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Have more cell types builtin (e.g. Izhikevich) to improve NeuroML compat #1832

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brenthuisman opened this issue Feb 7, 2022 · 3 comments · May be fixed by #2230
Open
3 tasks

Have more cell types builtin (e.g. Izhikevich) to improve NeuroML compat #1832

brenthuisman opened this issue Feb 7, 2022 · 3 comments · May be fixed by #2230
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enhancement Feature Request help wanted neuroml NeuroML support in Arbor neuroscience Project: Arborio Project: Fippa

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@brenthuisman
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brenthuisman commented Feb 7, 2022 •
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NeuroML relies on the simulator to have implementations for cell kinds, one of which is izhikevichCell. The rather short list of point neuron models in Arbor has been mentioned before, so that makes two reasons to consider expanding the list. For reference: here (scroll down on the RHS) the list that NeuroML expects.

  • Get feedback on a list of most wanted cell kinds.
    • Bring up in the upcoming Developer Meeting.
  • Are there any cell kinds needed to show off our NML support? Anything that would to well in a publication?

Whoever reads this, please add your cell kinds in a comment.
@brenthuisman brenthuisman added this to the v0.7 milestone Feb 7, 2022
@thorstenhater
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This is only a small step on the road to a larger project:

@schmitts
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schmitts commented Feb 7, 2022

AdEx would be nice

@brenthuisman
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#1605 is ambitious and long term. Earlier we advised people to write a mechanism to implement their own single compartment neuron, e.g. https://github.com/tetzlab/FIPPA

@brenthuisman brenthuisman removed this from the v0.7 milestone Mar 2, 2022
@thorstenhater thorstenhater linked a pull request Nov 24, 2023 that will close this issue
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enhancement Feature Request help wanted neuroml NeuroML support in Arbor neuroscience Project: Arborio Project: Fippa
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Add AdEx cells. thorstenhater/arbor
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@schmitts @brenthuisman @thorstenhater