From 4eb6c833220825b5c968ae5389d0a79bdcced26c Mon Sep 17 00:00:00 2001
From: Nick Croucher <n.croucher@imperial.ac.uk>
Date: Fri, 15 Nov 2024 09:53:43 +0000
Subject: [PATCH] Remove obsolete node labels

---
 PopPUNK/visualise.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/PopPUNK/visualise.py b/PopPUNK/visualise.py
index cd58e481..151b8f3e 100644
--- a/PopPUNK/visualise.py
+++ b/PopPUNK/visualise.py
@@ -708,11 +708,10 @@ def generate_visualisations(query_db,
             sys.exit(1)
         # If network has been pruned then only use the appropriate subset of names - otherwise use all names
         # for full network
-        node_labels = viz_subset if use_partial_query_graph is not None else combined_seq
         sys.stderr.write('Preparing outputs for cytoscape\n')
         outputsForCytoscape(genomeNetwork,
                             mst_graph,
-                            node_labels,
+                            combined_seq,
                             isolateClustering,
                             output,
                             info_csv,