pyproject.toml

[tool.poetry]
name = "mowgli"
version = "0.4.0"
description = "Mowgli is a novel method for the integration of paired multi-omics data with any type and number of omics, combining integrative Nonnegative Matrix Factorization and Optimal Transport."
authors = ["Geert-Jan Huizing <huizing@ens.fr>"]
license = "GPL-3.0-only"
readme = "README.md"

[tool.poetry.dependencies]
python = ">=3.8,<3.12"
torch = "^1.0.0"
numpy = "^1.0.0"
mudata = "^0.2.1"
tqdm = "^4.0.0"
scanpy = "^1.0.0"
anndata = "^0.8.0"
matplotlib = "^3.0.0"
scikit-learn = "^1.0.0"
scipy = "^1.0.0"

nbsphinx = { version = "^0.8.12", optional = true }
furo = { version = "^2022.12.7", optional = true }
gprofiler-official = { version = "^1.0.0", optional = true }
leidenalg = { version = "^0.9.1", optional = true }
pre-commit = { version = "^3.1.1", optional = true }

[tool.poetry.extras]
docs = ["nbsphinx", "furo"]
dev = ["pre-commit"]
full = ["gprofiler-official", "leidenalg"]

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"