From 9e423473d046f596fc3372ede60a49f037142041 Mon Sep 17 00:00:00 2001 From: zkamvar Date: Tue, 7 Nov 2023 00:39:52 +0000 Subject: [PATCH] [actions] update 32 packages --- renv/activate.R | 27 +--- renv/profiles/lesson-requirements/renv.lock | 133 ++++++++++---------- 2 files changed, 71 insertions(+), 89 deletions(-) diff --git a/renv/activate.R b/renv/activate.R index 2969c7324..cb5401f93 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -2,7 +2,7 @@ local({ # the requested version of renv - version <- "1.0.2" + version <- "1.0.3" attr(version, "sha") <- NULL # the project directory @@ -1034,19 +1034,6 @@ local({ } - - renv_bootstrap_in_rstudio <- function() { - commandArgs()[[1]] == "RStudio" - } - - # Used to work around buglet in RStudio if hook uses readline - renv_bootstrap_flush_console <- function() { - tryCatch({ - tools <- as.environment("tools:rstudio") - tools$.rs.api.sendToConsole("", echo = FALSE, focus = FALSE) - }, error = function(cnd) {}) - } - renv_json_read <- function(file = NULL, text = NULL) { jlerr <- NULL @@ -1185,16 +1172,8 @@ local({ # construct full libpath libpath <- file.path(root, prefix) - if (renv_bootstrap_in_rstudio()) { - # RStudio only updates console once .Rprofile is finished, so - # instead run code on sessionInit - setHook("rstudio.sessionInit", function(...) { - renv_bootstrap_exec(project, libpath, version) - renv_bootstrap_flush_console() - }) - } else { - renv_bootstrap_exec(project, libpath, version) - } + # run bootstrap code + renv_bootstrap_exec(project, libpath, version) invisible() diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock index 66961fc92..a02ec85c3 100644 --- a/renv/profiles/lesson-requirements/renv.lock +++ b/renv/profiles/lesson-requirements/renv.lock @@ -115,7 +115,7 @@ }, "GenomeInfoDb": { "Package": "GenomeInfoDb", - "Version": "1.36.2", + "Version": "1.36.4", "Source": "Bioconductor", "Requirements": [ "BiocGenerics", @@ -129,7 +129,7 @@ "stats4", "utils" ], - "Hash": "94cae1161cc7a68e9e28a2a4994beb72" + "Hash": "1c6756527d78e8135d34662d2e1d54ec" }, "GenomeInfoDbData": { "Package": "GenomeInfoDbData", @@ -142,7 +142,7 @@ }, "GenomicRanges": { "Package": "GenomicRanges", - "Version": "1.52.0", + "Version": "1.52.1", "Source": "Bioconductor", "Requirements": [ "BiocGenerics", @@ -156,7 +156,7 @@ "stats4", "utils" ], - "Hash": "dc2970e434666341650a7983435597bf" + "Hash": "c9471497a07953ded9b8889879c079e9" }, "IRanges": { "Package": "IRanges", @@ -190,7 +190,7 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.6-1", + "Version": "1.6-1.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -203,7 +203,7 @@ "stats", "utils" ], - "Hash": "cb6855ac711958ca734b75e631b2035d" + "Hash": "1a00d4828f33a9d690806e98bd17150c" }, "MatrixGenerics": { "Package": "MatrixGenerics", @@ -237,7 +237,7 @@ }, "RCurl": { "Package": "RCurl", - "Version": "1.98-1.12", + "Version": "1.98-1.13", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -245,7 +245,7 @@ "bitops", "methods" ], - "Hash": "1d6ed2d006d483f31c6d5531f3a39923" + "Hash": "318c7b8d68358b45cbc6115dda23d7db" }, "Rcpp": { "Package": "Rcpp", @@ -277,7 +277,7 @@ }, "S4Vectors": { "Package": "S4Vectors", - "Version": "0.38.1", + "Version": "0.38.2", "Source": "Bioconductor", "Requirements": [ "BiocGenerics", @@ -287,7 +287,7 @@ "stats4", "utils" ], - "Hash": "f0a46e23a2a7d6aa27e945faf7f242c7" + "Hash": "338207894998073e7823706f886a1386" }, "SummarizedExperiment": { "Package": "SummarizedExperiment", @@ -575,13 +575,13 @@ }, "curl": { "Package": "curl", - "Version": "5.0.2", + "Version": "5.1.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R" ], - "Hash": "511bacbfa153a15251166b463b4da4f9" + "Hash": "9123f3ef96a2c1a93927d828b2fe7d4c" }, "data.table": { "Package": "data.table", @@ -596,7 +596,7 @@ }, "dbplyr": { "Package": "dbplyr", - "Version": "2.3.3", + "Version": "2.4.0", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -620,7 +620,7 @@ "vctrs", "withr" ], - "Hash": "d6fd1b1440c1cacc6623aaa4e9fe352b" + "Hash": "59351f28a81f0742720b85363c4fdd61" }, "digest": { "Package": "digest", @@ -688,26 +688,26 @@ }, "evaluate": { "Package": "evaluate", - "Version": "0.21", + "Version": "0.23", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "methods" ], - "Hash": "d59f3b464e8da1aef82dc04b588b8dfb" + "Hash": "daf4a1246be12c1fa8c7705a0935c1a0" }, "fansi": { "Package": "fansi", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", - "Repository": "RSPM", + "Repository": "CRAN", "Requirements": [ "R", "grDevices", "utils" ], - "Hash": "1d9e7ad3c8312a192dea7d3db0274fde" + "Hash": "3e8583a60163b4bc1a80016e63b9959e" }, "farver": { "Package": "farver", @@ -797,9 +797,9 @@ }, "ggplot2": { "Package": "ggplot2", - "Version": "3.4.3", + "Version": "3.4.4", "Source": "Repository", - "Repository": "RSPM", + "Repository": "CRAN", "Requirements": [ "MASS", "R", @@ -818,7 +818,7 @@ "vctrs", "withr" ], - "Hash": "85846544c596e71f8f46483ab165da33" + "Hash": "313d31eff2274ecf4c1d3581db7241f9" }, "glue": { "Package": "glue", @@ -978,7 +978,7 @@ }, "htmltools": { "Package": "htmltools", - "Version": "0.5.6", + "Version": "0.5.7", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -991,7 +991,7 @@ "rlang", "utils" ], - "Hash": "a2326a66919a3311f7fbb1e3bf568283" + "Hash": "2d7b3857980e0e0d0a1fd6f11928ab0f" }, "htmlwidgets": { "Package": "htmlwidgets", @@ -1067,7 +1067,7 @@ }, "knitr": { "Package": "knitr", - "Version": "1.43", + "Version": "1.45", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1079,7 +1079,7 @@ "xfun", "yaml" ], - "Hash": "9775eb076713f627c07ce41d8199d8f6" + "Hash": "1ec462871063897135c1bcbe0fc8f07d" }, "labeling": { "Package": "labeling", @@ -1105,7 +1105,7 @@ }, "lattice": { "Package": "lattice", - "Version": "0.21-8", + "Version": "0.22-5", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1116,7 +1116,7 @@ "stats", "utils" ], - "Hash": "0b8a6d63c8770f02a8b5635f3c431e6b" + "Hash": "7c5e89f04e72d6611c77451f6331a091" }, "lazyeval": { "Package": "lazyeval", @@ -1143,7 +1143,7 @@ }, "lubridate": { "Package": "lubridate", - "Version": "1.9.2", + "Version": "1.9.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1152,7 +1152,7 @@ "methods", "timechange" ], - "Hash": "e25f18436e3efd42c7c590a1c4c15390" + "Hash": "680ad542fbcf801442c83a6ac5a2126c" }, "magrittr": { "Package": "magrittr", @@ -1257,13 +1257,13 @@ }, "openssl": { "Package": "openssl", - "Version": "2.1.0", + "Version": "2.1.1", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "askpass" ], - "Hash": "273a6bb4a9844c296a459d2176673270" + "Hash": "2a0dc8c6adfb6f032e4d4af82d258ab5" }, "patchwork": { "Package": "patchwork", @@ -1312,7 +1312,7 @@ }, "plotly": { "Package": "plotly", - "Version": "4.10.2", + "Version": "4.10.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1340,14 +1340,17 @@ "vctrs", "viridisLite" ], - "Hash": "6c00a09ba7d34917d9a3e28b15dd74e3" + "Hash": "56914cc61df53f2d0283d5498680867e" }, "prettyunits": { "Package": "prettyunits", - "Version": "1.1.1", + "Version": "1.2.0", "Source": "Repository", "Repository": "CRAN", - "Hash": "95ef9167b75dde9d2ccc3c7528393e7e" + "Requirements": [ + "R" + ], + "Hash": "6b01fc98b1e86c4f705ce9dcfd2f57c7" }, "processx": { "Package": "processx", @@ -1419,14 +1422,14 @@ }, "ragg": { "Package": "ragg", - "Version": "1.2.5", + "Version": "1.2.6", "Source": "Repository", - "Repository": "CRAN", + "Repository": "https://carpentries.r-universe.dev", "Requirements": [ "systemfonts", "textshaping" ], - "Hash": "690bc058ea2b1b8a407d3cfe3dce3ef9" + "Hash": "6ba2fa8740abdc2cc148407836509901" }, "rappdirs": { "Package": "rappdirs", @@ -1495,13 +1498,13 @@ }, "renv": { "Package": "renv", - "Version": "1.0.2", + "Version": "1.0.3", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "utils" ], - "Hash": "4b22ac016fe54028b88d0c68badbd061" + "Hash": "41b847654f567341725473431dd0d5ab" }, "reprex": { "Package": "reprex", @@ -1527,18 +1530,18 @@ }, "rlang": { "Package": "rlang", - "Version": "1.1.1", + "Version": "1.1.2", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "R", "utils" ], - "Hash": "a85c767b55f0bf9b7ad16c6d7baee5bb" + "Hash": "50a6dbdc522936ca35afc5e2082ea91b" }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.24", + "Version": "2.25", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1558,7 +1561,7 @@ "xfun", "yaml" ], - "Hash": "3854c37590717c08c32ec8542a2e0a35" + "Hash": "d65e35823c817f09f4de424fcdfa812a" }, "rstudioapi": { "Package": "rstudioapi", @@ -1671,26 +1674,26 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", - "Repository": "RSPM", + "Repository": "https://carpentries.r-universe.dev", "Requirements": [ "R", "cpp11" ], - "Hash": "90b28393209827327de889f49935140a" + "Hash": "15b594369e70b975ba9f064295983499" }, "textshaping": { "Package": "textshaping", - "Version": "0.3.6", + "Version": "0.3.7", "Source": "Repository", - "Repository": "RSPM", + "Repository": "https://carpentries.r-universe.dev", "Requirements": [ "R", "cpp11", "systemfonts" ], - "Hash": "1ab6223d3670fac7143202cb6a2d43d5" + "Hash": "997aac9ad649e0ef3b97f96cddd5622b" }, "tibble": { "Package": "tibble", @@ -1832,13 +1835,13 @@ }, "tinytex": { "Package": "tinytex", - "Version": "0.46", + "Version": "0.48", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "xfun" ], - "Hash": "0c41a73214d982f539c56a7773c7afa5" + "Hash": "8f96d229b7311beb32b94cf413b13f84" }, "tzdb": { "Package": "tzdb", @@ -1853,13 +1856,13 @@ }, "utf8": { "Package": "utf8", - "Version": "1.2.3", + "Version": "1.2.4", "Source": "Repository", - "Repository": "RSPM", + "Repository": "CRAN", "Requirements": [ "R" ], - "Hash": "1fe17157424bb09c48a8b3b550c753bc" + "Hash": "62b65c52671e6665f803ff02954446e9" }, "uuid": { "Package": "uuid", @@ -1873,7 +1876,7 @@ }, "vctrs": { "Package": "vctrs", - "Version": "0.6.3", + "Version": "0.6.4", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1883,7 +1886,7 @@ "lifecycle", "rlang" ], - "Hash": "d0ef2856b83dc33ea6e255caf6229ee2" + "Hash": "266c1ca411266ba8f365fcc726444b87" }, "viridisLite": { "Package": "viridisLite", @@ -1897,7 +1900,7 @@ }, "vroom": { "Package": "vroom", - "Version": "1.6.3", + "Version": "1.6.4", "Source": "Repository", "Repository": "CRAN", "Requirements": [ @@ -1919,31 +1922,31 @@ "vctrs", "withr" ], - "Hash": "8318e64ffb3a70e652494017ec455561" + "Hash": "9db52c1656cf19c124f93124ea57f0fd" }, "withr": { "Package": "withr", - "Version": "2.5.0", + "Version": "2.5.2", "Source": "Repository", - "Repository": "RSPM", + "Repository": "CRAN", "Requirements": [ "R", "grDevices", "graphics", "stats" ], - "Hash": "c0e49a9760983e81e55cdd9be92e7182" + "Hash": "4b25e70111b7d644322e9513f403a272" }, "xfun": { "Package": "xfun", - "Version": "0.40", + "Version": "0.41", "Source": "Repository", "Repository": "CRAN", "Requirements": [ "stats", "tools" ], - "Hash": "be07d23211245fc7d4209f54c4e4ffc8" + "Hash": "460a5e0fe46a80ef87424ad216028014" }, "xml2": { "Package": "xml2",