diff --git a/.github/workflows/validate_datasets.yml b/.github/workflows/validate_datasets.yml index ffe1ebc05..44dba5cc0 100644 --- a/.github/workflows/validate_datasets.yml +++ b/.github/workflows/validate_datasets.yml @@ -88,7 +88,7 @@ jobs: shell: bash - name: Skip MRS validation for legacy validator - run: for DS in mrs_* dwi_deriv; do touch $DS/.SKIP_VALIDATION; done + run: for DS in mrs_* ieeg_MED dwi_deriv; do touch $DS/.SKIP_VALIDATION; done if: matrix.bids-validator == 'legacy' shell: bash @@ -100,4 +100,4 @@ jobs: env: # When proposing new features, schema changes may be necessary. # Update this URL to the schema.json from PRs to the spec, when needed. - BIDS_SCHEMA: https://bids-specification--1864.org.readthedocs.build/en/1864/schema.json + BIDS_SCHEMA: https://bids-specification.readthedocs.io/en/latest/schema.json diff --git a/ieeg_MED/README b/ieeg_MED/README new file mode 100644 index 000000000..1455e71e0 --- /dev/null +++ b/ieeg_MED/README @@ -0,0 +1,4 @@ +Dataset description +=================== + +Example dataset demonstrating the [MED Format](https://medformat.org) diff --git a/ieeg_MED/dataset_description.json b/ieeg_MED/dataset_description.json new file mode 100644 index 000000000..e8f99173e --- /dev/null +++ b/ieeg_MED/dataset_description.json @@ -0,0 +1,20 @@ +{ + "Name": "Brainstorm epileptogenicity tutorial", + "BIDSVersion": "1.7.0", + "License": "This tutorial dataset (EEG and MRI data) remains property of the Grenoble University Hospital, France. Its use and transfer outside the ImaGIN tutorial, e.g. for research purposes, is prohibited without written consent. For questions, please contact Olivier David, PhD (olivier.david@inserm.fr).", + "Authors": [ + "Olivier David", + "Thomas Blauwblomme", + "Anne-Sophie Job", + "Stephan Chabardès", + "Dominique Hoffmann", + "Lorella Minotti", + "Philippe Kahane" + ], + "ReferencesAndLinks": [ + "David O, Blauwblomme T, Job AS, Chabardès S, Hoffmann D, Minotti L, Kahane P, Imaging the seizure onset zone with stereo-electroencephalography, Brain. 2011 Oct;134(10):2898-911", + "Lamarche F, Job AS, Deman P, Bhattacharjee M, Hoffmann D, Gallazzini-Crépin C, Bouvard S, Minotti L, Kahane P, David O, Correlation of FDG-PET hypometabolism and SEEG epileptogenicity mapping in patients with drug-resistant focal epilepsy, Epilepsia. 2016 Dec; 57(12):2045–2055", + "https://neuroimage.usc.edu/brainstorm/Tutorials/Epileptogenicity", + "https://f-tract.eu/tutorials/" + ] +} \ No newline at end of file diff --git a/ieeg_MED/participants.json b/ieeg_MED/participants.json new file mode 100644 index 000000000..543dff568 --- /dev/null +++ b/ieeg_MED/participants.json @@ -0,0 +1,15 @@ +{ + "age": { + "LongName": "age", + "Description": "age of the participant", + "Units": "years" + }, + "sex": { + "LongName": "sex", + "Description": "sex of the participant", + "Levels": { + "m": "male", + "f": "female" + } + } +} \ No newline at end of file diff --git a/ieeg_MED/participants.tsv b/ieeg_MED/participants.tsv new file mode 100644 index 000000000..a6a9ed477 --- /dev/null +++ b/ieeg_MED/participants.tsv @@ -0,0 +1,2 @@ +participant_id age sex +sub-01 n/a m diff --git a/ieeg_MED/sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz b/ieeg_MED/sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz new file mode 100644 index 000000000..e69de29bb diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_coordsystem.json b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_coordsystem.json new file mode 100644 index 000000000..7e2e41447 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_coordsystem.json @@ -0,0 +1,7 @@ +{ + "iEEGCoordinateSystem": "IXI549Space", + "iEEGCoordinateUnits": "mm", + "iEEGCoordinateProcessingDescription": "SEEG contacts manually placed with IntrAnat on the post-implantation T1w MRI, registered on the pre-implantation T1w, and normalized to IXI549Space with SPM12", + "iEEGCoordinateProcessingReference": "Deman, P., Bhattacharjee, M., Tadel, F., Job, A. S., Rivière, D., Cointepas, Y., Kahane, P., … David, O. (2018). IntrAnat Electrodes: A Free Database and Visualization Software for Intracranial Electroencephalographic Data Processed for Case and Group Studies. Frontiers in neuroinformatics, 12, 40. doi:10.3389/fninf.2018.00040", + "IntendedFor": "sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz" +} diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_electrodes.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_electrodes.tsv new file mode 100644 index 000000000..505723658 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-IXI549Space_electrodes.tsv @@ -0,0 +1,125 @@ +name x y z size hemisphere group type manufacturer +v'1 -2.142773 -38.682196 29.607849 5 L v' depth DIXI +v'2 -5.780327 -38.508810 29.615667 5 L v' depth DIXI +v'3 -9.424170 -38.327154 29.617274 5 L v' depth DIXI +v'4 -13.085162 -38.201440 29.737389 5 L v' depth DIXI +v'12 -42.867225 -37.987649 31.423371 5 L v' depth DIXI +v'13 -46.706554 -38.042728 31.546932 5 L v' depth DIXI +v'14 -50.542716 -38.146570 31.587165 5 L v' depth DIXI +v'15 -54.334033 -38.261455 31.585984 5 L v' depth DIXI +y'1 -33.025540 -1.252980 -7.783847 5 L y' depth DIXI +y'2 -32.750495 -3.502531 -4.431253 5 L y' depth DIXI +y'3 -32.456122 -5.760685 -1.115406 5 L y' depth DIXI +y'4 -32.245241 -8.014321 2.105200 5 L y' depth DIXI +y'5 -32.074522 -10.254071 5.316606 5 L y' depth DIXI +y'6 -31.822629 -12.486407 8.532736 5 L y' depth DIXI +y'7 -31.545732 -14.705389 11.727607 5 L y' depth DIXI +y'8 -31.200463 -16.906653 14.948259 5 L y' depth DIXI +y'9 -30.755714 -19.100763 18.214311 5 L y' depth DIXI +y'16 -27.271179 -34.686096 41.592751 5 L y' depth DIXI +y'17 -26.901452 -36.948599 45.168776 5 L y' depth DIXI +y'18 -26.652344 -39.195087 48.759740 5 L y' depth DIXI +t'1 -36.477081 -12.130454 -5.542343 5 L t' depth DIXI +t'2 -40.490739 -11.987153 -5.788616 5 L t' depth DIXI +t'3 -44.478796 -11.912610 -6.182991 5 L t' depth DIXI +t'4 -48.495460 -11.858580 -6.667650 5 L t' depth DIXI +t'5 -52.414682 -11.684004 -6.994740 5 L t' depth DIXI +t'6 -56.305639 -11.417642 -7.070488 5 L t' depth DIXI +t'7 -60.219873 -11.114201 -6.998614 5 L t' depth DIXI +t'8 -64.100601 -10.821062 -6.891831 5 L t' depth DIXI +u'1 -34.273569 -23.539595 7.111468 5 L u' depth DIXI +u'2 -38.179204 -23.548648 7.146989 5 L u' depth DIXI +u'3 -42.036746 -23.488456 7.177517 5 L u' depth DIXI +u'5 -49.671873 -23.430936 6.977465 5 L u' depth DIXI +u'6 -53.534716 -23.433236 6.874113 5 L u' depth DIXI +u'7 -57.434853 -23.415320 6.853044 5 L u' depth DIXI +u'8 -61.340470 -23.373730 6.878782 5 L u' depth DIXI +et'1 -19.641694 -10.584633 -31.317752 5 L et' depth DIXI +et'2 -23.507686 -10.449209 -31.051202 5 L et' depth DIXI +et'3 -27.376315 -10.265294 -30.889556 5 L et' depth DIXI +et'6 -38.840219 -9.844312 -31.080512 5 L et' depth DIXI +et'7 -42.698294 -9.573310 -31.230694 5 L et' depth DIXI +et'8 -46.549838 -9.317575 -31.487532 5 L et' depth DIXI +et'9 -50.410073 -9.045922 -31.776961 5 L et' depth DIXI +b'1 -19.760858 -21.741360 -16.908227 5 L b' depth DIXI +b'2 -23.625238 -21.448536 -16.765302 5 L b' depth DIXI +b'3 -27.517539 -21.150555 -16.651107 5 L b' depth DIXI +b'4 -31.398185 -20.840874 -16.575389 5 L b' depth DIXI +b'5 -35.241980 -20.516587 -16.643377 5 L b' depth DIXI +b'10 -54.662436 -18.545752 -16.762771 5 L b' depth DIXI +b'11 -58.460258 -18.098090 -16.606681 5 L b' depth DIXI +b'12 -62.193658 -17.715260 -16.604731 5 L b' depth DIXI +c'1 -22.972342 -37.078481 -3.024145 5 L c' depth DIXI +c'2 -26.816046 -37.028026 -2.857873 5 L c' depth DIXI +c'3 -30.667653 -37.023213 -2.737279 5 L c' depth DIXI +c'9 -53.634711 -38.230278 -2.668444 5 L c' depth DIXI +c'10 -57.378449 -38.345531 -2.617648 5 L c' depth DIXI +c'11 -61.115287 -38.427118 -2.468983 5 L c' depth DIXI +c'12 -64.853527 -38.511015 -2.231203 5 L c' depth DIXI +d'7 -50.834022 -47.171589 6.094132 5 L d' depth DIXI +d'8 -54.584015 -47.169812 6.242061 5 L d' depth DIXI +d'9 -58.310114 -47.135934 6.468913 5 L d' depth DIXI +d'10 -62.028192 -47.099832 6.762434 5 L d' depth DIXI +d'11 -65.764226 -47.101859 7.076189 5 L d' depth DIXI +x'1 -0.301606 -63.476428 35.783738 5 L x' depth DIXI +x'2 -3.881344 -63.327029 35.998620 5 L x' depth DIXI +x'3 -7.434621 -63.192405 36.152311 5 L x' depth DIXI +x'6 -18.155808 -62.823027 36.445711 5 L x' depth DIXI +x'7 -21.899046 -62.710971 36.726490 5 L x' depth DIXI +x'8 -25.633892 -62.456306 36.874153 5 L x' depth DIXI +x'9 -29.421238 -62.068526 36.939126 5 L x' depth DIXI +x'12 -40.765196 -61.195940 37.297498 5 L x' depth DIXI +x'13 -44.580039 -61.084174 37.296060 5 L x' depth DIXI +x'14 -48.444748 -61.083850 37.273794 5 L x' depth DIXI +e'1 -20.915413 -33.859055 -13.935391 5 L e' depth DIXI +e'2 -24.818663 -33.769540 -13.760457 5 L e' depth DIXI +e'3 -28.762218 -33.644963 -13.524973 5 L e' depth DIXI +e'4 -32.704405 -33.555932 -13.390849 5 L e' depth DIXI +e'5 -36.617365 -33.519510 -13.387071 5 L e' depth DIXI +e'8 -48.207656 -33.312034 -12.768362 5 L e' depth DIXI +e'9 -52.014556 -33.263218 -12.600289 5 L e' depth DIXI +e'10 -55.769064 -33.242006 -12.556868 5 L e' depth DIXI +e'11 -59.494495 -33.241149 -12.580450 5 L e' depth DIXI +l'1 -20.004693 -51.854923 -12.754893 5 L l' depth DIXI +l'2 -23.733068 -51.686399 -12.633724 5 L l' depth DIXI +l'3 -27.461860 -51.550031 -12.405111 5 L l' depth DIXI +l'4 -31.220036 -51.446617 -12.141054 5 L l' depth DIXI +l'5 -35.049386 -51.392473 -11.982179 5 L l' depth DIXI +l'6 -38.951844 -51.405717 -11.931394 5 L l' depth DIXI +l'7 -42.843860 -51.465370 -12.030616 5 L l' depth DIXI +l'8 -46.683136 -51.519830 -12.116584 5 L l' depth DIXI +l'9 -50.497398 -51.553525 -12.128410 5 L l' depth DIXI +f'1 -13.381800 -58.327880 -4.430583 5 L f' depth DIXI +f'2 -17.071247 -57.816084 -4.542754 5 L f' depth DIXI +f'3 -20.781428 -57.348724 -4.798471 5 L f' depth DIXI +f'4 -24.530090 -56.921080 -4.815027 5 L f' depth DIXI +f'8 -39.742365 -55.551939 -4.848105 5 L f' depth DIXI +f'9 -43.612983 -55.359501 -5.093762 5 L f' depth DIXI +f'10 -47.435440 -55.106644 -5.255262 5 L f' depth DIXI +f'11 -51.223598 -54.779276 -5.294677 5 L f' depth DIXI 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-40.720452 -72.794512 7.441627 5 L o' depth DIXI +o'12 -44.415895 -72.613910 7.395660 5 L o' depth DIXI +s'1 -3.371844 -68.452939 15.602427 5 L s' depth DIXI +s'2 -7.236137 -68.408966 15.848333 5 L s' depth DIXI +s'3 -11.093324 -68.329863 15.970856 5 L s' depth DIXI +s'10 -36.671355 -66.523135 17.376069 5 L s' depth DIXI +s'11 -40.361248 -66.365287 17.453095 5 L s' depth DIXI +s'12 -44.088159 -66.241898 17.527388 5 L s' depth DIXI diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_coordsystem.json b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_coordsystem.json new file mode 100644 index 000000000..ee6f24a4a --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_coordsystem.json @@ -0,0 +1,8 @@ +{ + "iEEGCoordinateSystem": "ScanRAS", + "iEEGCoordinateUnits": "mm", + "iEEGCoordinateSystemDescription": "Scanner-based RAS coordinates of the post-implantation T1 MRI", + "iEEGCoordinateProcessingDescription": "SEEG contacts manually placed with IntrAnat on the post-implantation T1w MRI, which was registered on the pre-implantation T1w", + "iEEGCoordinateProcessingReference": "Deman, P., Bhattacharjee, M., Tadel, F., Job, A. S., Rivière, D., Cointepas, Y., Kahane, P., … David, O. (2018). IntrAnat Electrodes: A Free Database and Visualization Software for Intracranial Electroencephalographic Data Processed for Case and Group Studies. Frontiers in neuroinformatics, 12, 40. doi:10.3389/fninf.2018.00040", + "IntendedFor": "sub-01/ses-postimp/anat/sub-01_ses-postimp_T1w.nii.gz" +} diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_electrodes.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_electrodes.tsv new file mode 100644 index 000000000..e0b477836 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_space-ScanRAS_electrodes.tsv @@ -0,0 +1,125 @@ +name x y z size hemisphere group type manufacturer +v'1 -1.224935 -30.186168 28.827099 5 L v' depth DIXI +v'2 -4.723552 -30.256567 28.895778 5 L v' depth DIXI +v'3 -8.222170 -30.326966 28.964457 5 L v' depth DIXI +v'4 -11.720788 -30.397365 29.033136 5 L v' depth DIXI +v'12 -39.709731 -30.960556 29.582568 5 L v' depth DIXI +v'13 -43.208349 -31.030955 29.651247 5 L v' depth DIXI +v'14 -46.706967 -31.101354 29.719926 5 L v' depth DIXI +v'15 -50.205585 -31.171753 29.788605 5 L v' depth DIXI +y'1 -29.245744 12.622002 9.428864 5 L y' depth DIXI +y'2 -28.983495 9.752645 11.415826 5 L y' depth DIXI +y'3 -28.721246 6.883289 13.402789 5 L y' depth DIXI +y'4 -28.458996 4.013933 15.389752 5 L y' depth DIXI +y'5 -28.196747 1.144577 17.376715 5 L y' depth DIXI +y'6 -27.934498 -1.724779 19.363677 5 L y' depth DIXI +y'7 -27.672249 -4.594135 21.350640 5 L y' depth DIXI +y'8 -27.410000 -7.463491 23.337603 5 L y' depth DIXI +y'9 -27.147751 -10.332847 25.324566 5 L y' depth DIXI +y'16 -25.312008 -30.418340 39.233305 5 L y' depth DIXI +y'17 -25.049759 -33.287696 41.220268 5 L y' depth DIXI +y'18 -24.787510 -36.157052 43.207231 5 L y' depth DIXI +t'1 -32.523819 1.759421 7.926010 5 L t' depth DIXI +t'2 -36.022976 1.836175 7.922439 5 L t' depth DIXI +t'3 -39.522132 1.912930 7.918867 5 L t' depth DIXI +t'4 -43.021289 1.989684 7.915296 5 L t' depth DIXI +t'5 -46.520445 2.066438 7.911724 5 L t' depth DIXI +t'6 -50.019602 2.143192 7.908153 5 L t' depth DIXI +t'7 -53.518758 2.219946 7.904581 5 L t' depth DIXI 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-28.605324 -4.091740 -3.606094 5 L b' depth DIXI +b'5 -32.091903 -3.830121 -3.446950 5 L b' depth DIXI +b'10 -49.524794 -2.522025 -2.651229 5 L b' depth DIXI +b'11 -53.011373 -2.260406 -2.492084 5 L b' depth DIXI +b'12 -56.497951 -1.998787 -2.332940 5 L b' depth DIXI +c'1 -21.184330 -22.253033 3.045646 5 L c' depth DIXI +c'2 -24.681022 -22.403486 3.068200 5 L c' depth DIXI +c'3 -28.177714 -22.553940 3.090754 5 L c' depth DIXI +c'9 -49.157866 -23.456659 3.226079 5 L c' depth DIXI +c'10 -52.654558 -23.607112 3.248633 5 L c' depth DIXI +c'11 -56.151250 -23.757565 3.271187 5 L c' depth DIXI +c'12 -59.647942 -23.908019 3.293741 5 L c' depth DIXI +d'7 -47.234690 -33.709259 7.460306 5 L d' depth DIXI +d'8 -50.731391 -33.766040 7.601239 5 L d' depth DIXI +d'9 -54.228091 -33.822821 7.742172 5 L d' depth DIXI +d'10 -57.724791 -33.879602 7.883106 5 L d' depth DIXI +d'11 -61.221492 -33.936383 8.024039 5 L d' depth DIXI +x'1 -0.791205 -54.101792 26.407426 5 L x' depth DIXI +x'2 -4.290415 -54.099629 26.481761 5 L x' depth DIXI +x'3 -7.789625 -54.097466 26.556096 5 L x' depth DIXI +x'6 -18.287254 -54.090978 26.779099 5 L x' depth DIXI +x'7 -21.786464 -54.088815 26.853434 5 L x' depth DIXI +x'8 -25.285674 -54.086652 26.927769 5 L x' depth DIXI +x'9 -28.784884 -54.084489 27.002103 5 L x' depth DIXI +x'12 -39.282514 -54.078001 27.225107 5 L x' depth DIXI +x'13 -42.781724 -54.075838 27.299442 5 L x' depth DIXI +x'14 -46.280933 -54.073675 27.373776 5 L x' depth DIXI +e'1 -19.406521 -16.834468 -4.731123 5 L e' depth DIXI +e'2 -22.905339 -16.852237 -4.641904 5 L e' depth DIXI +e'3 -26.404156 -16.870007 -4.552686 5 L e' depth DIXI +e'4 -29.902974 -16.887776 -4.463467 5 L e' depth DIXI +e'5 -33.401792 -16.905545 -4.374248 5 L e' depth DIXI +e'8 -43.898244 -16.958854 -4.106592 5 L e' depth DIXI +e'9 -47.397062 -16.976623 -4.017373 5 L e' depth DIXI +e'10 -50.895879 -16.994393 -3.928155 5 L e' depth DIXI +e'11 -54.394697 -17.012162 -3.838936 5 L e' depth DIXI +l'1 -18.943396 -33.588271 -9.740662 5 L l' depth DIXI +l'2 -22.440370 -33.617352 -9.598097 5 L l' depth DIXI +l'3 -25.937345 -33.646433 -9.455532 5 L l' depth DIXI +l'4 -29.434319 -33.675513 -9.312966 5 L l' depth DIXI +l'5 -32.931293 -33.704594 -9.170401 5 L l' depth DIXI +l'6 -36.428268 -33.733675 -9.027836 5 L l' depth DIXI +l'7 -39.925242 -33.762756 -8.885270 5 L l' depth DIXI +l'8 -43.422216 -33.791837 -8.742705 5 L l' depth DIXI +l'9 -46.919191 -33.820917 -8.600140 5 L l' depth DIXI +f'1 -12.897007 -40.983285 -5.409982 5 L f' depth DIXI +f'2 -16.383295 -40.704604 -5.275322 5 L f' depth DIXI +f'3 -19.869583 -40.425922 -5.140661 5 L f' depth DIXI +f'4 -23.355871 -40.147241 -5.006001 5 L f' depth DIXI +f'8 -37.301022 -39.032517 -4.467360 5 L f' depth DIXI +f'9 -40.787310 -38.753836 -4.332700 5 L f' depth DIXI +f'10 -44.273598 -38.475155 -4.198040 5 L f' depth DIXI +f'11 -47.759886 -38.196473 -4.063380 5 L f' depth DIXI +f'12 -51.246174 -37.917792 -3.928719 5 L f' depth DIXI +g'1 -14.257032 -49.713406 -9.874869 5 L g' depth DIXI +g'2 -17.755847 -49.639966 -9.821031 5 L g' depth DIXI +g'3 -21.254662 -49.566527 -9.767193 5 L g' depth DIXI +g'4 -24.753478 -49.493087 -9.713356 5 L g' depth DIXI +g'5 -28.252293 -49.419647 -9.659518 5 L g' depth DIXI +g'6 -31.751108 -49.346208 -9.605681 5 L g' depth DIXI +g'7 -35.249923 -49.272768 -9.551843 5 L g' depth DIXI +g'8 -38.748739 -49.199329 -9.498005 5 L g' depth DIXI +g'9 -42.247554 -49.125889 -9.444168 5 L g' depth DIXI +g'10 -45.746369 -49.052449 -9.390330 5 L g' depth DIXI +g'11 -49.245184 -48.979010 -9.336493 5 L g' depth DIXI +g'12 -52.744000 -48.905570 -9.282655 5 L g' depth DIXI +o'1 -4.031074 -58.475965 -0.783845 5 L o' depth DIXI +o'2 -7.529644 -58.403395 -0.714995 5 L o' depth DIXI +o'5 -18.025354 -58.185687 -0.508445 5 L o' depth DIXI +o'6 -21.523925 -58.113118 -0.439595 5 L o' depth DIXI +o'10 -35.518205 -57.822840 -0.164194 5 L o' depth DIXI +o'11 -39.016775 -57.750270 -0.095344 5 L o' depth DIXI +o'12 -42.515346 -57.677701 -0.026493 5 L o' depth DIXI +s'1 -3.551556 -54.010644 8.480628 5 L s' depth DIXI +s'2 -7.048585 -54.025869 8.624006 5 L s' depth DIXI +s'3 -10.545614 -54.041094 8.767384 5 L s' depth DIXI +s'10 -35.024816 -54.147670 9.771032 5 L s' depth DIXI +s'11 -38.521845 -54.162895 9.914410 5 L s' depth DIXI +s'12 -42.018873 -54.178120 10.057788 5 L s' depth DIXI diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_channels.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_channels.tsv new file mode 100644 index 000000000..1311544ef --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_channels.tsv @@ -0,0 +1,129 @@ +name type units low_cutoff high_cutoff sampling_frequency reference group status +v'1 SEEG uV n/a n/a 512 intracranial v' bad +v'2 SEEG uV n/a n/a 512 intracranial v' good +v'3 SEEG uV n/a n/a 512 intracranial v' good +v'4 SEEG uV n/a n/a 512 intracranial v' good +v'12 SEEG uV n/a n/a 512 intracranial v' good +v'13 SEEG uV n/a n/a 512 intracranial v' good +v'14 SEEG uV n/a n/a 512 intracranial v' good +v'15 SEEG uV n/a n/a 512 intracranial v' good +y'1 SEEG uV n/a n/a 512 intracranial y' good +y'2 SEEG uV n/a n/a 512 intracranial y' good +y'3 SEEG uV n/a n/a 512 intracranial y' good +y'4 SEEG uV n/a n/a 512 intracranial y' good +y'5 SEEG uV n/a n/a 512 intracranial y' good +y'6 SEEG uV n/a n/a 512 intracranial y' good +y'7 SEEG uV n/a n/a 512 intracranial y' good +y'8 SEEG uV n/a n/a 512 intracranial y' good +y'9 SEEG uV n/a n/a 512 intracranial y' good +y'16 SEEG uV n/a n/a 512 intracranial y' good +y'17 SEEG uV n/a n/a 512 intracranial y' good +y'18 SEEG uV n/a n/a 512 intracranial y' good +t'1 SEEG uV n/a n/a 512 intracranial t' good +t'2 SEEG uV n/a n/a 512 intracranial t' good +t'3 SEEG uV n/a n/a 512 intracranial t' good +t'4 SEEG uV n/a n/a 512 intracranial t' good +t'5 SEEG uV n/a n/a 512 intracranial t' good +t'6 SEEG uV n/a n/a 512 intracranial t' good +t'7 SEEG uV n/a n/a 512 intracranial t' good +t'8 SEEG uV n/a n/a 512 intracranial t' good +u'1 SEEG uV n/a n/a 512 intracranial u' good +u'2 SEEG uV n/a n/a 512 intracranial u' good +u'3 SEEG uV n/a n/a 512 intracranial u' good +u'5 SEEG uV n/a n/a 512 intracranial u' good +u'6 SEEG uV n/a n/a 512 intracranial u' good +u'7 SEEG uV n/a n/a 512 intracranial u' good +u'8 SEEG uV n/a n/a 512 intracranial u' good +et'1 SEEG uV n/a n/a 512 intracranial et' good +et'2 SEEG uV n/a n/a 512 intracranial et' good +et'3 SEEG uV n/a n/a 512 intracranial et' good +et'6 SEEG uV n/a n/a 512 intracranial et' good +et'7 SEEG uV n/a n/a 512 intracranial et' good +et'8 SEEG uV n/a n/a 512 intracranial et' good +et'9 SEEG uV n/a n/a 512 intracranial et' good +b'1 SEEG uV n/a n/a 512 intracranial b' good +b'2 SEEG uV n/a n/a 512 intracranial b' good +b'3 SEEG uV n/a n/a 512 intracranial b' good +b'4 SEEG uV n/a n/a 512 intracranial b' good +b'5 SEEG uV n/a n/a 512 intracranial b' good +b'10 SEEG uV n/a n/a 512 intracranial b' good +b'11 SEEG uV n/a n/a 512 intracranial b' good +b'12 SEEG uV n/a n/a 512 intracranial b' good +c'1 SEEG uV n/a n/a 512 intracranial c' good +c'2 SEEG uV n/a n/a 512 intracranial c' good +c'3 SEEG uV n/a n/a 512 intracranial c' good +c'9 SEEG uV n/a n/a 512 intracranial c' good +c'10 SEEG uV n/a n/a 512 intracranial c' good +c'11 SEEG uV n/a n/a 512 intracranial c' good +c'12 SEEG uV n/a n/a 512 intracranial c' good +d'7 SEEG uV n/a n/a 512 intracranial d' good +d'8 SEEG uV n/a n/a 512 intracranial d' good +d'9 SEEG uV n/a n/a 512 intracranial d' good +d'10 SEEG uV n/a n/a 512 intracranial d' good +d'11 SEEG uV n/a n/a 512 intracranial d' good +x'1 SEEG uV n/a n/a 512 intracranial x' good +x'2 SEEG uV n/a n/a 512 intracranial x' good +x'3 SEEG uV n/a n/a 512 intracranial x' good +x'6 SEEG uV n/a n/a 512 intracranial x' good +x'7 SEEG uV n/a n/a 512 intracranial x' good +x'8 SEEG uV n/a n/a 512 intracranial x' good +x'9 SEEG uV n/a n/a 512 intracranial x' good +x'12 SEEG uV n/a n/a 512 intracranial x' good +x'13 SEEG uV n/a n/a 512 intracranial x' good +x'14 SEEG uV n/a n/a 512 intracranial x' good +e'1 SEEG uV n/a n/a 512 intracranial e' good +e'2 SEEG uV n/a n/a 512 intracranial e' good +e'3 SEEG uV n/a n/a 512 intracranial e' good +e'4 SEEG uV n/a n/a 512 intracranial e' good +e'5 SEEG uV n/a n/a 512 intracranial e' good +e'8 SEEG uV n/a n/a 512 intracranial e' good +e'9 SEEG uV n/a n/a 512 intracranial e' good +e'10 SEEG uV n/a n/a 512 intracranial e' good +e'11 SEEG uV n/a n/a 512 intracranial e' good +l'1 SEEG uV n/a n/a 512 intracranial l' good +l'2 SEEG uV n/a n/a 512 intracranial l' good +l'3 SEEG uV n/a n/a 512 intracranial l' good +l'4 SEEG uV n/a n/a 512 intracranial l' good +l'5 SEEG uV n/a n/a 512 intracranial l' good +l'6 SEEG uV n/a n/a 512 intracranial l' good +l'7 SEEG uV n/a n/a 512 intracranial l' good +l'8 SEEG uV n/a n/a 512 intracranial l' good +l'9 SEEG uV n/a n/a 512 intracranial l' good +f'1 SEEG uV n/a n/a 512 intracranial f' bad +f'2 SEEG uV n/a n/a 512 intracranial f' good +f'3 SEEG uV n/a n/a 512 intracranial f' good +f'4 SEEG uV n/a n/a 512 intracranial f' good +f'8 SEEG uV n/a n/a 512 intracranial f' good +f'9 SEEG uV n/a n/a 512 intracranial f' good +f'10 SEEG uV n/a n/a 512 intracranial f' good +f'11 SEEG uV n/a n/a 512 intracranial f' good +f'12 SEEG uV n/a n/a 512 intracranial f' good +g'1 SEEG uV n/a n/a 512 intracranial g' good +g'2 SEEG uV n/a n/a 512 intracranial g' good +g'3 SEEG uV n/a n/a 512 intracranial g' good +g'4 SEEG uV n/a n/a 512 intracranial g' good +g'5 SEEG uV n/a n/a 512 intracranial g' good +g'6 SEEG uV n/a n/a 512 intracranial g' good +g'7 SEEG uV n/a n/a 512 intracranial g' good +g'8 SEEG uV n/a n/a 512 intracranial g' good +g'9 SEEG uV n/a n/a 512 intracranial g' good +g'10 SEEG uV n/a n/a 512 intracranial g' good +g'11 SEEG uV n/a n/a 512 intracranial g' good +g'12 SEEG uV n/a n/a 512 intracranial g' good +o'1 SEEG uV n/a n/a 512 intracranial o' good +o'2 SEEG uV n/a n/a 512 intracranial o' good +o'5 SEEG uV n/a n/a 512 intracranial o' good +o'6 SEEG uV n/a n/a 512 intracranial o' good +o'10 SEEG uV n/a n/a 512 intracranial o' good +o'11 SEEG uV n/a n/a 512 intracranial o' good +o'12 SEEG uV n/a n/a 512 intracranial o' good +s'1 SEEG uV n/a n/a 512 intracranial s' good +s'2 SEEG uV n/a n/a 512 intracranial s' good +s'3 SEEG uV n/a n/a 512 intracranial s' good +s'10 SEEG uV n/a n/a 512 intracranial s' good +s'11 SEEG uV n/a n/a 512 intracranial s' good +s'12 SEEG uV n/a n/a 512 intracranial s' good +fz EEG uV n/a n/a 512 unknown n/a good +cz EEG uV n/a n/a 512 unknown n/a good +ecg1 ECG uV n/a n/a 512 unknown n/a good +ecg2 ECG uV n/a n/a 512 unknown n/a good diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_events.tsv b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_events.tsv new file mode 100644 index 000000000..47c5aae5d --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_events.tsv @@ -0,0 +1,2 @@ +onset duration trial_type +120.369 0 Seizure diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.json b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.json new file mode 100644 index 000000000..77d5cc1b4 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.json @@ -0,0 +1,30 @@ +{ + "TaskName": "seizure", + "SamplingFrequency": 512, + "PowerLineFrequency": 50, + "SoftwareFilters": "n/a", + "HardwareFilters": "n/a", + "Manufacturer": "Micromed", + "ManufacturersModelName": "Unknown", + "TaskDescription": "Spontaneous seizure, focal epilepsy of the left temporo-occipital junction", + "Instructions": "n/a", + "InstitutionName": "Grenoble Institut des Neurosciences / CHU Grenoble Alpes", + "InstitutionAddress": "Chemin Fortuné Ferrini, 38700 La Tronche, France", + "ECOGChannelCount": 0, + "SEEGChannelCount": 124, + "EEGChannelCount": 2, + "EOGChannelCount": 0, + "ECGChannelCount": 2, + "EMGChannelCount": 0, + "MiscChannelCount": 0, + "TriggerChannelCount": 0, + "RecordingDuration": 255.920, + "RecordingType": "continuous", + "SoftwareVersions": "Unknown", + "iEEGPlacementScheme": "depth electrodes around the seizure onset zone", + "iEEGReference": "intracranial channel not included with data", + "ElectrodeManufacturer": "DIXI", + "ElectrodeManufacturersModelName": "D08-**AM Microdeep electrodes", + "iEEGGround": "unknown", + "ElectricalStimulation": false +} diff --git a/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001.rdat b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/g1_0001.ticd/g1_0001.rdat new file mode 100644 index 000000000..0eec245bd Binary files /dev/null and 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b/ieeg_MED/sub-01/ses-postimp/ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd/test.ridx differ diff --git a/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv new file mode 100644 index 000000000..91d98fdf4 --- /dev/null +++ b/ieeg_MED/sub-01/ses-postimp/sub-01_ses-postimp_scans.tsv @@ -0,0 +1,3 @@ +filename acq_time +anat/sub-01_ses-postimp_T1w.nii.gz 1900-01-01T00:00:00 +ieeg/sub-01_ses-postimp_task-seizure_run-01_ieeg.medd 1900-01-01T00:00:00 diff --git a/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.json b/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.json new file mode 100644 index 000000000..74bfff47a --- /dev/null +++ b/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.json @@ -0,0 +1,34 @@ +{ + "AnatomicalLandmarkCoordinates": { + "NAS": [ + 129, + 214, + 67 + ], + "LPA": [ + 203, + 110, + 42 + ], + "RPA": [ + 53, + 116, + 41 + ], + "AC": [ + 128, + 130, + 83 + ], + "PC": [ + 128, + 103, + 80 + ], + "IH": [ + 128, + 114, + 135 + ] + } +} diff --git a/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.nii.gz b/ieeg_MED/sub-01/ses-preimp/anat/sub-01_ses-preimp_T1w.nii.gz new file mode 100644 index 000000000..e69de29bb diff --git a/ieeg_MED/sub-01/ses-preimp/sub-01_ses-preimp_scans.tsv b/ieeg_MED/sub-01/ses-preimp/sub-01_ses-preimp_scans.tsv new file mode 100644 index 000000000..e6075808b --- /dev/null +++ b/ieeg_MED/sub-01/ses-preimp/sub-01_ses-preimp_scans.tsv @@ -0,0 +1,2 @@ +filename acq_time +anat/sub-01_ses-preimp_T1w.nii.gz 1900-01-01T00:00:00 \ No newline at end of file