pythonpackage.yml

name: Nanonet tests
on: [push]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.8]

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v1
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        sudo apt-get update
        sudo apt-get install libopenmpi-dev
        python -m pip install --upgrade pip
        pip install python-coveralls
        pip install coverage==4.5.4
        pip install -r requirements.txt
    - name: Extract tag name
      id: tag
      run: echo "tag=${GITHUB_REF#refs/*/}" >> $GITHUB_OUTPUT
    - name: Update version in setup.py
      run: >-
        sed -i "s/{{VERSION_PLACEHOLDER}}/${{ steps.vars.outputs.tag }}/g" setup.py; cat setup.py
    - name: Install Nanonet
      run: |
        pip install .
    - name: Test with nose
      run: |
        nosetests
    - name: Run tests and collect coverage
      run: |
         pip install pytest pytest-cov
         pytest --cov --cov-report=xml
    - name: Upload coverage reports to Codecov
      uses: codecov/codecov-action@v3
      env:
        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}