create_info.yaml

name: Create info files
on:
  workflow_dispatch:
    inputs:
      directory:
        default: "anvil-rstudio-bioconductor"
        required: true
      version:
        required: false
        description: "Overwrite tag, defaults to VERSION file"

jobs:
  build:
    name: Generate info json file for Broad GCR container
    runs-on: ubuntu-latest
    steps:
      - name: Free root space
        uses: almahmoud/free-root-space@v1
        with:
          verbose: true

      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - uses: actions/setup-python@v4
        with:
          python-version: '3.10'

      - name: Generate info JSON with Broad script
        continue-on-error: true
        run: |
          mkdir -p ${{ inputs.directory }}/info
          mkdir -p /tmp/${{ inputs.directory }}
          CURR_VERSION="${{ inputs.version }}"
          if [ -z "$CURR_VERSION" ]; then
            CURR_VERSION=$(cat ${{ inputs.directory }}/VERSION)
          fi
          echo "Used version is $CURR_VERSION"
          docker run --name ${{ inputs.directory }} -d us.gcr.io/broad-dsp-gcr-public/${{ inputs.directory }}:${CURR_VERSION}
          sed -i "s/##${{ inputs.directory }}-VERSION##/${CURR_VERSION}/g" config/conf.json
          bash scripts/generate_packages.sh ${{ inputs.directory }}

      - name: Copy to tmp before retry
        run: |
          # Remove spaces
          (cd ${{ inputs.directory }}/info && for file in *; do [[ "$file" == *" "* ]] && mv "$file" "${file// /}"; done) || true
          cp -r ${{ inputs.directory }}/info /tmp/${{ inputs.directory }}/

      - name: Push info
        uses: nick-fields/retry@v2
        with:
          timeout_minutes: 10
          max_attempts: 50
          shell: bash
          command: |
            set -x
            git config --global --add safe.directory "$GITHUB_WORKSPACE"
            git pull origin ${GITHUB_REF#refs/heads/} || git reset --hard origin/${GITHUB_REF#refs/heads/}
            git config user.name github-actions
            git config user.email github-actions@github.com
            cp -r /tmp/${{ inputs.directory }}/info ${{ inputs.directory }}/
            git add ${{ inputs.directory }}
            git commit -m "Generated info for ${{ inputs.directory }}"
            git push