diff --git a/metadata-ingestion-modules/airflow-plugin/pyproject.toml b/metadata-ingestion-modules/airflow-plugin/pyproject.toml
index 1fdd56ff1792a..41bd14d9b1b85 100644
--- a/metadata-ingestion-modules/airflow-plugin/pyproject.toml
+++ b/metadata-ingestion-modules/airflow-plugin/pyproject.toml
@@ -5,6 +5,12 @@ requires = ["setuptools>=54.0.0", "wheel", "pip>=21.0.0"]
 [tool.ruff]
 line-length = 88
 target-version = "py38"
+exclude = [
+    ".git",
+    "venv",
+    ".tox",
+    "__pycache__",
+]
 
 [tool.ruff.format]
 quote-style = "double"
diff --git a/metadata-ingestion-modules/dagster-plugin/pyproject.toml b/metadata-ingestion-modules/dagster-plugin/pyproject.toml
index 39d780a2c1254..41bd14d9b1b85 100644
--- a/metadata-ingestion-modules/dagster-plugin/pyproject.toml
+++ b/metadata-ingestion-modules/dagster-plugin/pyproject.toml
@@ -3,8 +3,14 @@ build-backend = "setuptools.build_meta"
 requires = ["setuptools>=54.0.0", "wheel", "pip>=21.0.0"]
 
 [tool.ruff]
-target-version = "py38"
 line-length = 88
+target-version = "py38"
+exclude = [
+    ".git",
+    "venv",
+    ".tox",
+    "__pycache__",
+]
 
 [tool.ruff.format]
 quote-style = "double"
diff --git a/metadata-ingestion-modules/gx-plugin/pyproject.toml b/metadata-ingestion-modules/gx-plugin/pyproject.toml
index 7e227edc4b196..41bd14d9b1b85 100644
--- a/metadata-ingestion-modules/gx-plugin/pyproject.toml
+++ b/metadata-ingestion-modules/gx-plugin/pyproject.toml
@@ -5,6 +5,12 @@ requires = ["setuptools>=54.0.0", "wheel", "pip>=21.0.0"]
 [tool.ruff]
 line-length = 88
 target-version = "py38"
+exclude = [
+    ".git",
+    "venv",
+    ".tox",
+    "__pycache__",
+]
 
 [tool.ruff.format]
 quote-style = "double"
@@ -48,7 +54,6 @@ ignore = [
 max-complexity = 15
 
 [tool.ruff.lint.flake8-tidy-imports]
-# Disallow all relative imports.
 ban-relative-imports = "all"
 
 [tool.ruff.lint.per-file-ignores]
diff --git a/metadata-ingestion-modules/prefect-plugin/pyproject.toml b/metadata-ingestion-modules/prefect-plugin/pyproject.toml
index 1fdd56ff1792a..41bd14d9b1b85 100644
--- a/metadata-ingestion-modules/prefect-plugin/pyproject.toml
+++ b/metadata-ingestion-modules/prefect-plugin/pyproject.toml
@@ -5,6 +5,12 @@ requires = ["setuptools>=54.0.0", "wheel", "pip>=21.0.0"]
 [tool.ruff]
 line-length = 88
 target-version = "py38"
+exclude = [
+    ".git",
+    "venv",
+    ".tox",
+    "__pycache__",
+]
 
 [tool.ruff.format]
 quote-style = "double"
diff --git a/metadata-ingestion/pyproject.toml b/metadata-ingestion/pyproject.toml
index f489facde4d50..7378b60d60a81 100644
--- a/metadata-ingestion/pyproject.toml
+++ b/metadata-ingestion/pyproject.toml
@@ -4,10 +4,9 @@ requires = ["setuptools>=63.0.0", "wheel"]
 
 [tool.ruff]
 line-length = 88
-# Exclude directories matching these patterns
+target-version = "py38"
 exclude = [
     ".git",
-    "src/datahub/metadata",
     "venv",
     ".tox",
     "__pycache__",
@@ -19,6 +18,23 @@ indent-style = "space"
 skip-magic-trailing-comma = false
 line-ending = "auto"
 
+[tool.ruff.lint.isort]
+combine-as-imports = true
+known-first-party = ["datahub"]
+extra-standard-library = ["__future__", "datahub.utilities._markupsafe_compat", "datahub.sql_parsing._sqlglot_patch"]
+section-order = ["future", "standard-library", "third-party", "first-party", "local-folder"]
+force-sort-within-sections = false
+force-wrap-aliases = false
+split-on-trailing-comma = false
+order-by-type = true
+relative-imports-order = "closest-to-furthest"
+force-single-line = false
+single-line-exclusions = ["typing"]
+length-sort = false
+from-first = false
+required-imports = []
+classes = ["typing"]
+
 [tool.ruff.lint]
 select = [
     "B",    # flake8-bugbear
@@ -29,14 +45,10 @@ select = [
     "TID",  # flake8-tidy-imports
 ]
 ignore = [
-    # Ignore line length violations (handled by formatter)
-    "E501",
-    # Ignore whitespace before ':' (matches Black)
-    "E203",
-    # Allow usages of functools.lru_cache
-    "B019",
-    # Allow function call in argument defaults
-    "B008",
+    "E501",  # Line length violations (handled by formatter)
+    "E203",  # Ignore whitespace before ':' (matches Black)
+    "B019",  # Allow usages of functools.lru_cache
+    "B008",  # Allow function call in argument defaults
     # TODO: Enable these later
     "B006",  # Mutable args
     "B017",  # Do not assert blind exception
@@ -46,23 +58,6 @@ ignore = [
 [tool.ruff.lint.mccabe]
 max-complexity = 20
 
-[tool.ruff.lint.isort]
-combine-as-imports = true
-known-first-party = ["datahub"]
-extra-standard-library = ["__future__", "datahub.utilities._markupsafe_compat", "datahub.sql_parsing._sqlglot_patch"]
-section-order = ["future", "standard-library", "third-party", "first-party", "local-folder"]
-force-sort-within-sections = false
-force-wrap-aliases = false
-split-on-trailing-comma = false
-order-by-type = true
-relative-imports-order = "closest-to-furthest"
-force-single-line = false
-single-line-exclusions = ["typing"]
-length-sort = false
-from-first = false
-required-imports = []
-classes = ["typing"]
-
 [tool.ruff.lint.flake8-tidy-imports]
 ban-relative-imports = "all"