test_pyopenms.yml

name: Test pyOpenMS on different platforms

on:
  workflow_dispatch: # Trigger manually
  workflow_run: # Trigger on pyopenms-wheels
    workflows: ["pyopenms-wheels-and-packages"]
    types:
      - completed

jobs:
  read-python-versions:
    if: ${{ github.event.workflow_run.conclusion == 'success' || github.event_name == 'workflow_dispatch'}}
    runs-on: ubuntu-latest
    outputs:
      matrix: ${{ steps.python_versions.outputs.content }}
    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Read python_versions.json
        id: python_versions
        uses: juliangruber/read-file-action@v1.1.7
        with:
          path: .github/workflows/python_versions.json

      - name: Echo python_versions.json
        run: echo "${{ steps.python_versions.outputs.content }}"

  test:
    needs: read-python-versions
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ ubuntu-latest, windows-latest, macos-latest ]
        python-version: ${{ fromJson(needs.read-python-versions.outputs.matrix) }}
    steps:
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install --index-url https://pypi.cs.uni-tuebingen.de/simple/ pyopenms

      - name: Run tests
        run: |
          python -c "import sys;
          import pyopenms;
          print(sys.version);
          seq = pyopenms.AASequence.fromString('DFPIANGER');
          print(seq.toString());
          seq.getMonoWeight()"