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modeling_L0_5.sh
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#!/bin/sh
#PBS -N modelLevel0Job5
#PBS -l nodes=1:ppn=40
#PBS -l walltime=30:00:00
#PBS -o TestJob5.stdout
#PBS -e TestJob5.stderr
#PBS -m be
#PBS -M [email protected]
cd $PBS_O_WORKDIR/weka-3-7-6
java -Xmx70g -Xss5g weka.classifiers.meta.FilteredClassifier -t ../model_new/70/Level0/ssf_ps_pfam_all4_train80_sparse.arff -o -i -d ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -F "weka.filters.unsupervised.attribute.Remove -R first" -W weka.classifiers.trees.RandomForest -- -I 10 -K 0 -S 1 -num-slots 40
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_train80_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -o -i >../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.result
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_test20_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -o -i >../model_new/70/Level0/ssf_all4_randomforest_train80_test20_sparse.result
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_train80_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -p 1 -distribution >../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.p
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_test20_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -p 1 -distribution >../model_new/70/Level0/ssf_all4_randomforest_test20_sparse.p
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_train80_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -threshold-file ../model_new/70/Level0/ssf_all4_randomforest_thresholdNE_train80.csv -threshold-label NE
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_train80_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -threshold-file ../model_new/70/Level0/ssf_all4_randomforest_thresholdE_train80.csv -threshold-label E
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_test20_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -threshold-file ../model_new/70/Level0/ssf_all4_randomforest_thresholdNE_test20.csv -threshold-label NE
java -Xmx70g -Xss5g weka.classifiers.trees.RandomForest -T ../model_new/70/Level0/ssf_ps_pfam_all4_test20_sparse.arff -l ../model_new/70/Level0/ssf_all4_randomforest_train80_sparse.model -threshold-file ../model_new/70/Level0/ssf_all4_randomforest_thresholdE_test20.csv -threshold-label E