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Not able to install detonate ? (make error) #4

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sunnyEV opened this issue Jan 8, 2020 · 2 comments
Open

Not able to install detonate ? (make error) #4

sunnyEV opened this issue Jan 8, 2020 · 2 comments

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@sunnyEV
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sunnyEV commented Jan 8, 2020

not able to install, need suggestions!
Last few lines of make
make[1]: Leaving directory '/home/lip/soft4/evaluation/detonate-1.8.1/ref-eval'

============================================
= Building RSEM-EVAL and its dependencies. =

cd rsem-eval && make && touch finished
make[1]: Entering directory '/home/lip/soft4/evaluation/detonate-1.8.1/rsem-eval'
g++ -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts
g++ -Wall -O3 synthesisRef.cpp -o rsem-synthesis-reference-transcripts
g++ -Wall -O3 -ffast-math -c -I. preRef.cpp
g++ preRef.o -o rsem-preref
g++ -Wall -O2 -c -I. parseIt.cpp
In file included from parseIt.cpp:22:0:
SingleHit.h: In member function ‘bool SingleHit::read(std::istream&)’:
SingleHit.h:46:22: error: cannot convert ‘std::basic_istream::__istream_type {aka std::basic_istream}’ to ‘bool’ in return
return (in>>sid>>pos);
^
In file included from parseIt.cpp:23:0:
PairedEndHit.h: In member function ‘bool PairedEndHit::read(std::istream&)’:
PairedEndHit.h:29:34: error: cannot convert ‘std::basic_istream::__istream_type {aka std::basic_istream}’ to ‘bool’ in return
return (in>>sid>>pos>>insertL);
^
Makefile:56: recipe for target 'parseIt.o' failed
make[1]: *** [parseIt.o] Error 1
make[1]: Leaving directory '/home/lip/soft4/evaluation/detonate-1.8.1/rsem-eval'
Makefile:13: recipe for target 'rsem-eval/finished' failed
make: *** [rsem-eval/finished] Error 2

@j-b-o
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j-b-o commented Jun 18, 2020

Same error here, with g++ (Ubuntu 9.3.0-10ubuntu2) 9.3.0.

Do you know what version works? Are there any developments on this issue?

@sschrstn
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Hi, are there any updates on this issue?

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