From f37e6046c75864beb0d8d63fe546ee4360c0e04b Mon Sep 17 00:00:00 2001
From: Acribbs <a.p.cribbs@gmail.com>
Date: Fri, 29 Nov 2024 20:32:56 +0000
Subject: [PATCH] updated setup

---
 pyproject.toml | 2 +-
 setup.py       | 8 ++++++++
 2 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 55a2c5f5..9c6b68de 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -41,7 +41,7 @@ include-package-data = true
 cgat = "cgat.cgat:main"
 
 [tool.setuptools.package-data]
-cgat = ["*.txt", "*.yaml", "*.yml"]
+cgat = ["*.txt", "*.yaml", "*.yml", "*.h"]
 
 [project.urls]
 Source = "https://github.com/cgat-developers/cgat-apps/"
diff --git a/setup.py b/setup.py
index badc5264..69860d85 100644
--- a/setup.py
+++ b/setup.py
@@ -124,9 +124,17 @@
     packages=cgat_packages,
     package_dir=cgat_package_dirs,
     include_package_data=True,
+    package_data={
+        "cgat.Components": ["*.h"],
+    },
     ext_modules=extensions,
     cmdclass={'build_ext': build_ext},
     zip_safe=False,
+    install_requires=[
+        "Cython>=0.29.35",
+        "numpy",
+        "pysam",
+    ],
     entry_points={
         'console_scripts': [
             'cgat = cgat.cgat.main',