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new metric: compute the overlap of genuine peptide IDs between neighbouring fractions (since this is used by MaxQuant for alignment). If the overlap is sparse, the alignment cannot be reliably calculated (which should also be apparent in the MBR metrics). In this case it might be better to use distant fractions for the affected files in order to to avoid potential false positives by MaxQuant"s MBR
The text was updated successfully, but these errors were encountered:
cbielow
changed the title
[IDEA]
[IDEA] ID overlap of fractions
Apr 19, 2017
new metric: compute the overlap of genuine peptide IDs between neighbouring fractions (since this is used by MaxQuant for alignment). If the overlap is sparse, the alignment cannot be reliably calculated (which should also be apparent in the MBR metrics). In this case it might be better to use distant fractions for the affected files in order to to avoid potential false positives by MaxQuant"s MBR
The text was updated successfully, but these errors were encountered: