCA_900632065.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/632/065/GCA_900632065.1/genes/GCA_900632065.1_PfTG01-3.augustus.gtf.gz -Plasmodium fragile strain nilgiri GenBank GCA_000956335.1 yes 0 247 0 Plasmodium fragile strain nilgiri PlasmoDB 5857 GCF_000956335.1_Plas_frag_nilgiri_V1 GCA_000956335.1 GCF_000956335.1 True Plasmodium fragile apicomplexans P.fragile (nilgiri 2015) https://genome.ucsc.edu/h/GCF_000956335.1 -Plasmodium gaboni strain G01 GenBank GCA_900097045.1 no 82 0 14 Plasmodium gaboni strain G01 PlasmoDB 647221 GCA_900097045.1_PGABG01 GCA_900097045.1 False Plasmodium gaboni apicomplexans P.gaboni (2021) https://genome.ucsc.edu/h/GCA_900097045.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/097/045/GCA_900097045.1/genes/GCA_900097045.1_PGABG01.augustus.gtf.gz -Plasmodium gaboni strain SY75 GenBank GCA_001602025.1 yes 818 0 14 Plasmodium gaboni strain SY75 PlasmoDB 647221 GCF_001602025.1_ASM160202v1 GCA_001602025.1 GCF_001602025.1 True Plasmodium gaboni apicomplexans P.gaboni (SY75 2016) https://genome.ucsc.edu/h/GCF_001602025.1 -Plasmodium gallinaceum 8A GenBank GCA_900005855.1 yes 152 0 0 Plasmodium gallinaceum 8A PlasmoDB 5849 GCF_900005855.1_PGAL8A GCA_900005855.1 GCF_900005855.1 False Plasmodium gallinaceum apicomplexans P.gallinaceum (8A 2016) https://genome.ucsc.edu/h/GCF_900005855.1 -Porcisia hertigi MCOE/PA/1965/C119 INSDC GCA_017918235.1 yes 0 38 36 Porcisia hertigi MCOE/PA/1965/C119 TriTrypDB 2761500 GCA_017918235.1_LU_Pher_1.0 GCA_017918235.1 GCF_017918235.1 True Porcisia hertigi Porcisia hertigi (C119 2021) https://genome.ucsc.edu/h/GCA_017918235.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/918/235/GCA_017918235.1/genes/GCA_017918235.1_LU_Pher_1.0.augustus.gtf.gz -Pediculus humanus USDA INSDC GCA_000006295.1 yes 0 1882 0 Pediculus humanus USDA VectorBase 121224 GCF_000006295.1_JCVI_LOUSE_1.0 GCA_000006295.1 GCF_000006295.1 True Pediculus humanus corporis human body louse https://genome.ucsc.edu/h/GCF_000006295.1 -Plasmodium knowlesi strain A1H1 INSDC GCA_900162085.1 no 0 0 14 Plasmodium knowlesi strain A1H1 PlasmoDB 5850 GCA_900162085.1_PkA1H1_v1 GCA_900162085.1 False Plasmodium knowlesi apicomplexans P.knowlesi (2017) https://genome.ucsc.edu/h/GCA_900162085.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/162/085/GCA_900162085.1/genes/GCA_900162085.1_PkA1H1_v1.augustus.gtf.gz -Plasmodium knowlesi strain Malayan Strain Pk1 A GenBank GCA_002140095.1 no 0 28 0 Plasmodium knowlesi strain Malayan Strain Pk1 A PlasmoDB 5850 GCA_002140095.1_PKNOHv1 GCA_002140095.1 False Plasmodium knowlesi apicomplexans P.knowlesi (Malayan Strain Pk1 A 2017) https://genome.ucsc.edu/h/GCA_002140095.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/140/095/GCA_002140095.1/genes/GCA_002140095.1_PKNOHv1.augustus.gtf.gz -Pichia kudriavzevii strain CBS5147 INSDC GCA_003054405.1 no 0 0 5 Pichia kudriavzevii strain CBS5147 FungiDB 4909 GCA_003054405.1_ASM305440v1 GCA_003054405.1 False Pichia kudriavzevii budding yeast P.kudriavzevii (CBS5147 2018) https://genome.ucsc.edu/h/GCA_003054405.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/054/405/GCA_003054405.1/genes/GCA_003054405.1_ASM305440v1.augustus.gtf.gz -Pichia kudriavzevii strain CBS573 INSDC GCA_003054445.1 yes 0 0 5 Pichia kudriavzevii strain CBS573 FungiDB 4909 GCF_003054445.1_ASM305444v1 GCA_003054445.1 GCF_003054445.1 False Pichia kudriavzevii budding yeast P.kudriavzevii https://genome.ucsc.edu/h/GCF_003054445.1 -Pneumocystis sp. macacae isolate P2C INSDC GCA_018127085.1 yes 0 3 16 Pneumocystis sp. 'macacae' P2C FungiDB 2698480 GCA_018127085.1_P2C.v1.0 GCA_018127085.1 False Pneumocystis sp. 'macacae' ascomycetes P.sp. 'macacae' (P2C 2021) https://genome.ucsc.edu/h/GCA_018127085.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/018/127/085/GCA_018127085.1/genes/GCA_018127085.1_P2C.v1.0.augustus.gtf.gz -Plasmodium malariae UG01 GenBank GCA_900090045.1 yes 47 0 14 Plasmodium malariae UG01 PlasmoDB 5858 GCF_900090045.1_PmUG01 GCA_900090045.1 GCF_900090045.1 False Plasmodium malariae Plasmodium malariae (2016) https://genome.ucsc.edu/h/GCF_900090045.1 -Pseudoloma neurophilia strain MK1 GenBank GCA_001432165.1 yes 1603 0 0 Pseudoloma neurophilia strain MK1 MicrosporidiaDB 146866 GCA_001432165.1_ASM143216v1 GCA_001432165.1 False Pseudoloma neurophilia microsporidians P.neurophilia (MK1 2015) https://genome.ucsc.edu/h/GCA_001432165.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/432/165/GCA_001432165.1/genes/GCA_001432165.1_ASM143216v1.augustus.gtf.gz -Pneumocystis oryctolagi CS1 INSDC GCA_017311285.1 yes 0 38 0 Pneumocystis oryctolagi CS1 FungiDB 42067 GCA_017311285.1_Pneumocystis_oryctolagi_MERGE_1.1 GCA_017311285.1 False Pneumocystis oryctolagi ascomycetes P.oryctolagi (RABM 2021) https://genome.ucsc.edu/h/GCA_017311285.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/311/285/GCA_017311285.1/genes/GCA_017311285.1_Pneumocystis_oryctolagi_MERGE_1.1.augustus.gtf.gz -Plasmodium ovale curtisi GH01 GenBank GCA_900090035.2 yes 638 0 14 Plasmodium ovale curtisi GH01 PlasmoDB 36330 GCA_900090035.2_PocGH01 GCA_900090035.2 False Plasmodium ovale malaria parasite P. ovale (2016) https://genome.ucsc.edu/h/GCA_900090035.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/090/035/GCA_900090035.2/genes/GCA_900090035.2_PocGH01.augustus.gtf.gz -Plasmodium ovale wallikeri PowCR01 INSDC GCA_900090025.2 no 0 763 14 Plasmodium ovale wallikeri PowCR01 PlasmoDB 36330 GCA_900090025.2_PowCR01 GCA_900090025.2 False Plasmodium ovale malaria parasite P. ovale (2016) https://genome.ucsc.edu/h/GCA_900090025.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/090/025/GCA_900090025.2/genes/GCA_900090025.2_PowCR01.augustus.gtf.gz -Phytophthora palmivora var. palmivora strain sbr112.9 GenBank GCA_002911725.1 yes 24809 0 0 Phytophthora palmivora var. palmivora strain sbr112.9 FungiDB 4796 GCA_002911725.1_ASM291172v1 GCA_002911725.1 False Phytophthora palmivora downy mildews (sbr112.9 2018) https://genome.ucsc.edu/h/GCA_002911725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/911/725/GCA_002911725.1/genes/GCA_002911725.1_ASM291172v1.augustus.gtf.gz -Phlebotomus papatasi Israel INSDC GCA_000262795.1 no 0 106826 0 Phlebotomus papatasi Israel VectorBase 29031 GCA_000262795.1_Ppap_1.0 GCA_000262795.1 False Phlebotomus papatasi fly P.papatasi (2012) https://genome.ucsc.edu/h/GCA_000262795.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/262/795/GCA_000262795.1/genes/GCA_000262795.1_Ppap_1.0.augustus.gtf.gz -Phlebotomus papatasi M1 INSDC GCF_024763615.1 yes 0 640 5 Phlebotomus papatasi M1 VectorBase 29031 GCF_024763615.1_Ppap_2.1 GCA_024763615.2 GCF_024763615.1 False Phlebotomus papatasi fly P.papatasi (M1 2022) https://genome.ucsc.edu/h/GCF_024763615.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/024/763/615/GCF_024763615.1/genes/GCF_024763615.1_Ppap_2.1.ncbiRefSeq.gtf.gz -Pyricularia pennisetigena Br36 INSDC GCA_004337985.1 yes 0 103 5 Pyricularia pennisetigena Br36 FungiDB 1578925 GCF_004337985.1_PpBr36 GCA_004337985.1 GCF_004337985.1 True Pyricularia pennisetigena ascomycetes P.pennisetigena (Br36 2019 refseq) https://genome.ucsc.edu/h/GCF_004337985.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/337/985/GCA_004337985.1/genes/GCA_004337985.1_PpBr36.augustus.gtf.gz -Phytophthora plurivora AV1007 GenBank GCA_002247145.1 yes 1897 0 0 Phytophthora plurivora AV1007 FungiDB 639000 GCA_002247145.1_Plurivora_assembly_v1.fn GCA_002247145.1 False Phytophthora plurivora downy mildews (AV1007 2017) https://genome.ucsc.edu/h/GCA_002247145.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/247/145/GCA_002247145.1/genes/GCA_002247145.1_Plurivora_assembly_v1.fn.augustus.gtf.gz -Plasmodium praefalciparum strain G01 INSDC GCA_900095595.1 yes 0 39 14 Plasmodium praefalciparum strain G01 PlasmoDB 880534 GCA_900095595.1_PPRFG01 GCA_900095595.1 False Plasmodium sp. gorilla clade G1 apicomplexans P.sp. gorilla clade G1 (2018) https://genome.ucsc.edu/h/GCA_900095595.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/095/595/GCA_900095595.1/genes/GCA_900095595.1_PPRFG01.augustus.gtf.gz -Phytophthora ramorum 14567 INSDC GCA_020800235.1 no 0 27 0 Phytophthora ramorum 14567 FungiDB 164328 GCA_020800235.1_ASM2080023v1 GCA_020800235.1 False Phytophthora ramorum sudden oak death agent (14567 PR-15-019 primary hap 2021) https://genome.ucsc.edu/h/GCA_020800235.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/800/235/GCA_020800235.1/genes/GCA_020800235.1_ASM2080023v1.augustus.gtf.gz -Phytophthora ramorum strain Pr102 GenBank GCA_020800215.1 yes 0 28 0 Phytophthora ramorum strain Pr102 FungiDB 164328 GCA_020800215.1_PR-102_v3_p GCA_020800215.1 GCF_020800215.1 True Phytophthora ramorum sudden oak death agent (Pr-102 primary hap 2021) https://genome.ucsc.edu/h/GCA_020800215.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/800/215/GCA_020800215.1/genes/GCA_020800215.1_PR-102_v3_p.augustus.gtf.gz -Plasmodium reichenowi CDC GenBank GCA_000723685.1 yes 356 0 14 Plasmodium reichenowi CDC PlasmoDB 5854 GCF_000723685.1_PREICH001 GCA_000723685.1 GCF_000723685.1 True Plasmodium reichenowi apicomplexans P.reichenowi (CDC 2014) https://genome.ucsc.edu/h/GCF_000723685.1 -Plasmodium reichenowi G01 GenBank GCA_900097025.1 no 34 0 14 Plasmodium reichenowi G01 PlasmoDB 5854 GCA_900097025.1_PRG01 GCA_900097025.1 False Plasmodium reichenowi apicomplexans P.reichenowi (2018) https://genome.ucsc.edu/h/GCA_900097025.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/097/025/GCA_900097025.1/genes/GCA_900097025.1_PRG01.augustus.gtf.gz -Plasmodium relictum SGS1-like GenBank GCA_900005765.1 yes 460 0 14 Plasmodium relictum SGS1-like PlasmoDB 85471 GCF_900005765.1_PRELSG GCA_900005765.1 GCF_900005765.1 False Plasmodium relictum apicomplexans P.relictum (SGS1 2016) https://genome.ucsc.edu/h/GCF_900005765.1 -Puccinia sorghi strain RO10H11247 INSDC GCA_001263375.1 yes 0 15715 0 Puccinia sorghi strain RO10H11247 FungiDB 27349 GCA_001263375.1_ASM126337v1 GCA_001263375.1 False Puccinia sorghi rust P.sorghi (RO10H11247 2015) https://genome.ucsc.edu/h/GCA_001263375.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/263/375/GCA_001263375.1/genes/GCA_001263375.1_ASM126337v1.augustus.gtf.gz -Puccinia striiformis strain 93-210 INSDC GCA_002920065.1 yes 0 492 0 Puccinia striiformis strain 93-210 FungiDB 27350 GCA_002920065.1_ASM292006v1 GCA_002920065.1 False Puccinia striiformis rust P.striiformis (93-210 2018) https://genome.ucsc.edu/h/GCA_002920065.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/920/065/GCA_002920065.1/genes/GCA_002920065.1_ASM292006v1.augustus.gtf.gz -Puccinia striiformis 93TX-2 INSDC GCA_002920205.1 no 0 561 0 Puccinia striiformis 93TX-2 FungiDB 27350 GCA_002920205.1_ASM292020v1 GCA_002920205.1 False Puccinia striiformis rust P.striiformis (93TX-2 2018) https://genome.ucsc.edu/h/GCA_002920205.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/920/205/GCA_002920205.1/genes/GCA_002920205.1_ASM292020v1.augustus.gtf.gz -Paecilomyces variotii CBS 101075 INSDC GCF_004022145.1 yes 0 86 0 Paecilomyces variotii CBS 101075 FungiDB 264951 GCF_004022145.1_Paevar1 GCA_004022145.1 GCF_004022145.1 True Paecilomyces variotii ascomycetes B.spectabilis https://genome.ucsc.edu/h/GCF_004022145.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/004/022/145/GCF_004022145.1/genes/GCF_004022145.1_Paevar1.ncbiRefSeq.gtf.gz -Plasmodium vinckei Cameroon EL INSDC GCA_903994265.1 no 0 0 14 Plasmodium vinckei Cameroon EL PlasmoDB 5860 GCA_903994265.1_PVSEL_v1 GCA_903994265.1 False Plasmodium vinckei apicomplexans P.vinckei (2020) https://genome.ucsc.edu/h/GCA_903994265.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/903/994/265/GCA_903994265.1/genes/GCA_903994265.1_PVSEL_v1.augustus.gtf.gz -Plasmodium vinckei brucechwatti DA INSDC GCA_903994205.1 no 0 0 14 Plasmodium vinckei brucechwatti DA PlasmoDB 119398 GCA_903994205.1_PVBDA_v1 GCA_903994205.1 False Plasmodium vinckei brucechwatti apicomplexans P.vinckei brucechwatti (2020) https://genome.ucsc.edu/h/GCA_903994205.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/903/994/205/GCA_903994205.1/genes/GCA_903994205.1_PVBDA_v1.augustus.gtf.gz -Plasmodium vinckei lentum DE INSDC GCA_903994225.1 no 0 0 14 Plasmodium vinckei lentum DE PlasmoDB 138297 GCA_903994225.1_PVLDE_v1 GCA_903994225.1 False Plasmodium vinckei lentum apicomplexans P.vinckei lentum (2020) https://genome.ucsc.edu/h/GCA_903994225.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/903/994/225/GCA_903994225.1/genes/GCA_903994225.1_PVLDE_v1.augustus.gtf.gz -Plasmodium vinckei petteri strain CR GenBank GCA_000524515.1 no 0 66 0 Plasmodium vinckei petteri strain CR PlasmoDB 138298 GCA_000524515.1_Plas_vinc_pett_CR_V1 GCA_000524515.1 False Plasmodium vinckei petteri apicomplexans P.vinckei petteri (CR 2014) https://genome.ucsc.edu/h/GCA_000524515.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/524/515/GCA_000524515.1/genes/GCA_000524515.1_Plas_vinc_pett_CR_V1.augustus.gtf.gz -Plasmodium vinckei petteri CR 2020 INSDC GCA_903994235.1 no 0 0 14 Plasmodium vinckei petteri CR 2020 PlasmoDB 138298 GCA_903994235.1_PVPCR_v1 GCA_903994235.1 False Plasmodium vinckei petteri apicomplexans P.vinckei petteri (2020) https://genome.ucsc.edu/h/GCA_903994235.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/903/994/235/GCA_903994235.1/genes/GCA_903994235.1_PVPCR_v1.augustus.gtf.gz -Plasmodium vinckei vinckei CY INSDC GCA_900681995.1 yes 0 0 14 Plasmodium vinckei vinckei CY PlasmoDB 54757 GCF_900681995.1_PVVCY_v1 GCA_900681995.1 GCF_900681995.1 True Plasmodium vinckei vinckei apicomplexans P.vinckei vinckei (2019) https://genome.ucsc.edu/h/GCF_900681995.1 -Plasmodium vinckei vinckei strain vinckei GenBank GCA_000709005.1 no 0 49 0 Plasmodium vinckei vinckei strain vinckei PlasmoDB 54757 GCF_000709005.1_Plas_vinc_vinckei_V1 GCA_000709005.1 GCF_000709005.1 True Plasmodium vinckei vinckei apicomplexans P.vinckei (vinckei 2014) https://genome.ucsc.edu/h/GCF_000709005.1 -Plasmodium vivax P01 GenBank GCA_900093555.2 yes 226 0 14 Plasmodium vivax P01 PlasmoDB 5855 GCA_900093555.2_GCA_900093555 GCA_900093555.2 False Plasmodium vivax malaria parasite P. vivax (PvP01 2019) https://genome.ucsc.edu/h/GCA_900093555.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/093/555/GCA_900093555.2/genes/GCA_900093555.2_GCA_900093555.augustus.gtf.gz -Plasmodium vivax PAM INSDC GCA_949152365.1 no 0 28 0 Plasmodium vivax PAM PlasmoDB 5855 GCA_949152365.1_PVPAM GCA_949152365.1 False Plasmodium vivax malaria parasite P. vivax (Pv01-19 2023) https://genome.ucsc.edu/h/GCA_949152365.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/949/152/365/GCA_949152365.1/genes/GCA_949152365.1_PVPAM.augustus.gtf.gz -Plasmodium vivax PvSY56 INSDC GCA_003402215.1 no 0 14 0 Plasmodium vivax PvSY56 PlasmoDB 5855 GCA_003402215.1_PvSY56_v1 GCA_003402215.1 False Plasmodium vivax malaria parasite P. vivax (PvSY56 2018) https://genome.ucsc.edu/h/GCA_003402215.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/402/215/GCA_003402215.1/genes/GCA_003402215.1_PvSY56_v1.augustus.gtf.gz -Plasmodium vivax PvW1 INSDC GCA_914969965.1 no 0 19 0 Plasmodium vivax PvW1 PlasmoDB 5855 GCA_914969965.1_5987STDY8548200 GCA_914969965.1 False Plasmodium vivax malaria parasite P. vivax (PvW1 2021) https://genome.ucsc.edu/h/GCA_914969965.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/914/969/965/GCA_914969965.1/genes/GCA_914969965.1_5987STDY8548200.augustus.gtf.gz -Pneumocystis wakefieldiae 2A INSDC GCA_017301755.1 yes 0 0 17 Pneumocystis wakefieldiae 2A FungiDB 38082 GCA_017301755.1_ASM1730175v1 GCA_017301755.1 False Pneumocystis wakefieldiae ascomycetes P.wakefieldiae (2A 2021) https://genome.ucsc.edu/h/GCA_017301755.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/017/301/755/GCA_017301755.1/genes/GCA_017301755.1_ASM1730175v1.augustus.gtf.gz -Plasmodium yoelii yoelii 17X GenBank GCA_900002385.2 yes 0 0 14 Plasmodium yoelii yoelii 17X PlasmoDB 5861 GCF_900002385.2_GCA_900002385 GCA_900002385.2 GCF_900002385.2 False Plasmodium yoelii apicomplexans P.yoelii (17X 2019) https://genome.ucsc.edu/h/GCF_900002385.2 -Plasmodium yoelii yoelii 17XNL 2023 INSDC GCA_020844765.3 no 0 0 14 Plasmodium yoelii yoelii 17XNL 2023 PlasmoDB 73239 GCA_020844765.3_17XNL_PSU_2 GCA_020844765.3 False Plasmodium yoelii yoelii apicomplexans P.yoelii yoelii (17XNL clone 1.1 2023) https://genome.ucsc.edu/h/GCA_020844765.3 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/844/765/GCA_020844765.3/genes/GCA_020844765.3_17XNL_PSU_2.augustus.gtf.gz -Plasmodium yoelii yoelii YM INSDC GCA_900002395.1 no 0 181 14 Plasmodium yoelii yoelii YM PlasmoDB 5861 GCA_900002395.1_PYYM01 GCA_900002395.1 False Plasmodium yoelii apicomplexans P.yoelii (YM 2014) https://genome.ucsc.edu/h/GCA_900002395.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/002/395/GCA_900002395.1/genes/GCA_900002395.1_PYYM01.augustus.gtf.gz -Rhipicephalus annulatus KleinGrass INSDC GCA_013436015.1 yes 0 16339 0 Rhipicephalus annulatus KleinGrass VectorBase 34611 GCA_013436015.1_TxGen_Rann GCA_013436015.1 False Rhipicephalus annulatus mite/tick R.annulatus (Klein Grass 2020) https://genome.ucsc.edu/h/GCA_013436015.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/436/015/GCA_013436015.1/genes/GCA_013436015.1_TxGen_Rann.augustus.gtf.gz -Rhizophagus irregularis A1 (DAOM-664342) GenBank GCA_001593125.1 no 11196 0 0 Rhizophagus irregularis A1 (DAOM-664342) FungiDB 588596 GCA_001593125.1_ASM159312v1 GCA_001593125.1 False Rhizophagus irregularis glomeromycetes (A1 2016) https://genome.ucsc.edu/h/GCA_001593125.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/593/125/GCA_001593125.1/genes/GCA_001593125.1_ASM159312v1.augustus.gtf.gz -Rhizophagus irregularis C2 INSDC GCA_020716745.1 no 0 0 33 Rhizophagus irregularis C2 FungiDB 588596 GCA_020716745.1_ASM2071674v1 GCA_020716745.1 False Rhizophagus irregularis glomeromycetes (C2 2021) https://genome.ucsc.edu/h/GCA_020716745.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/020/716/745/GCA_020716745.1/genes/GCA_020716745.1_ASM2071674v1.augustus.gtf.gz -Raffaelea lauricola RL4 INSDC GCA_014183025.1 yes 0 169 0 Raffaelea lauricola RL4 FungiDB 483707 GCA_014183025.1_ASM1418302v1 GCA_014183025.1 False Harringtonia lauricola ascomycetes H.lauricola (RL4 2020) https://genome.ucsc.edu/h/GCA_014183025.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/183/025/GCA_014183025.1/genes/GCA_014183025.1_ASM1418302v1.augustus.gtf.gz -Rickenella mellea Ricmel1 INSDC GCA_004355085.1 yes 0 848 0 Rickenella mellea Ricmel1 FungiDB 50990 GCA_004355085.1_Ricmel1 GCA_004355085.1 False Rickenella mellea basidiomycetes R.mellea (SZMC22713 2019) https://genome.ucsc.edu/h/GCA_004355085.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/355/085/GCA_004355085.1/genes/GCA_004355085.1_Ricmel1.augustus.gtf.gz -Rhipicephalus microplus Rmic-2018 INSDC GCA_013339725.1 yes 7036 0 11 Rhipicephalus microplus Rmic-2018 VectorBase 6941 GCF_013339725.1_ASM1333972v1 GCA_013339725.1 GCF_013339725.1 False Rhipicephalus microplus southern cattle tick (Rmic-2018 2020 refseq) https://genome.ucsc.edu/h/GCF_013339725.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/339/725/GCA_013339725.1/genes/GCA_013339725.1_BIME_Rmic_1.3.augustus.gtf.gz -Rhizopus microsporus var. microsporus ATCC 52814 INSDC GCA_002083745.1 yes 0 560 0 Rhizopus microsporus var. microsporus ATCC 52814 FungiDB 86635 GCA_002083745.1_Rhimi_ATCC52814_1 GCA_002083745.1 False Rhizopus microsporus var. microsporus fungi R.microsporus var. microsporus (ATCC 52814 2017) https://genome.ucsc.edu/h/GCA_002083745.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/083/745/GCA_002083745.1/genes/GCA_002083745.1_Rhimi_ATCC52814_1.augustus.gtf.gz -Rattus norvegicus BN/NHsdMcwi INSDC GCA_015227675.2 yes 0 153 22 Rattus norvegicus BN/NHsdMcwi HostDB 10116 GCF_015227675.2_mRatBN7.2 GCA_015227675.2 GCF_015227675.2 True Rattus norvegicus Norway rat BN7.2 https://genome.ucsc.edu/h/GCF_015227675.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/015/227/675/GCA_015227675.2/genes/GCA_015227675.2_mRatBN7.2.augustus.gtf.gz -Rhodnius prolixus CDC INSDC GCA_000181055.3 yes 0 16537 0 Rhodnius prolixus CDC VectorBase 13249 GCA_000181055.3_Rhodnius_prolixus-3.0.3 GCA_000181055.3 False Rhodnius prolixus bugs R.prolixus (2015) https://genome.ucsc.edu/h/GCA_000181055.3 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/181/055/GCA_000181055.3/genes/GCA_000181055.3_Rhodnius_prolixus-3.0.3.augustus.gtf.gz -Rhipicephalus sanguineus Rsan-2018 INSDC GCF_013339695.2 yes 0 2316 11 Rhipicephalus sanguineus Rsan-2018 VectorBase 34632 GCF_013339695.2_BIME_Rsan_1.4 GCA_013339695.2 GCF_013339695.2 False Rhipicephalus sanguineus brown dog tick (v1.4 Rsan-2018 2022) https://genome.ucsc.edu/h/GCF_013339695.2 https://hgdownload.soe.ucsc.edu/hubs/GCF/013/339/695/GCF_013339695.2/genes/GCF_013339695.2_BIME_Rsan_1.4.ncbiRefSeq.gtf.gz -Scedosporium apiospermum IHEM 14462 GenBank GCA_000732125.1 yes 176 0 0 Scedosporium apiospermum IHEM 14462 FungiDB 563466 GCF_000732125.1_ScApio1.0 GCA_000732125.1 GCF_000732125.1 True Scedosporium apiospermum ascomycetes S.apiospermum https://genome.ucsc.edu/h/GCF_000732125.1 -Stomoxys calcitrans USDA INSDC GCA_001015335.1 yes 0 12042 0 Stomoxys calcitrans USDA VectorBase 35570 GCF_001015335.1_Stomoxys_calcitrans-1.0.1 GCA_001015335.1 GCF_001015335.1 True Stomoxys calcitrans stable fly (8C7A2A5H3J4 2015 rewfseq) https://genome.ucsc.edu/h/GCF_001015335.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/015/335/GCA_001015335.1/genes/GCA_001015335.1_Stomoxys_calcitrans-1.0.1.augustus.gtf.gz -Sabethes cyaneus ScyaPA1 INSDC GCF_943734655.1 yes 0 5 3 Sabethes cyaneus ScyaPA1 VectorBase 53552 GCF_943734655.1_idSabCyanKW18_F2 GCA_943734655.2 GCF_943734655.1 False Sabethes cyaneus mosquito S.cyaneus (primary hap 2022) https://genome.ucsc.edu/h/GCF_943734655.1 https://hgdownload.soe.ucsc.edu/hubs/GCF/943/734/655/GCF_943734655.1/genes/GCF_943734655.1_idSabCyanKW18_F2.ncbiRefSeq.gtf.gz -Synchytrium endobioticum MB42 INSDC GCA_006535955.1 yes 0 786 0 Synchytrium endobioticum MB42 FungiDB 286115 GCA_006535955.1_ASM653595v1 GCA_006535955.1 False Synchytrium endobioticum chytrids & allies (MB42 2019) https://genome.ucsc.edu/h/GCA_006535955.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/006/535/955/GCA_006535955.1/genes/GCA_006535955.1_ASM653595v1.augustus.gtf.gz -Saccharomycodes ludwigii UTAD17 INSDC GCA_900491785.1 yes 0 1360 0 Saccharomycodes ludwigii UTAD17 FungiDB 36035 GCA_900491785.1_S_ludwigii_v1 GCA_900491785.1 False Saccharomycodes ludwigii budding yeast S.ludwigii (UTAD17 2018) https://genome.ucsc.edu/h/GCA_900491785.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/491/785/GCA_900491785.1/genes/GCA_900491785.1_S_ludwigii_v1.augustus.gtf.gz -Sarcocystis neurona SN3 GenBank GCA_000727475.1 yes 701 171 0 Sarcocystis neurona SN3 ToxoDB 42890 GCA_000727475.1_ASM72747v1 GCA_000727475.1 False Sarcocystis neurona apicomplexans S.neurona (SN3 2014) https://genome.ucsc.edu/h/GCA_000727475.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/727/475/GCA_000727475.1/genes/GCA_000727475.1_ASM72747v1.augustus.gtf.gz -Sarcocystis neurona SO SN1 GenBank GCA_000875885.1 no 0 3066 0 Sarcocystis neurona SO SN1 ToxoDB 42890 GCA_000875885.1_ASM87588v1 GCA_000875885.1 False Sarcocystis neurona apicomplexans S.neurona (SN1 2015) https://genome.ucsc.edu/h/GCA_000875885.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/875/885/GCA_000875885.1/genes/GCA_000875885.1_ASM87588v1.augustus.gtf.gz -Saccharomyces paradoxus CBS432 INSDC GCA_002079055.1 yes 0 0 16 Saccharomyces paradoxus CBS432 FungiDB 27291 GCF_002079055.1_ASM207905v1 GCA_002079055.1 GCF_002079055.1 False Saccharomyces paradoxus budding yeast S.paradoxus https://genome.ucsc.edu/h/GCF_002079055.1 -Sarcoptes scabiei Arlian INSDC GCA_000828355.1 yes 0 18859 0 Sarcoptes scabiei Arlian VectorBase 52283 GCA_000828355.1_SarSca1.0 GCA_000828355.1 False Sarcoptes scabiei mite/tick S.scabiei (Arlian Lab 2015) https://genome.ucsc.edu/h/GCA_000828355.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/828/355/GCA_000828355.1/genes/GCA_000828355.1_SarSca1.0.augustus.gtf.gz -Trichoderma atroviride strain JCM 9410 INSDC GCA_001599035.1 yes 0 23 0 Trichoderma atroviride strain JCM 9410 FungiDB 63577 GCA_001599035.1_JCM_9410_assembly_v001 GCA_001599035.1 False Trichoderma atroviride ascomycetes T.atroviride (JCM 9410 2016) https://genome.ucsc.edu/h/GCA_001599035.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/599/035/GCA_001599035.1/genes/GCA_001599035.1_JCM_9410_assembly_v001.augustus.gtf.gz -Trypanosoma brucei EATRO1125 INSDC GCA_019096175.1 no 685 0 11 Trypanosoma brucei EATRO1125 TriTrypDB 5691 GCA_019096175.1_IZB_EATRO1125_Draft_genome_1.0 GCA_019096175.1 False Trypanosoma brucei Trypanosoma brucei (EATRO1125 2021) https://genome.ucsc.edu/h/GCA_019096175.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/019/096/175/GCA_019096175.1/genes/GCA_019096175.1_IZB_EATRO1125_Draft_genome_1.0.augustus.gtf.gz -Trypanosoma brucei Lister strain 427 2018 GenBank GCA_900497135.1 no 272 0 44 Trypanosoma brucei Lister strain 427 2018 TriTrypDB 5702 GCA_900497135.1_HGAP3_Tb427v9 GCA_900497135.1 False Trypanosoma brucei brucei Trypanosoma brucei brucei (2018) https://genome.ucsc.edu/h/GCA_900497135.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/497/135/GCA_900497135.1/genes/GCA_900497135.1_HGAP3_Tb427v9.augustus.gtf.gz -Trichomonascus ciferrii CBS 4856 INSDC GCA_008704605.1 yes 0 583 0 Trichomonascus ciferrii CBS 4856 FungiDB 44093 GCA_008704605.1_ASM870460v1 GCA_008704605.1 False Trichomonascus ciferrii budding yeast T.ciferrii (CBS 4856 2019) https://genome.ucsc.edu/h/GCA_008704605.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/008/704/605/GCA_008704605.1/genes/GCA_008704605.1_ASM870460v1.augustus.gtf.gz -Trypanosoma congolense IL3000 2019 GenBank GCA_003013265.1 no 364 0 11 Trypanosoma congolense IL3000 2019 TriTrypDB 1068625 GCA_003013265.1_ASM301326v1 GCA_003013265.1 False Trypanosoma congolense IL3000 Trypanosoma congolense (IL3000 2018 kinetoplastids) https://genome.ucsc.edu/h/GCA_003013265.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/013/265/GCA_003013265.1/genes/GCA_003013265.1_ASM301326v1.augustus.gtf.gz -Thelohania contejeani T1 INSDC GCA_014805555.1 yes 0 1391 0 Thelohania contejeani T1 MicrosporidiaDB 164912 GCA_014805555.1_ASM1480555v1 GCA_014805555.1 False Astathelohania contejeani microsporidians A.contejeani (T1 2020) https://genome.ucsc.edu/h/GCA_014805555.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/805/555/GCA_014805555.1/genes/GCA_014805555.1_ASM1480555v1.augustus.gtf.gz -Trypanosoma congolense Tc1/148 INSDC GCA_002287245.1 no 0 536 0 Trypanosoma congolense Tc1/148 TriTrypDB 5692 GCA_002287245.1_ASM228724v1 GCA_002287245.1 False Trypanosoma congolense Trypanosoma congolense (Tc1/148 2017) https://genome.ucsc.edu/h/GCA_002287245.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/287/245/GCA_002287245.1/genes/GCA_002287245.1_ASM228724v1.augustus.gtf.gz -Trypanosoma cruzi strain 231 GenBank GCA_900252365.1 no 8469 0 0 Trypanosoma cruzi strain 231 TriTrypDB 5693 GCA_900252365.1_TcIII_231rod GCA_900252365.1 False Trypanosoma cruzi Trypanosoma cruzi (231 2018) https://genome.ucsc.edu/h/GCA_900252365.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/252/365/GCA_900252365.1/genes/GCA_900252365.1_TcIII_231rod.augustus.gtf.gz -Trypanosoma cruzi Berenice INSDC GCA_013358655.1 no 0 923 0 Trypanosoma cruzi Berenice TriTrypDB 5693 GCA_013358655.1_ASM1335865v1 GCA_013358655.1 False Trypanosoma cruzi Trypanosoma cruzi (Berenice 2020) https://genome.ucsc.edu/h/GCA_013358655.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/013/358/655/GCA_013358655.1/genes/GCA_013358655.1_ASM1335865v1.augustus.gtf.gz -Trypanosoma cruzi Brazil A4 GenBank GCA_015033625.1 no 359 0 43 Trypanosoma cruzi Brazil A4 TriTrypDB 5693 GCA_015033625.1_ASM1503362v1 GCA_015033625.1 False Trypanosoma cruzi Trypanosoma cruzi (Brazil clone A4 2020) https://genome.ucsc.edu/h/GCA_015033625.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/015/033/625/GCA_015033625.1/genes/GCA_015033625.1_ASM1503362v1.augustus.gtf.gz -Trypanosoma cruzi Bug2148 GenBank GCA_002749415.1 no 929 0 0 Trypanosoma cruzi Bug2148 TriTrypDB 5693 GCA_002749415.1_ASM274941v1 GCA_002749415.1 False Trypanosoma cruzi Trypanosoma cruzi (Bug2148 2017) https://genome.ucsc.edu/h/GCA_002749415.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/749/415/GCA_002749415.1/genes/GCA_002749415.1_ASM274941v1.augustus.gtf.gz -Trypanosoma cruzi strain CL INSDC GCA_003719155.1 no 0 7764 0 Trypanosoma cruzi strain CL TriTrypDB 5693 GCA_003719155.1_ASM371915v1 GCA_003719155.1 False Trypanosoma cruzi Trypanosoma cruzi (CL 2018) https://genome.ucsc.edu/h/GCA_003719155.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/719/155/GCA_003719155.1/genes/GCA_003719155.1_ASM371915v1.augustus.gtf.gz -Trypanosoma cruzi Dm28c 2017 GenBank GCA_002219105.2 no 0 1029 0 Trypanosoma cruzi Dm28c 2017 TriTrypDB 85057 GCA_002219105.2_TcruziDm28cPB1 GCA_002219105.2 False Trypanosoma cruzi cruzi Trypanosoma cruzi cruzi (Dm28c 2017) https://genome.ucsc.edu/h/GCA_002219105.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/219/105/GCA_002219105.2/genes/GCA_002219105.2_TcruziDm28cPB1.augustus.gtf.gz -Trypanosoma cruzi Dm28c 2018 GenBank GCA_003177105.1 no 636 0 0 Trypanosoma cruzi Dm28c 2018 TriTrypDB 5693 GCA_003177105.1_ASM317710v1 GCA_003177105.1 False Trypanosoma cruzi Trypanosoma cruzi (Dm28c 2018) https://genome.ucsc.edu/h/GCA_003177105.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/177/105/GCA_003177105.1/genes/GCA_003177105.1_ASM317710v1.augustus.gtf.gz -Trypanosoma cruzi strain G INSDC GCA_003719455.1 no 0 1450 0 Trypanosoma cruzi strain G TriTrypDB 5693 GCA_003719455.1_ASM371945v1 GCA_003719455.1 False Trypanosoma cruzi Trypanosoma cruzi (G 2018) https://genome.ucsc.edu/h/GCA_003719455.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/719/455/GCA_003719455.1/genes/GCA_003719455.1_ASM371945v1.augustus.gtf.gz -Trypanosoma cruzi strain S11 INSDC GCA_003594385.1 no 0 7855 0 Trypanosoma cruzi strain S11 TriTrypDB 5693 GCA_003594385.1_ASM359438v1 GCA_003594385.1 False Trypanosoma cruzi Trypanosoma cruzi (S11 2018) https://genome.ucsc.edu/h/GCA_003594385.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/385/GCA_003594385.1/genes/GCA_003594385.1_ASM359438v1.augustus.gtf.gz -Trypanosoma cruzi strain S15 INSDC GCA_003594585.1 no 0 9197 0 Trypanosoma cruzi strain S15 TriTrypDB 5693 GCA_003594585.1_ASM359458v1 GCA_003594585.1 False Trypanosoma cruzi Trypanosoma cruzi (S15 2018) https://genome.ucsc.edu/h/GCA_003594585.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/585/GCA_003594585.1/genes/GCA_003594585.1_ASM359458v1.augustus.gtf.gz -Trypanosoma cruzi strain S154a INSDC GCA_003594715.1 no 0 6946 0 Trypanosoma cruzi strain S154a TriTrypDB 5693 GCA_003594715.1_ASM359471v1 GCA_003594715.1 False Trypanosoma cruzi Trypanosoma cruzi (S154a 2018) https://genome.ucsc.edu/h/GCA_003594715.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/715/GCA_003594715.1/genes/GCA_003594715.1_ASM359471v1.augustus.gtf.gz -Trypanosoma cruzi strain S162a INSDC GCA_003594605.1 no 0 8588 0 Trypanosoma cruzi strain S162a TriTrypDB 5693 GCA_003594605.1_ASM359460v1 GCA_003594605.1 False Trypanosoma cruzi Trypanosoma cruzi (S162a 2018) https://genome.ucsc.edu/h/GCA_003594605.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/605/GCA_003594605.1/genes/GCA_003594605.1_ASM359460v1.augustus.gtf.gz -Trypanosoma cruzi strain S23b INSDC GCA_003594425.1 no 0 7145 0 Trypanosoma cruzi strain S23b TriTrypDB 5693 GCA_003594425.1_ASM359442v1 GCA_003594425.1 False Trypanosoma cruzi Trypanosoma cruzi (S23b 2018) https://genome.ucsc.edu/h/GCA_003594425.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/425/GCA_003594425.1/genes/GCA_003594425.1_ASM359442v1.augustus.gtf.gz -Trypanosoma cruzi strain S44a INSDC GCA_003594705.1 no 0 4971 0 Trypanosoma cruzi strain S44a TriTrypDB 5693 GCA_003594705.1_ASM359470v1 GCA_003594705.1 False Trypanosoma cruzi Trypanosoma cruzi (S44a 2018) https://genome.ucsc.edu/h/GCA_003594705.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/705/GCA_003594705.1/genes/GCA_003594705.1_ASM359470v1.augustus.gtf.gz -Trypanosoma cruzi strain S92a INSDC GCA_003594445.1 no 0 7134 0 Trypanosoma cruzi strain S92a TriTrypDB 5693 GCA_003594445.1_ASM359444v1 GCA_003594445.1 False Trypanosoma cruzi Trypanosoma cruzi (S92a 2018) https://genome.ucsc.edu/h/GCA_003594445.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/445/GCA_003594445.1/genes/GCA_003594445.1_ASM359444v1.augustus.gtf.gz -Trypanosoma cruzi Sylvio X10/1-2012 GenBank GCA_000188675.2 no 27019 0 0 Trypanosoma cruzi Sylvio X10/1-2012 TriTrypDB 5693 GCA_000188675.2_Tc_SX10_v2.0 GCA_000188675.2 False Trypanosoma cruzi Trypanosoma cruzi (Sylvio X10/1 2012) https://genome.ucsc.edu/h/GCA_000188675.2 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/188/675/GCA_000188675.2/genes/GCA_000188675.2_Tc_SX10_v2.0.augustus.gtf.gz -Trypanosoma cruzi TCC GenBank GCA_003177095.1 no 1236 0 0 Trypanosoma cruzi TCC TriTrypDB 5693 GCA_003177095.1_TCC_diploid_1.0 GCA_003177095.1 False Trypanosoma cruzi Trypanosoma cruzi (TCC 2018) https://genome.ucsc.edu/h/GCA_003177095.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/177/095/GCA_003177095.1/genes/GCA_003177095.1_TCC_diploid_1.0.augustus.gtf.gz -Trypanosoma cruzi strain Y GenBank GCA_002749425.1 no 9821 0 0 Trypanosoma cruzi strain Y TriTrypDB 5693 GCA_002749425.1_ASM274942v1 GCA_002749425.1 False Trypanosoma cruzi Trypanosoma cruzi (Y 2017) https://genome.ucsc.edu/h/GCA_002749425.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/749/425/GCA_002749425.1/genes/GCA_002749425.1_ASM274942v1.augustus.gtf.gz -Trypanosoma cruzi Y C6 GenBank GCA_015033655.1 no 226 0 40 Trypanosoma cruzi Y C6 TriTrypDB 5693 GCA_015033655.1_ASM1503365v1 GCA_015033655.1 False Trypanosoma cruzi Trypanosoma cruzi (Y clone C6 2020) https://genome.ucsc.edu/h/GCA_015033655.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/015/033/655/GCA_015033655.1/genes/GCA_015033655.1_ASM1503365v1.augustus.gtf.gz -Trypanosoma cruzi strain Ycl2 INSDC GCA_003594485.1 no 0 6884 0 Trypanosoma cruzi strain Ycl2 TriTrypDB 5693 GCA_003594485.1_ASM359448v1 GCA_003594485.1 False Trypanosoma cruzi Trypanosoma cruzi (Ycl2 2018) https://genome.ucsc.edu/h/GCA_003594485.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/485/GCA_003594485.1/genes/GCA_003594485.1_ASM359448v1.augustus.gtf.gz -Trypanosoma cruzi strain Ycl4 INSDC GCA_003594405.1 no 0 6664 0 Trypanosoma cruzi strain Ycl4 TriTrypDB 5693 GCA_003594405.1_ASM359440v1 GCA_003594405.1 False Trypanosoma cruzi Trypanosoma cruzi (Ycl4 2018) https://genome.ucsc.edu/h/GCA_003594405.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/405/GCA_003594405.1/genes/GCA_003594405.1_ASM359440v1.augustus.gtf.gz -Trypanosoma cruzi strain Ycl6 INSDC GCA_003594465.1 no 0 6967 0 Trypanosoma cruzi strain Ycl6 TriTrypDB 5693 GCA_003594465.1_ASM359446v1 GCA_003594465.1 False Trypanosoma cruzi Trypanosoma cruzi (Ycl6 2018) https://genome.ucsc.edu/h/GCA_003594465.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/594/465/GCA_003594465.1/genes/GCA_003594465.1_ASM359446v1.augustus.gtf.gz -Trypanosoma cruzi marinkellei strain B7 GenBank GCA_000300495.1 no 0 16783 0 Trypanosoma cruzi marinkellei strain B7 TriTrypDB 85056 GCA_000300495.1_ASM30049v1 GCA_000300495.1 False Trypanosoma cruzi marinkellei Trypanosoma cruzi marinkellei (B7 2012) https://genome.ucsc.edu/h/GCA_000300495.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/300/495/GCA_000300495.1/genes/GCA_000300495.1_ASM30049v1.augustus.gtf.gz -Trypanosoma equiperdum OVI INSDC GCA_001457755.2 yes 0 2026 0 Trypanosoma equiperdum OVI TriTrypDB 5694 GCF_001457755.1_Trypanosoma_equiperdum_OVI_V2 GCA_001457755.2 GCF_001457755.1 True Trypanosoma equiperdum Trypanosoma equiperdum (OVI 2016) https://genome.ucsc.edu/h/GCF_001457755.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/457/755/GCA_001457755.2/genes/GCA_001457755.2_Trypanosoma_equiperdum_OVI_V2.augustus.gtf.gz -Trypanosoma evansi strain STIB 805 GenBank GCA_917563935.1 yes 0 0 13 Trypanosoma evansi strain STIB 805 TriTrypDB 5697 GCA_917563935.1_Assembly1 GCA_917563935.1 False Trypanosoma evansi Trypanosoma evansi (2021) https://genome.ucsc.edu/h/GCA_917563935.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/917/563/935/GCA_917563935.1/genes/GCA_917563935.1_Assembly1.augustus.gtf.gz -Toxoplasma gondii strain ME49xCTG F1 S27 INSDC GCA_014898695.1 no 0 48 0 Toxoplasma gondii strain ME49xCTG F1 S27 ToxoDB 5811 GCA_014898695.1_ASM1489869v1 GCA_014898695.1 False Toxoplasma gondii apicomplexans T.gondii (ME49xCTG S27 2020) https://genome.ucsc.edu/h/GCA_014898695.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/014/898/695/GCA_014898695.1/genes/GCA_014898695.1_ASM1489869v1.augustus.gtf.gz -Toxoplasma gondii RH 2016 GenBank GCA_001593265.1 no 441 0 0 Toxoplasma gondii RH 2016 ToxoDB 383379 GCA_001593265.1_ToxRH1.0 GCA_001593265.1 False Toxoplasma gondii RH apicomplexans T.gondii (RH 2016) https://genome.ucsc.edu/h/GCA_001593265.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/593/265/GCA_001593265.1/genes/GCA_001593265.1_ToxRH1.0.augustus.gtf.gz -Trypanosoma grayi ANR4 GenBank GCA_000691245.1 yes 2871 0 0 Trypanosoma grayi ANR4 TriTrypDB 71804 GCF_000691245.1_Tgr_V1 GCA_000691245.1 GCF_000691245.1 True Trypanosoma grayi Trypanosoma grayi (ANR4 2014 kinetoplastids) https://genome.ucsc.edu/h/GCF_000691245.1 -Trachipleistophora hominis Unknown strain GenBank GCA_000316135.1 yes 0 310 0 Trachipleistophora hominis Unknown strain MicrosporidiaDB 72359 GCA_000316135.1_ASM31613v1 GCA_000316135.1 False Trachipleistophora hominis microsporidians T.hominis (2013) https://genome.ucsc.edu/h/GCA_000316135.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/000/316/135/GCA_000316135.1/genes/GCA_000316135.1_ASM31613v1.augustus.gtf.gz -Triatoma infestans isolate FIOC_28 INSDC GCA_011037195.1 yes 0 14951 0 Triatoma infestans isolate FIOC_28 VectorBase 30076 GCA_011037195.1_UVM_Tinf_1.0 GCA_011037195.1 False Triatoma infestans bugs T.infestans (FIOC_28 2020) https://genome.ucsc.edu/h/GCA_011037195.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/011/037/195/GCA_011037195.1/genes/GCA_011037195.1_UVM_Tinf_1.0.augustus.gtf.gz -Talaromyces marneffei TM4 INSDC GCA_003971505.1 no 0 0 8 Talaromyces marneffei TM4 FungiDB 37727 GCA_003971505.1_ASM397150v1 GCA_003971505.1 False Talaromyces marneffei ascomycetes T.marneffei (TM4 2018) https://genome.ucsc.edu/h/GCA_003971505.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/971/505/GCA_003971505.1/genes/GCA_003971505.1_ASM397150v1.augustus.gtf.gz -Trypanosoma melophagium St. Kilda INSDC GCA_022059095.1 yes 0 64 0 Trypanosoma melophagium St. Kilda TriTrypDB 715481 GCF_022059095.1_T.mel.1 GCA_022059095.1 GCF_022059095.1 True Trypanosoma melophagium Trypanosoma melophagium (St. Kilda St. Kilda 2022 refseq) https://genome.ucsc.edu/h/GCF_022059095.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/022/059/095/GCA_022059095.1/genes/GCA_022059095.1_T.mel.1.augustus.gtf.gz -Trichophyton mentagrophytes TIMM 2789 INSDC GCA_003118255.1 yes 0 16543 0 Trichophyton mentagrophytes TIMM 2789 FungiDB 523103 GCA_003118255.1_ABySS_70bp_45k_152cov_v1 GCA_003118255.1 False Trichophyton mentagrophytes ascomycetes T.mentagrophytes (TIMM 2789 2018) https://genome.ucsc.edu/h/GCA_003118255.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/003/118/255/GCA_003118255.1/genes/GCA_003118255.1_ABySS_70bp_45k_152cov_v1.augustus.gtf.gz -Tubulinosema ratisbonensis Franzen INSDC GCA_004000155.1 yes 0 952 0 Tubulinosema ratisbonensis Franzen MicrosporidiaDB 291195 GCA_004000155.1_ASM400015v1 GCA_004000155.1 False Tubulinosema ratisbonensis microsporidians T.ratisbonensis (Franzen 2019) https://genome.ucsc.edu/h/GCA_004000155.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/004/000/155/GCA_004000155.1/genes/GCA_004000155.1_ASM400015v1.augustus.gtf.gz -Trichoderma reesei QM6a 2017 INSDC GCA_002006585.1 no 0 0 7 Trichoderma reesei QM6a 2017 FungiDB 431241 GCA_002006585.1_ASM200658v1 GCA_002006585.1 False Trichoderma reesei QM6a ascomycetes T.reesei (QM6a 2017) https://genome.ucsc.edu/h/GCA_002006585.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/002/006/585/GCA_002006585.1/genes/GCA_002006585.1_ASM200658v1.augustus.gtf.gz -Trichomonas tenax strain NIH4 ATCC 30207 INSDC GCA_900231805.1 yes 0 4161 0 Trichomonas tenax strain NIH4 ATCC 30207 TrichDB 43075 GCA_900231805.1_PRJEB22701 GCA_900231805.1 False Trichomonas tenax trichomonads (NIH4 ATCC 30207 2019) https://genome.ucsc.edu/h/GCA_900231805.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/900/231/805/GCA_900231805.1/genes/GCA_900231805.1_PRJEB22701.augustus.gtf.gz -Trypanosoma theileri isolate Edinburgh GenBank GCA_002087225.1 yes 253 0 0 Trypanosoma theileri isolate Edinburgh TriTrypDB 67003 GCF_002087225.1_Tth_v3 GCA_002087225.1 GCF_002087225.1 True Trypanosoma theileri Trypanosoma theileri (Edinburgh 2017 kinetoplastids) https://genome.ucsc.edu/h/GCF_002087225.1 -Trichomonas vaginalis G3 2022 INSDC GCA_026262505.1 yes 0 212 6 Trichomonas vaginalis G3 2022 TrichDB 412133 GCF_026262505.1_NYU_TvagG3_2 GCA_026262505.1 GCF_026262505.1 True Trichomonas vaginalis G3 Trichomonas vaginalis (G3 2022) https://genome.ucsc.edu/h/GCF_026262505.1 -Verruconis gallopava strain CBS 43764 INSDC GCA_000836295.1 yes 0 367 0 Verruconis gallopava strain CBS 43764 FungiDB 253628 GCF_000836295.1_O_gall_CBS43764 GCA_000836295.1 GCF_000836295.1 True Verruconis gallopava ascomycetes V.gallopava https://genome.ucsc.edu/h/GCF_000836295.1 -Xylaria arbuscula CBS 124340 INSDC GCA_022385695.1 yes 0 89 0 Xylaria arbuscula CBS 124340 FungiDB 114810 GCA_022385695.1_Xylarb124340_1 GCA_022385695.1 False Xylaria arbuscula ascomycetes X.arbuscula (CBS 124340 2022) https://genome.ucsc.edu/h/GCA_022385695.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/022/385/695/GCA_022385695.1/genes/GCA_022385695.1_Xylarb124340_1.augustus.gtf.gz -Yarrowia lipolytica CLIB89 (W29) GenBank GCA_001761485.1 no 0 0 6 Yarrowia lipolytica CLIB89 (W29) FungiDB 4952 GCA_001761485.1_ASM176148v1 GCA_001761485.1 GCF_001761485.1 False Yarrowia lipolytica budding yeast Y.lipolytica (CLIB89W29 2016) https://genome.ucsc.edu/h/GCA_001761485.1 https://hgdownload.soe.ucsc.edu/hubs/GCA/001/761/485/GCA_001761485.1/genes/GCA_001761485.1_ASM176148v1.augustus.gtf.gz diff --git a/package.json b/package.json index ad9ebd1..8d49929 100644 --- a/package.json +++ b/package.json @@ -11,7 +11,7 @@ "format": "prettier --write . --cache", "prepare": "husky", "test": "jest --runInBand", - "build-brc-db": "esrun files/build-catalog.ts" + "build-brc-db": "esrun catalog-build/build-catalog.ts" }, "dependencies": { "@databiosphere/findable-ui": "^21.0.0", diff --git a/site-config/brc-analytics/local/index/genomeEntityConfig.ts b/site-config/brc-analytics/local/index/genomeEntityConfig.ts index 37a1de2..37bf305 100644 --- a/site-config/brc-analytics/local/index/genomeEntityConfig.ts +++ b/site-config/brc-analytics/local/index/genomeEntityConfig.ts @@ -241,5 +241,5 @@ export const genomeEntityConfig: BRCEntityConfig = { enableTab: false, }, route: "assemblies", - staticLoadFile: "files/out/genomes.json", + staticLoadFile: "catalog/genomes.json", }; diff --git a/site-config/brc-analytics/local/index/organismEntityConfig.ts b/site-config/brc-analytics/local/index/organismEntityConfig.ts index b8ade27..ce81c51 100644 --- a/site-config/brc-analytics/local/index/organismEntityConfig.ts +++ b/site-config/brc-analytics/local/index/organismEntityConfig.ts @@ -101,5 +101,5 @@ export const organismEntityConfig: BRCEntityConfig = { enableTab: false, }, route: "organisms", - staticLoadFile: "files/out/organisms.json", + staticLoadFile: "catalog/organisms.json", };