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Consider more advanced views into the alignments in Template #207

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clintval opened this issue Dec 30, 2024 · 0 comments

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clintval commented Dec 30, 2024 •

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After fixing an issue in Template where records were added twice to different internal fields in this PR:

Template to treat 'secondary supplemental' as supplemental #203

We might want to consider more specific "views" into the different categories of alignments for multi-mapping chimeric use cases.

Some ideas for useful ways to view the alignments for either the R1 or R2 ordinal:

Only primary (not secondary, not supplemental)
Only not primary (all secondary and supplementary)
Only secondary including "secondary supplementals"
Only secondary not including "secondary supplementals"
Only supplementary including "secondary supplementals"
Only supplementary not including "secondary supplementals"

The text was updated successfully, but these errors were encountered:

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