form.yml

cluster: "research"
form:
  - r_provider
  - conda_path
  - apptainer_image
  - bih_cpus
  - bih_mem
  - bih_time
  - bih_partition
attributes:
  r_provider:
    widget: "select"
    label: "R Source"
    help: |
      You can either use R from within the provided Apptainer image (based
      on the Rocker project) or provide a path to your conda
      installation.
    options:
      - [ "Apptainer", "apptainer" ]
      - [ "conda", "conda" ]
  conda_path:
    widget: "text_field"
    label: "Conda Path"
    help: |
      Specify the path including the "bin" of the Miniforge3 installation
      that you want to use.  Separate name of environment with a colon.
      Example: `~/work/miniforge/bin:fancy-r`.
  apptainer_image:
    widget: "select"
    label: "Apptainer Image"
    help: |
      The Apptainer images are not always up to date. Missing packages?
      Try to build and use your own conda environment!
    options:
      - [ "rocker-rstudio_4.3.3.sif", "rocker-rstudio_4.3.3.sif" ]
      - [ "rocker-rstudio_4.4.1.sif", "rocker-rstudio_4.4.1.sif" ]
      - [ "rocker-rstudio_4.4.2.sif", "rocker-rstudio_4.4.2.sif" ]
  bih_cpus:
    widget: "number_field"
    label: "Number of cores"
    value: 4
    help: Number of cores to allocate.
    min: 1
    max: 64
    step: 1
  bih_mem:
    widget: "number_field"
    label: "Memory [GiB]"
    value: 4
    help: Memory to allocate for job.
    min: 1
    max: 256
  bih_time:
    widget: "text_field"
    label: "Running time"
    value: "1d"
    required: true
    help: |
      Specify the running time as either hours (e.g., '12h') or days (e.g., '3d').
    pattern: "^([0-9]{1,2}h|[1-9]d|1[0-4]d)$"
  bih_partition:
    widget: select
    label: "partition to run in"
    value: "long"
    help: |
      - **medium** - at most 7 days available (up to 128 cores in all jobs)
      - **long** - at most 28 days available (up to 32 cores in all jobs)
    options:
      - [ "medium", "medium" ]
      - [ "long", "long" ]