From 5faafc991641308cd18e69c2778fcf820e772858 Mon Sep 17 00:00:00 2001 From: Steven Weaver Date: Wed, 11 Sep 2024 11:34:50 -0700 Subject: [PATCH] VeuPathDb -> VEuPathDB --- .../SectionHelp/components/Questions/questions.tsx | 8 ++++---- .../Section/components/SectionHero/sectionHero.tsx | 2 +- .../Section/components/SectionRoadmap/sectionRoadmap.tsx | 4 ++-- .../brc-analytics-catalog/common/viewModelBuilders.ts | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-) diff --git a/app/components/Home/components/Section/components/SectionHelp/components/Questions/questions.tsx b/app/components/Home/components/Section/components/SectionHelp/components/Questions/questions.tsx index 2d6022f..2ed62e5 100644 --- a/app/components/Home/components/Section/components/SectionHelp/components/Questions/questions.tsx +++ b/app/components/Home/components/Section/components/SectionHelp/components/Questions/questions.tsx @@ -18,11 +18,11 @@ export const Questions = (): JSX.Element => { BRC-Analytics is very new. Out plan is (1) establish access to - official versions of VeuPathDb’s 785 genomes; (2) develop analytical + official versions of VEuPathDB’s 785 genomes; (2) develop analytical workflows for common analyses such as transcriptomics, variation, assembly, and tightly integrate them with the data; (3) ingest and provide access to custom annotations that were previously available - from VeuPathDb. To learn more click “Roadmap” on top. + from VEuPathDB. To learn more click “Roadmap” on top. @@ -32,7 +32,7 @@ export const Questions = (): JSX.Element => { I used to be able to access many types of data including genomes and associated annotations. Where do I find it now? Data for the majority - of VeuPathDb organisms is available by clicking the “Datasets” link at + of VEuPathDB organisms is available by clicking the “Datasets” link at the top. @@ -41,7 +41,7 @@ export const Questions = (): JSX.Element => { How do I do analyses? - I used to rely on VeuPathDb to perform my analyses. Now that it is no + I used to rely on VEuPathDB to perform my analyses. Now that it is no longer available, what can I do? Many types of analyses are possible via integration with the{" "} while we diff --git a/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx b/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx index 74daa45..b1cda6c 100644 --- a/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx +++ b/app/components/Home/components/Section/components/SectionHero/sectionHero.tsx @@ -29,7 +29,7 @@ export const SectionHero = (): JSX.Element => { BRC Analytics is under active development. This site will provide data access and analytical tools for all 785 eukaryotic pathogens, host taxa, and vectors previously served by - VeuPathDb. However, we cannot do this alone. + VEuPathDB. However, we cannot do this alone. Use the button below to tell us about your usage patterns and diff --git a/app/components/Roadmap/components/Section/components/SectionRoadmap/sectionRoadmap.tsx b/app/components/Roadmap/components/Section/components/SectionRoadmap/sectionRoadmap.tsx index 4abbb4b..1c3e972 100644 --- a/app/components/Roadmap/components/Section/components/SectionRoadmap/sectionRoadmap.tsx +++ b/app/components/Roadmap/components/Section/components/SectionRoadmap/sectionRoadmap.tsx @@ -25,7 +25,7 @@ export const SectionRoadmap = (): JSX.Element => { Develop data component Data harmonization and ingest - The list of all 785 genomes originally found in VeuPathDb will be + The list of all 785 genomes originally found in VEuPathDB will be harmonized. This means that for each genome, we will identify the latest official release listed at NCBI. The data will then be ingested by the UCSC Genome Browser team to create a browser @@ -40,7 +40,7 @@ export const SectionRoadmap = (): JSX.Element => { A search component allowing users to perform custom queries on all data will be developed. It will allow functionality that was - previously provided by VeuPathDb’s “search strategy” component.{" "} + previously provided by VEuPathDB’s “search strategy” component.{" "} diff --git a/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts b/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts index 32c3a39..4911950 100644 --- a/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts +++ b/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts @@ -161,7 +161,7 @@ export const buildOrganismListHero = (): ComponentProps< > => { return { children: - "If you do not see your organism in this list: it will be there! We are in the process of ingesting sequences and annotations for all 785 taxa from VEuPathDb. The table below is generated by comparing the list maintained by VeuPathDb against official NCBI genome builds. The three buttons adjacent to each taxon direct you to a page listing available analytical workflows as well as direct links to genomic data (NCBI Datasets) and a genome browser (UCSC). A comprehensive search functionality will be developed to allow complex queries.", + "If you do not see your organism in this list: it will be there! We are in the process of ingesting sequences and annotations for all 785 taxa from VEuPathDb. The table below is generated by comparing the list maintained by VEuPathDB against official NCBI genome builds. The three buttons adjacent to each taxon direct you to a page listing available analytical workflows as well as direct links to genomic data (NCBI Datasets) and a genome browser (UCSC). A comprehensive search functionality will be developed to allow complex queries.", severity: "warning", }; };