From 5e763972494c158f880bcd9c4d1c9535132bb65c Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 7 Nov 2023 00:40:34 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 1cdd609d9461861e5009b2fa38896cfc4c8d7c5d
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-10-30 18:51:44 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : ef0de0d332db00a7007de7a64e0f225180346c0d
Branch  : main
Author  : Laurent Gatto <laurent.gatto@uclouvain.be>
Time    : 2023-10-30 18:38:02 +0000
Message : Merge pull request #118 from csoneson/consistent-links

Use consistent links for rnaseq.csv
---
 10-data-organisation.html             |  2 +-
 20-r-rstudio.html                     |  2 +-
 23-starting-with-r.html               |  2 +-
 25-starting-with-data.html            | 16 +++----
 30-dplyr.html                         | 20 ++++-----
 40-visualization.html                 | 22 +++++-----
 404.html                              |  4 +-
 60-next-steps.html                    |  6 +--
 CODE_OF_CONDUCT.html                  |  2 +-
 LICENSE.html                          |  2 +-
 aio.html                              | 60 +++++++++++++--------------
 discuss.html                          |  2 +-
 images.html                           |  4 +-
 index.html                            |  4 +-
 instructor-notes.html                 |  4 +-
 instructor/10-data-organisation.html  |  2 +-
 instructor/20-r-rstudio.html          |  2 +-
 instructor/23-starting-with-r.html    |  2 +-
 instructor/25-starting-with-data.html | 16 +++----
 instructor/30-dplyr.html              | 20 ++++-----
 instructor/40-visualization.html      | 22 +++++-----
 instructor/404.html                   |  4 +-
 instructor/60-next-steps.html         |  6 +--
 instructor/CODE_OF_CONDUCT.html       |  2 +-
 instructor/LICENSE.html               |  2 +-
 instructor/aio.html                   | 60 +++++++++++++--------------
 instructor/discuss.html               |  2 +-
 instructor/images.html                |  4 +-
 instructor/index.html                 |  4 +-
 instructor/instructor-notes.html      |  4 +-
 instructor/key-points.html            |  4 +-
 instructor/profiles.html              |  4 +-
 instructor/reference.html             |  2 +-
 key-points.html                       |  4 +-
 pkgdown.yml                           |  2 +-
 profiles.html                         |  4 +-
 reference.html                        |  2 +-
 37 files changed, 163 insertions(+), 163 deletions(-)

diff --git a/10-data-organisation.html b/10-data-organisation.html
index 20fa57948..438068e65 100644
--- a/10-data-organisation.html
+++ b/10-data-organisation.html
@@ -1067,7 +1067,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/10-data-organisation.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/20-r-rstudio.html b/20-r-rstudio.html
index 4e5e3db57..091496f5c 100644
--- a/20-r-rstudio.html
+++ b/20-r-rstudio.html
@@ -1044,7 +1044,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/20-r-rstudio.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/23-starting-with-r.html b/23-starting-with-r.html
index 5d835e17d..03f239ef7 100644
--- a/23-starting-with-r.html
+++ b/23-starting-with-r.html
@@ -2065,7 +2065,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/23-starting-with-r.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/25-starting-with-data.html b/25-starting-with-data.html
index 589d28077..5f80f3e1e 100644
--- a/25-starting-with-data.html
+++ b/25-starting-with-data.html
@@ -584,7 +584,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ul><li>class: data frame</li>
 <li>how many rows: 66465, how many columns: 11</li>
@@ -681,7 +681,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb13">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -886,7 +886,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb31">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -940,7 +940,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <ul><li>missing quotations around the names of the animals</li>
 <li>missing one entry in the “feel” column (probably for one of the
@@ -988,7 +988,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb36">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1076,7 +1076,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Solution:
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb40">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1121,7 +1121,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb41">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1548,7 +1548,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/25-starting-with-data.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-26",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/30-dplyr.html b/30-dplyr.html
index cd5f45a3e..5b7730dfe 100644
--- a/30-dplyr.html
+++ b/30-dplyr.html
@@ -815,7 +815,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb27">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -936,7 +936,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb33">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1201,7 +1201,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1406,7 +1406,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb66">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1961,7 +1961,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb100">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2045,7 +2045,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <p>Let’s first calculate the mean expression level of X and Y linked
 genes from male and female samples…</p>
@@ -2157,7 +2157,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
 <div class="accordion-body">
 <p>Let’s first calculate the mean expression by gene and by time</p>
 <div class="codewrapper sourceCode" id="cb113">
@@ -2379,7 +2379,7 @@ <h4 class="accordion-header" id="headingSolution8">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution8" class="accordion-collapse collapse" aria-labelledby="headingSolution8" data-bs-parent="#accordionSolution8">
+<div id="collapseSolution8" class="accordion-collapse collapse" data-bs-parent="#accordionSolution8" aria-labelledby="headingSolution8">
 <div class="accordion-body">
 <p>Starting from the rna_time tibble:</p>
 <div class="codewrapper sourceCode" id="cb129">
@@ -2665,7 +2665,7 @@ <h4 class="accordion-header" id="headingSolution9">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution9" class="accordion-collapse collapse" aria-labelledby="headingSolution9" data-bs-parent="#accordionSolution9">
+<div id="collapseSolution9" class="accordion-collapse collapse" data-bs-parent="#accordionSolution9" aria-labelledby="headingSolution9">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb146">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2803,7 +2803,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/30-dplyr.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-10-30",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/40-visualization.html b/40-visualization.html
index 43c464d5f..6213a6875 100644
--- a/40-visualization.html
+++ b/40-visualization.html
@@ -459,7 +459,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb11">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -535,7 +535,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -725,7 +725,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb30">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -769,7 +769,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb32">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -825,7 +825,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p>We should switch the order of these two geoms:</p>
 <div class="codewrapper sourceCode" id="cb35">
@@ -879,7 +879,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb37">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -934,7 +934,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb39">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -969,7 +969,7 @@ <h4 class="accordion-header" id="headingSolution8">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution8" class="accordion-collapse collapse" aria-labelledby="headingSolution8" data-bs-parent="#accordionSolution8">
+<div id="collapseSolution8" class="accordion-collapse collapse" data-bs-parent="#accordionSolution8" aria-labelledby="headingSolution8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb40">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1186,7 +1186,7 @@ <h4 class="accordion-header" id="headingSolution9">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution9" class="accordion-collapse collapse" aria-labelledby="headingSolution9" data-bs-parent="#accordionSolution9">
+<div id="collapseSolution9" class="accordion-collapse collapse" data-bs-parent="#accordionSolution9" aria-labelledby="headingSolution9">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb56">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1369,7 +1369,7 @@ <h4 class="accordion-header" id="headingSolution10">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution10" class="accordion-collapse collapse" aria-labelledby="headingSolution10" data-bs-parent="#accordionSolution10">
+<div id="collapseSolution10" class="accordion-collapse collapse" data-bs-parent="#accordionSolution10" aria-labelledby="headingSolution10">
 <div class="accordion-body">
 <p>For example, based on this plot:</p>
 <div class="codewrapper sourceCode" id="cb65">
@@ -1756,7 +1756,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/40-visualization.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-10-30",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index 48238e7a5..c7cb9a21e 100644
--- a/404.html
+++ b/404.html
@@ -320,8 +320,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/bioc-intro/404.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/404.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/60-next-steps.html b/60-next-steps.html
index 4aa30e0a1..e362ba332 100644
--- a/60-next-steps.html
+++ b/60-next-steps.html
@@ -962,7 +962,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb44">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1033,7 +1033,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb48">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1474,7 +1474,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/60-next-steps.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index f83ecb3f6..85958a8c9 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -338,7 +338,7 @@ <h1>Contributor Code of Conduct</h1>
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diff --git a/LICENSE.html b/LICENSE.html
index e5d112103..81540b35c 100644
--- a/LICENSE.html
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 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
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 </button>
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 </button>
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 <p>Starting from the rna_time tibble:</p>
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
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 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
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-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
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 <div class="codewrapper sourceCode" id="cb35">
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 </button>
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 </button>
-<div id="collapseSolution10" class="accordion-collapse collapse" aria-labelledby="headingSolution10" data-bs-parent="#accordionSolution10">
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-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
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-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb31">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -941,7 +941,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <ul><li>missing quotations around the names of the animals</li>
 <li>missing one entry in the “feel” column (probably for one of the
@@ -989,7 +989,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb36">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1077,7 +1077,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Solution:
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb40">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1122,7 +1122,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb41">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1549,7 +1549,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/25-starting-with-data.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-26",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/30-dplyr.html b/instructor/30-dplyr.html
index d5e9ab8c3..9c0145cdc 100644
--- a/instructor/30-dplyr.html
+++ b/instructor/30-dplyr.html
@@ -816,7 +816,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb27">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -937,7 +937,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb33">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1202,7 +1202,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1407,7 +1407,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb66">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1962,7 +1962,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb100">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2046,7 +2046,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <p>Let’s first calculate the mean expression level of X and Y linked
 genes from male and female samples…</p>
@@ -2158,7 +2158,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
 <div class="accordion-body">
 <p>Let’s first calculate the mean expression by gene and by time</p>
 <div class="codewrapper sourceCode" id="cb113">
@@ -2380,7 +2380,7 @@ <h4 class="accordion-header" id="headingSolution8">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution8" class="accordion-collapse collapse" aria-labelledby="headingSolution8" data-bs-parent="#accordionSolution8">
+<div id="collapseSolution8" class="accordion-collapse collapse" data-bs-parent="#accordionSolution8" aria-labelledby="headingSolution8">
 <div class="accordion-body">
 <p>Starting from the rna_time tibble:</p>
 <div class="codewrapper sourceCode" id="cb129">
@@ -2666,7 +2666,7 @@ <h4 class="accordion-header" id="headingSolution9">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution9" class="accordion-collapse collapse" aria-labelledby="headingSolution9" data-bs-parent="#accordionSolution9">
+<div id="collapseSolution9" class="accordion-collapse collapse" data-bs-parent="#accordionSolution9" aria-labelledby="headingSolution9">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb146">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2804,7 +2804,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/30-dplyr.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-10-30",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/40-visualization.html b/instructor/40-visualization.html
index ddd40ff7d..2ebaefa7f 100644
--- a/instructor/40-visualization.html
+++ b/instructor/40-visualization.html
@@ -460,7 +460,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb11">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -536,7 +536,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -726,7 +726,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb30">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -770,7 +770,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb32">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -826,7 +826,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p>We should switch the order of these two geoms:</p>
 <div class="codewrapper sourceCode" id="cb35">
@@ -880,7 +880,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb37">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -935,7 +935,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb39">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -970,7 +970,7 @@ <h4 class="accordion-header" id="headingSolution8">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution8" class="accordion-collapse collapse" aria-labelledby="headingSolution8" data-bs-parent="#accordionSolution8">
+<div id="collapseSolution8" class="accordion-collapse collapse" data-bs-parent="#accordionSolution8" aria-labelledby="headingSolution8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb40">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1187,7 +1187,7 @@ <h4 class="accordion-header" id="headingSolution9">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution9" class="accordion-collapse collapse" aria-labelledby="headingSolution9" data-bs-parent="#accordionSolution9">
+<div id="collapseSolution9" class="accordion-collapse collapse" data-bs-parent="#accordionSolution9" aria-labelledby="headingSolution9">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb56">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1370,7 +1370,7 @@ <h4 class="accordion-header" id="headingSolution10">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution10" class="accordion-collapse collapse" aria-labelledby="headingSolution10" data-bs-parent="#accordionSolution10">
+<div id="collapseSolution10" class="accordion-collapse collapse" data-bs-parent="#accordionSolution10" aria-labelledby="headingSolution10">
 <div class="accordion-body">
 <p>For example, based on this plot:</p>
 <div class="codewrapper sourceCode" id="cb65">
@@ -1757,7 +1757,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/40-visualization.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-10-30",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 8c873305f..e6e27837e 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -320,8 +320,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/bioc-intro/instructor/404.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/404.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/60-next-steps.html b/instructor/60-next-steps.html
index 06ed876b3..b7624ed6a 100644
--- a/instructor/60-next-steps.html
+++ b/instructor/60-next-steps.html
@@ -963,7 +963,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb44">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1034,7 +1034,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb48">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1475,7 +1475,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/60-next-steps.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index f3e45ad35..385f96acc 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -339,7 +339,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index bcbe3c835..3a29fd672 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -391,7 +391,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/LICENSE.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 4a00d1972..f16347e7c 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -4000,7 +4000,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ul>
 <li>class: data frame</li>
@@ -4106,7 +4106,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb13">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4316,7 +4316,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb31">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4370,7 +4370,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <ul>
 <li>missing quotations around the names of the animals</li>
@@ -4422,7 +4422,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb36">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4511,7 +4511,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Solution:
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb40">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4556,7 +4556,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb41">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -5482,7 +5482,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb27">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -5604,7 +5604,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb33">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -5871,7 +5871,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb49">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -6079,7 +6079,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb66">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -6641,7 +6641,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb100">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -6725,7 +6725,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <p>Let’s first calculate the mean expression level of X and Y linked
 genes from male and female samples…</p>
@@ -6837,7 +6837,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
 <div class="accordion-body">
 <p>Let’s first calculate the mean expression by gene and by time</p>
 <div class="codewrapper sourceCode" id="cb113">
@@ -7059,7 +7059,7 @@ <h4 class="accordion-header" id="headingSolution8">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution8" class="accordion-collapse collapse" aria-labelledby="headingSolution8" data-bs-parent="#accordionSolution8">
+<div id="collapseSolution8" class="accordion-collapse collapse" data-bs-parent="#accordionSolution8" aria-labelledby="headingSolution8">
 <div class="accordion-body">
 <p>Starting from the rna_time tibble:</p>
 <div class="codewrapper sourceCode" id="cb129">
@@ -7346,7 +7346,7 @@ <h4 class="accordion-header" id="headingSolution9">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution9" class="accordion-collapse collapse" aria-labelledby="headingSolution9" data-bs-parent="#accordionSolution9">
+<div id="collapseSolution9" class="accordion-collapse collapse" data-bs-parent="#accordionSolution9" aria-labelledby="headingSolution9">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb146">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -7617,7 +7617,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb11">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -7696,7 +7696,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -7892,7 +7892,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb30">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -7937,7 +7937,7 @@ <h4 class="accordion-header" id="headingSolution4">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb32">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -7995,7 +7995,7 @@ <h4 class="accordion-header" id="headingSolution5">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p>We should switch the order of these two geoms:</p>
 <div class="codewrapper sourceCode" id="cb35">
@@ -8050,7 +8050,7 @@ <h4 class="accordion-header" id="headingSolution6">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb37">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -8108,7 +8108,7 @@ <h4 class="accordion-header" id="headingSolution7">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution7" class="accordion-collapse collapse" aria-labelledby="headingSolution7" data-bs-parent="#accordionSolution7">
+<div id="collapseSolution7" class="accordion-collapse collapse" data-bs-parent="#accordionSolution7" aria-labelledby="headingSolution7">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb39">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -8146,7 +8146,7 @@ <h4 class="accordion-header" id="headingSolution8">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution8" class="accordion-collapse collapse" aria-labelledby="headingSolution8" data-bs-parent="#accordionSolution8">
+<div id="collapseSolution8" class="accordion-collapse collapse" data-bs-parent="#accordionSolution8" aria-labelledby="headingSolution8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb40">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -8366,7 +8366,7 @@ <h4 class="accordion-header" id="headingSolution9">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution9" class="accordion-collapse collapse" aria-labelledby="headingSolution9" data-bs-parent="#accordionSolution9">
+<div id="collapseSolution9" class="accordion-collapse collapse" data-bs-parent="#accordionSolution9" aria-labelledby="headingSolution9">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb56">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -8554,7 +8554,7 @@ <h4 class="accordion-header" id="headingSolution10">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution10" class="accordion-collapse collapse" aria-labelledby="headingSolution10" data-bs-parent="#accordionSolution10">
+<div id="collapseSolution10" class="accordion-collapse collapse" data-bs-parent="#accordionSolution10" aria-labelledby="headingSolution10">
 <div class="accordion-body">
 <p>For example, based on this plot:</p>
 <div class="codewrapper sourceCode" id="cb65">
@@ -9597,7 +9597,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb44">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -9668,7 +9668,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb48">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -10103,8 +10103,8 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "url": "https://carpentries-incubator.github.io/bioc-intro/instructor/aio.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/aio.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index c77060923..cdf336ee2 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -332,7 +332,7 @@ <h1>Discussion</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/discuss.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index cbff8f29d..edf9c996b 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -577,8 +577,8 @@ <h3 id="60-next-steps-figure-2">Figure 2</h3>
   "url": "https://carpentries-incubator.github.io/bioc-intro/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/images.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 3a8853059..497cc401f 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -582,8 +582,8 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
   "url": "https://carpentries-incubator.github.io/bioc-intro/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/index.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 1ffcecf76..5fd8d05ef 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -365,8 +365,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/bioc-intro/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/instructor-notes.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index e203b0917..b8d062790 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -388,8 +388,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-intro/instructor/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 8013c1e74..2e2c036f3 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -288,8 +288,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-intro/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index b71aaa72b..0f403c386 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -332,7 +332,7 @@ <h1></h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/instructor/reference.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 1e30fe298..e170ccd26 100644
--- a/key-points.html
+++ b/key-points.html
@@ -392,8 +392,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-intro/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index dfd309025..47f8b4e75 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2023-10-31T00:42Z
+last_built: 2023-11-07T00:40Z
 
diff --git a/profiles.html b/profiles.html
index 2029a08cd..c9a65f317 100644
--- a/profiles.html
+++ b/profiles.html
@@ -289,8 +289,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-intro/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-10-31",
-  "datePublished": "2023-10-31"
+  "dateModified": "2023-11-07",
+  "datePublished": "2023-11-07"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 6f9d39924..4522d9323 100644
--- a/reference.html
+++ b/reference.html
@@ -331,7 +331,7 @@ <h1></h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-intro/reference.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-09-06",
-  "datePublished": "2023-10-31"
+  "datePublished": "2023-11-07"
 }
 
   </script><script>